mRNA_H-canaliculatus_F_contig13586.2896.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13586.2896.1
Unique NamemRNA_H-canaliculatus_F_contig13586.2896.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 481 bits (1239), Expect = 4.910e-153
Identity = 238/256 (92.97%), Postives = 243/256 (94.92%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            FDQRPYFRIFL+LVEEMNKPDRQLDNTN+QVLAAF SAFHALQPA CPGFAFSWLELVSHRSFMPKLL+ KQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIP  CIQLRNL+LAAFPRSMRLPDPFTPNLKVDLLPEIAL PRILSNYVAALSHN IKQDLDKFLQTRHQP NFL ELP KLRLSA EAAHTGMTYNV C+NSLVVYVGSQAI QLNNKTP
Sbjct: 2475 FDQRPYFRIFLDLVEEMNKPDRQLDNTNLQVLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRLSAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTP 2730
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: D8LMN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN2_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 4.480e-136
Identity = 210/228 (92.11%), Postives = 214/228 (93.86%), Query Frame = 1 
Query:   85 IQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            + VLAAF SAFHALQPA CPGFAFSWLELVSHRSFMPKLL+ KQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIP  CIQLRNL+LAAFPRSMRLPDPFTPNLKVDLLPEIAL PRILSNYVAALSHN IKQDLDKFLQTRHQP NFL ELP KLRLSA EAAHTGMTYNV C+NSLVVYVGSQAI QLNNKTP
Sbjct:  985 VVVLAAFTSAFHALQPAVCPGFAFSWLELVSHRSFMPKLLLVKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPAACIQLRNLILAAFPRSMRLPDPFTPNLKVDLLPEIALPPRILSNYVAALSHNNIKQDLDKFLQTRHQPANFLTELPAKLRLSAQEAAHTGMTYNVPCMNSLVVYVGSQAIQQLNNKTP 1212
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 360 bits (924), Expect = 1.050e-110
Identity = 180/254 (70.87%), Postives = 208/254 (81.89%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNK 762
            FDQRPYFR+ L+L+++ N PDR LD++N+QVLAAFASAFH LQPA  P FAF+WLELVSHR FMP LL+A+Q KGW  MHRLL+DLL FMEP LRR  L  +VR LY+GMLR LLVLLHDFPEFL +YH S CDVIPP+CIQLRNLVL+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSNY AAL  +GI  DLDK+LQTR  P  FL ELP +LRL A +AA TG  +NV  +++LVVYVGSQAI Q+ +K
Sbjct: 2280 FDQRPYFRLLLSLLQDFNAPDRVLDSSNLQVLAAFASAFHVLQPATAPAFAFAWLELVSHRMFMPTLLLARQQKGWMLMHRLLVDLLSFMEPRLRRAALGGAVRTLYRGMLRVLLVLLHDFPEFLCEYHFSLCDVIPPSCIQLRNLVLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNYTAALVSSGISADLDKYLQTRG-PAQFLVELPARLRLPAVDAARTGSQHNVQALSALVVYVGSQAIAQMQSK 2532
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A7S2WB04_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB04_9STRA)

HSP 1 Score: 345 bits (884), Expect = 2.120e-107
Identity = 173/257 (67.32%), Postives = 207/257 (80.54%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQ-NKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            FDQRPYFR+F NL+ ++  PD  +D  N+QVL AFA+AFH LQP + P FAFSWLEL+SHR+FMP LL+AK   KGW  MHRLL+DL +FMEP+LRR  L  +++ LY+G LR LLVLLHDFPEFL DYH SFCDVIPP CIQLRNL L+AFPR+MRLPDPFTPNLKVDLLPEIA  PRILSNYVAALS+NGI+Q+LD +L+ R  P +FL  LPG+LR S  +AA    +YNV+ IN+LVVY+GSQ+ILQL  K+P
Sbjct:  719 FDQRPYFRVFANLLRDLTAPDPVVDANNLQVLGAFANAFHGLQPQSVPAFAFSWLELISHRTFMPTLLLAKPAQKGWMLMHRLLVDLFVFMEPYLRRSQLPLAIKTLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQLRNLFLSAFPRTMRLPDPFTPNLKVDLLPEIAQPPRILSNYVAALSYNGIRQELDNYLKNR-APKSFLEWLPGRLRASPSQAASGSASYNVASINALVVYIGSQSILQLQ-KSP 973
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A6S8SJ33_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SJ33_9STRA)

HSP 1 Score: 333 bits (855), Expect = 1.400e-101
Identity = 167/255 (65.49%), Postives = 203/255 (79.61%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKT 765
            FDQRPYFR+FLNL++++N PD  LD++N +VLAAFA+  HALQPA  PGFAFSWLELVSHR FMP LL+AK  KGW+ MHRLL+DL +F+EP+LR+  L ++ RLLY+G LR LLVLLHDFPEFLSDYH SFCDVIP +CIQLRNL L+AFPRSMRLPDPFTPNLKVDLLPEI+  PRILSN V AL    +++ LD++L TRH P++FL +LP KL  +     H   +YNV  +NSLVV+VG  AI QL+ K+
Sbjct: 1301 FDQRPYFRLFLNLLQDLNVPDPVLDSSNPRVLAAFATVLHALQPAVTPGFAFSWLELVSHRMFMPNLLLAKNQKGWALMHRLLVDLFVFLEPYLRQVQLSDAARLLYKGALRVLLVLLHDFPEFLSDYHFSFCDVIPSSCIQLRNLFLSAFPRSMRLPDPFTPNLKVDLLPEISQPPRILSNCVIALEACALREPLDEYLLTRH-PISFLLDLPRKLLDANTNNDHVITSYNVPLVNSLVVHVGMTAISQLHTKS 1554
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A2G3DJ81_CAPCH (CCR4-NOT transcription complex subunit 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3DJ81_CAPCH)

HSP 1 Score: 313 bits (802), Expect = 3.160e-100
Identity = 159/256 (62.11%), Postives = 188/256 (73.44%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + +++  D   D  N  VL A A+AFHALQP   PGF+F+WLELVSHRSFMPKLL     KGW Y  RLL+DL  FMEP LR   L E V+ LY+G LR LLVLLHDFPEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL EI+ +PRILS   AAL    +K D+D++L+TR Q   FL+EL  KL LS  EAA  G  YNV  INSLV+YVG QAI QL  KTP
Sbjct:  200 FNPRPYFRLFINWLVDLSSLDPVFDGANFHVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTP 455
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A7C8ZN98_OPUST (Not1 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZN98_OPUST)

HSP 1 Score: 311 bits (796), Expect = 6.290e-99
Identity = 156/257 (60.70%), Postives = 191/257 (74.32%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAI--LQLNNKT 765
            F+ RPYFR+F+N + ++   D   D  N QVL+AFA+AFHALQP   P F+F+WLELVSHR+FMPKLL     KGW ++HRLL+DL  FMEP LR   L E +R LY+G LR LLVLLHDFPEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL E++ APRILS   AA+    +K D+D++L+TR Q   FL EL  +L LS  EAAH G  YNV  INSLV+YVG QAI  LQ  N++
Sbjct:  238 FNPRPYFRLFINWLSDIGSLDPLHDGVNFQVLSAFANAFHALQPLKVPAFSFAWLELVSHRTFMPKLLTGNSQKGWPFLHRLLVDLFQFMEPFLRNAELGELIRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLEEMSQAPRILSEVDAAIKAKQMKADVDEYLRTRQQGSPFLGELKQRLLLSPKEAAHAGTRYNVPLINSLVLYVGMQAIQLLQARNRS 494
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A2R6RCU0_ACTCC (CCR4-NOT transcription complex subunit like n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RCU0_ACTCC)

HSP 1 Score: 308 bits (790), Expect = 6.840e-98
Identity = 156/256 (60.94%), Postives = 186/256 (72.66%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + ++   D   D  N QVL AFA+AFHALQP   PGF+++WLELVSHRSFMPKLL     KGW YM RLL+D+  F+EP LR   L E V  LY+G LR LLVLLHD+PEFL DYH SFCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLL EI+  PRILS   AAL    IK DLD++ +TR Q  +FL EL  KL L   +AA  G  YNV  INSLV+YVG QAI QL  +TP
Sbjct:  247 FNARPYFRLFINWLLDLGSMDPVFDGANFQVLIAFANAFHALQPLKVPGFSYAWLELVSHRSFMPKLLTGNAQKGWPYMQRLLVDVFQFLEPFLRNAELEEPVHFLYKGTLRVLLVLLHDYPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEISQPPRILSEVDAALKAKLIKGDLDEYQKTRQQGSSFLTELKQKLLLPPGDAARAGTRYNVPLINSLVLYVGMQAIQQLQARTP 502
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: UPI000B8CD776 (CCR4-NOT transcription complex subunit 1-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CD776)

HSP 1 Score: 307 bits (787), Expect = 1.530e-96
Identity = 155/255 (60.78%), Postives = 188/255 (73.73%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKT 765
            F+ RPYFR+F+N + ++   D   D+ N Q+L AFA+AFHALQP   P F+F+WLELVSHRSFMPKLL     KGW Y+ RLL+DLL F+EP LR   L   V  LY+G LR LLVLLHDFPEFL DYH +FCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLLPEI   PRILS   AAL    +K D+D++L+TR Q  +FL+EL  +L LS  EAA  G  YNV  INSLV+YVG QAI QL  +T
Sbjct:  337 FNPRPYFRLFINWLLDLGSLDPLTDSANFQILTAFANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNGQKGWPYVQRLLVDLLQFLEPFLRHAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKADVDEYLKTRQQGSSFLSELKQRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQART 591
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BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Match: A0A1U8I0Y6_GOSHI (CCR4-NOT transcription complex subunit 1-like n=2 Tax=Gossypium TaxID=3633 RepID=A0A1U8I0Y6_GOSHI)

HSP 1 Score: 300 bits (768), Expect = 5.920e-96
Identity = 152/257 (59.14%), Postives = 185/257 (71.98%), Query Frame = 1 
Query:    1 FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGFAFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLLESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAAFPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFLQTRHQP-VNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQLNNKTP 768
            F+ RPYFR+F+N + ++   D   D  N Q+L AFA+ FH LQP   P F F+WLELVSHR+FMPKLL     KGW Y+ RLL+DLL F+EP LR   L   V  LY+G LR LLVLLHDFPEFL DYH +FCDVIPP+CIQ+RN++L+AFPR+MRLPDP TPNLK+DLLPEI  +PRILS   AAL    +K D+D++L+TR Q   +FL EL  +L LS  EAA  G  YNV  INSLV+YVG QAI QL ++ P
Sbjct:  127 FNPRPYFRLFINWLLDLGSLDPVTDGANFQILTAFANTFHVLQPLKVPSFCFAWLELVSHRTFMPKLLTGNSQKGWPYIQRLLVDLLQFLEPFLRNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRESPRILSEVDAALKAKQMKADVDEYLKTRPQGGSSFLTELKQRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVP 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13586.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXN6_9PHAE4.910e-15392.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN2_ECTSI4.480e-13692.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZHM2_9STRA1.050e-11070.87CCR4-Not complex component, Not1-domain-containing... [more]
A0A7S2WB04_9STRA2.120e-10767.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6S8SJ33_9STRA1.400e-10165.49Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2G3DJ81_CAPCH3.160e-10062.11CCR4-NOT transcription complex subunit 1 n=1 Tax=C... [more]
A0A7C8ZN98_OPUST6.290e-9960.70Not1 domain-containing protein n=1 Tax=Opuntia str... [more]
A0A2R6RCU0_ACTCC6.840e-9860.94CCR4-NOT transcription complex subunit like n=1 Ta... [more]
UPI000B8CD7761.530e-9660.78CCR4-NOT transcription complex subunit 1-like n=1 ... [more]
A0A1U8I0Y6_GOSHI5.920e-9659.14CCR4-NOT transcription complex subunit 1-like n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13586contigH-canaliculatus_F_contig13586:221..2700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.8
Seed ortholog evalue7.2e-117
Seed eggNOG ortholog2880.D8LMN2
KEGG koko:K12604
KEGG Pathwayko03018,map03018
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size768
Cds size768
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13586.2896.1prot_H-canaliculatus_F_contig13586.2896.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13586 221..2700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.6347506-CDS-H-canaliculatus_F_contig13586:220..3101622929101.6347506-CDS-H-canaliculatus_F_contig13586:220..310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 221..310 +
1696845679.1992884-CDS-H-canaliculatus_F_contig13586:220..3101696845679.1992884-CDS-H-canaliculatus_F_contig13586:220..310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 221..310 +
1622929101.6520965-CDS-H-canaliculatus_F_contig13586:1060..12571622929101.6520965-CDS-H-canaliculatus_F_contig13586:1060..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 1061..1257 +
1696845679.2143383-CDS-H-canaliculatus_F_contig13586:1060..12571696845679.2143383-CDS-H-canaliculatus_F_contig13586:1060..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 1061..1257 +
1622929101.6709538-CDS-H-canaliculatus_F_contig13586:1545..17561622929101.6709538-CDS-H-canaliculatus_F_contig13586:1545..1756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 1546..1756 +
1696845679.2230406-CDS-H-canaliculatus_F_contig13586:1545..17561696845679.2230406-CDS-H-canaliculatus_F_contig13586:1545..1756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 1546..1756 +
1622929101.6870797-CDS-H-canaliculatus_F_contig13586:2151..23221622929101.6870797-CDS-H-canaliculatus_F_contig13586:2151..2322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 2152..2322 +
1696845679.2314074-CDS-H-canaliculatus_F_contig13586:2151..23221696845679.2314074-CDS-H-canaliculatus_F_contig13586:2151..2322Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 2152..2322 +
1622929101.710026-CDS-H-canaliculatus_F_contig13586:2601..27001622929101.710026-CDS-H-canaliculatus_F_contig13586:2601..2700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 2602..2700 +
1696845679.239718-CDS-H-canaliculatus_F_contig13586:2601..27001696845679.239718-CDS-H-canaliculatus_F_contig13586:2601..2700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13586 2602..2700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13586.2896.1

>prot_H-canaliculatus_F_contig13586.2896.1 ID=prot_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
FDQRPYFRIFLNLVEEMNKPDRQLDNTNIQVLAAFASAFHALQPAACPGF
AFSWLELVSHRSFMPKLLMAKQNKGWSYMHRLLIDLLIFMEPHLRRPTLL
ESVRLLYQGMLRTLLVLLHDFPEFLSDYHLSFCDVIPPTCIQLRNLVLAA
FPRSMRLPDPFTPNLKVDLLPEIALAPRILSNYVAALSHNGIKQDLDKFL
QTRHQPVNFLAELPGKLRLSAHEAAHTGMTYNVSCINSLVVYVGSQAILQ
LNNKTP
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mRNA from alignment at H-canaliculatus_F_contig13586:221..2700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13586.2896.1 ID=mRNA_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13586:221..2700+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGACCAGAGGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGAT
GAACAAGCCGGACCGTCAGCTGGACAACACCAACATACAGGTGAACGCGC
GCGCGCACGTTGGTTCGTCAGATGTTACCGTTGCGTGCGAGTGACTCGTC
TGCGGCTGCAAGCGGGCGGTTGGTCGGTCGTGCCATCGAGGCGGGCGGGT
GTTGGAGGGAGGTTAAAGAGTCGATCGCATCGTCTGTTGGTGGTGCACGT
GTGTGCGTTAGAGTGGACCTGGTGTGCGAGGGTGCCGTGGCCGAGGCCAG
GTGGCGACAGAGGTCACACATACTTCCGGGGACGGCTAAACAGACGCTTT
GGGGAATGGATCGCGGAGGGGAGAGTGGATCGCATCCCCTGTTCTAACCC
GAGCATACCTACTTCTTTTGGAGAAAAAAGTCACCAACACCAATGGAACA
CGCTCCGCTGAGACAAATAATATGAAGATAGCGACTTGGGAGGATTTTTG
TTTCTTGCGAAAGGGAAACAGTACGTATCGTCTTGTGTGGCGACGGTCGC
GAAGGACGGCGATTTTCAGGCGGGCGTACTCGAGGACTTCGGGCGAAAAG
CGCGACAATCGTAGACGCCATCACTGGGAGTTCAATCGTCAGCCACCAGC
CCTAGACCACTACTTGGGTGCTCCGAGAAAGTCGTTCCTCTTGCGAGCAA
GTTCCAAAAGTGCCATCCAGAGATAGAACCGGCTTGTAGCAGCAGTACAA
GTACTTGTAGTCCGTGTCTTCCGGCCATCTTGCAGCATACCCCCCGGCTC
ACCCCCACCCCCCTCCCCGATTATTTTTCTGTTTGATCAGGTTTTGGCCG
CCTTTGCGTCTGCGTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTC
GCCTTCTCTTGGCTCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCT
CCTCATGGCGAAGCAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGA
TCGACCTCCTGATCTTCATGGAGCCCCACCTGCGCAGGTGTGTGTGCTTT
CTTCTATTGGGTTTCTGCGTCTATGCGAACGTGACTGACTTGTGTTTGTG
CGGTCCACTTGTATCCTACGGGCTGAGCACACGCCGAAACTCGTGCACTG
CTTGTGGGATGATCCCCCAGGCATCGACCGGTAGGCAAGTATTGGTCAGG
CGAGCAGCCCTCCAACTACACCTGTCTTCTGTCGGGTGATCGATTTCGAC
CCTTTCTTGCTCCCTCTCGCTTTGACAACTAAGAACATGGCGGAACGCAA
TCCCCATCCCCTTTGCCCCACCCAGGCCAACGCTGCTGGAGTCCGTGCGG
CTCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTACTGCACGACTT
CCCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGACGTGATCCCGC
CGACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTTCCCGCGCAGC
ATGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGTAAGGCGGAGGCT
GTCTTACGCTGCTACTGCTACTGTTGGCGATGCTGGACGCGCGTCGACGT
CGAATTTGCGTTTTTCGGCGGAGAGCTCCGTCGTGCATGTTGGTGTGCGC
AATACCGATTTTTATCCTCGGAAAACGTGTCGGAATCTTAGCGGGACACC
GAATCGGTCCGTCGATCGATCGTCCTTCCTTCTTACTCTTTGTTTTACGT
TTTCATTGTGTTCCTTGCGGTTTGTCGACGGGTGCGCAATCGATCGGGCG
CGACCGAATCAACCTATCGCGGGTCCGCACTCCCTTCGTGTCACAAAGTC
CGCAAGGATCCGTAACATTAACTCGCCCTTCCCACGCTGCCGACGTCCGT
GAACAACTGAAACCAAAATAATAAATTTAAGGTGGATCTTCTACCGGAGA
TTGCGCTTGCCCCGAGGATCCTGAGCAACTACGTGGCGGCGCTGTCCCAC
AACGGCATCAAGCAAGACCTGGACAAGTTCCTCCAGACCAGGCACCAGCC
TGTCAACTTCCTGGCCGAGCTACCGGGAAAGCTGAGGCTGTCGGCGCATG
AGGTATGCGCGTGTGTCTGTCTGTGTCTGTCTCGTCCGTAGGCATTTCCT
CTTTAATTCGTCGTCTGTGTCTCCTTGAGTCTTCATCGTGAGGGCGTCGG
CCCACCAATCAGACGACTCCAGGGTGAGCGTTTGTCTTGACGTGGGTTCG
GTTTCCTCTGTGGTAATTTTTTTTCCTTCAAAATGTTTTCGTCTCGTCGA
CCGGTAGATAAGCGAAAGGCCGTGCCGACAACTTGAACCTCTACCCGCTT
GCGTGTCTGGCATTTTGCTTGTCTGCTCCAGGCGGCGCACACGGGCATGA
CGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGGAAGCCAG
GCCATTCTGCAGCTCAACAACAAGACCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13586:221..2700+

>mRNA_H-canaliculatus_F_contig13586.2896.1 ID=mRNA_H-canaliculatus_F_contig13586.2896.1|Name=mRNA_H-canaliculatus_F_contig13586.2896.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13586:221..2700+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGACCAGAGGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGAT
GAACAAGCCGGACCGTCAGCTGGACAACACCAACATACAGTTCGACCAGA
GGCCGTATTTCAGGATCTTCCTCAACCTCGTCGAGGAGATGAACAAGCCG
GACCGTCAGCTGGACAACACCAACATACAGGTTTTGGCCGCCTTTGCGTC
TGCGTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTCGCCTTCTCTT
GGCTCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCTCCTCATGGCG
AAGCAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGATCGACCTCCT
GATCTTCATGGAGCCCCACCTGCGCAGGTTTTGGCCGCCTTTGCGTCTGC
GTTCCACGCGCTGCAGCCTGCGGCGTGCCCCGGCTTCGCCTTCTCTTGGC
TCGAGCTGGTGTCGCACCGCTCCTTCATGCCGAAGCTCCTCATGGCGAAG
CAGAACAAGGGCTGGTCTTACATGCACCGCCTCCTGATCGACCTCCTGAT
CTTCATGGAGCCCCACCTGCGCAGGCCAACGCTGCTGGAGTCCGTGCGGC
TCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTACTGCACGACTTC
CCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGACGTGATCCCGCC
GACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTTCCCGCGCAGCA
TGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGCCAACGCTGCTGGA
GTCCGTGCGGCTCTTGTACCAGGGCATGCTTCGCACGCTGCTGGTGCTAC
TGCACGACTTCCCGGAGTTCCTGTCGGACTACCACCTGAGCTTCTGCGAC
GTGATCCCGCCGACTTGCATCCAGCTGCGCAACCTCGTTCTGGCCGCTTT
CCCGCGCAGCATGCGTCTGCCGGACCCCTTCACGCCCAACCTCAAGGTGG
ATCTTCTACCGGAGATTGCGCTTGCCCCGAGGATCCTGAGCAACTACGTG
GCGGCGCTGTCCCACAACGGCATCAAGCAAGACCTGGACAAGTTCCTCCA
GACCAGGCACCAGCCTGTCAACTTCCTGGCCGAGCTACCGGGAAAGCTGA
GGCTGTCGGCGCATGAGGTGGATCTTCTACCGGAGATTGCGCTTGCCCCG
AGGATCCTGAGCAACTACGTGGCGGCGCTGTCCCACAACGGCATCAAGCA
AGACCTGGACAAGTTCCTCCAGACCAGGCACCAGCCTGTCAACTTCCTGG
CCGAGCTACCGGGAAAGCTGAGGCTGTCGGCGCATGAGGCGGCGCACACG
GGCATGACGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGG
AAGCCAGGCCATTCTGCAGCTCAACAACAAGACCCCGGCGGCGCACACGG
GCATGACGTACAACGTGTCTTGCATCAACTCCCTCGTGGTGTACGTGGGA
AGCCAGGCCATTCTGCAGCTCAACAACAAGACCCCG
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