mRNA_H-canaliculatus_F_contig13583.2895.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig13583.2895.1
Unique Name	mRNA_H-canaliculatus_F_contig13583.2895.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig13583.2895.1 vs. uniprot
Match: A0A6H5LDU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDU4_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.210e-50
Identity = 118/158 (74.68%), Postives = 120/158 (75.95%), Query Frame = 1

Query:   58 LAHDDGEGSG------GGRMSPLPSGGVGRAS-------TWGGLGSSSGTAFAAPSPTGGAPRTLPPAALAAAAVIREGGGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXXXAPAEERQATGAMHPLMASK 492
            L  D+ EG G       GRMSPL     GR         TWGGLGS SG  FAAPSPTG APRTLPPAALAAAAVIREG GSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXX  +P  E    GAMHPLMASK
Sbjct:  432 LGQDNAEGGGEXXXASSGRMSPL-----GRXXXXXXXXXTWGGLGSPSGAGFAAPSPTG-APRTLPPAALAAAAVIREGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXPASP--EETGKGAMHPLMASK 581

[Close]

BLAST of mRNA_H-canaliculatus_F_contig13583.2895.1 vs. uniprot
Match: D8LR84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR84_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.540e-30
Identity = 67/81 (82.72%), Postives = 69/81 (85.19%), Query Frame = 1

Query:  250 EGGGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQXXXXXXXAPAEERQATGAMHPLMASK 492
            EG GSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQ XXX   +P  +    G MHPLMASK
Sbjct:  351 EGSGSGARSPTWPLPRVIPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQXXXQPASP--DATGKGGMHPLMASK 429

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig13583.2895.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig13583.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LDU4_9PHAE	1.210e-50	74.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LR84_ECTSI	4.540e-30	82.72	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig13583	contig	H-canaliculatus_F_contig13583:800..2847 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	125.2
Seed ortholog evalue	2.9e-26
Seed eggNOG ortholog	2880.D8LR84
Preferred name	DCAF7
KEGG ko	ko:K11805
GOs	GO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
EggNOG free text desc.	epidermal cell fate specification
EggNOG OGs	KOG0290@1,KOG0290@2759
COG Functional cat.	M
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04121
Hectar predicted targeting category	other localisation
Ec32 ortholog description	WD40 repeat
Ec32 ortholog	Ec-06_003520.3
Exons	2
Model size	494
Cds size	492
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929101.5751777-CDS-H-canaliculatus_F_contig13583:801..885	1622929101.5751777-CDS-H-canaliculatus_F_contig13583:801..885	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13583 802..885 -
1696845679.1667876-CDS-H-canaliculatus_F_contig13583:801..885	1696845679.1667876-CDS-H-canaliculatus_F_contig13583:801..885	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13583 802..885 -
1622929101.5931027-CDS-H-canaliculatus_F_contig13583:2439..2847	1622929101.5931027-CDS-H-canaliculatus_F_contig13583:2439..2847	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13583 2440..2847 -
1696845679.180643-CDS-H-canaliculatus_F_contig13583:2439..2847	1696845679.180643-CDS-H-canaliculatus_F_contig13583:2439..2847	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig13583 2440..2847 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig13583.2895.1	prot_H-canaliculatus_F_contig13583.2895.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig13583 802..2847 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig13583:800..2847-
coding sequence from alignment at H-canaliculatus_F_contig13583:800..2847-

protein sequence of mRNA_H-canaliculatus_F_contig13583.2895.1

>prot_H-canaliculatus_F_contig13583.2895.1 ID=prot_H-canaliculatus_F_contig13583.2895.1|Name=mRNA_H-canaliculatus_F_contig13583.2895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
GASRSGSRAGSGDTDGSGSLAHDDGEGSGGGRMSPLPSGGVGRASTWGGL
GSSSGTAFAAPSPTGGAPRTLPPAALAAAAVIREGGGSGARSPTWPLPRV
IPEGSEISDQDAGGLLIDFFKSVHDKVKTASDELGEQQQQQQQQPAPAEE
RQATGAMHPLMASK

mRNA from alignment at H-canaliculatus_F_contig13583:800..2847-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig13583.2895.1 ID=mRNA_H-canaliculatus_F_contig13583.2895.1|Name=mRNA_H-canaliculatus_F_contig13583.2895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13583:800..2847- (Hapterophycus canaliculatus Oshoro5f female)
GGGGCATCACGCTCCGGATCCAGGGCGGGCTCTGGCGACACCGACGGCAG
CGGCAGTCTCGCCCACGACGACGGGGAGGGGAGCGGAGGCGGCCGCATGT
CCCCGCTCCCCAGCGGCGGGGTCGGCCGAGCGTCTACCTGGGGGGGGCTC
GGGAGCTCTTCCGGGACGGCGTTCGCGGCGCCGTCTCCGACGGGAGGGGC
CCCGCGGACGCTTCCCCCCGCGGCGCTCGCGGCGGCGGCCGTCATCAGGG
AAGGGGGCGGTAGCGGCGCTCGGTCTCCCACCTGGCCGCTGCCCCGGGTG
ATCCCCGAAGGGTCGGAGATCTCGGACCAGGACGCGGGCGGGCTGCTGAT
CGACTTCTTCAAGTCCGTTCACGACAAGGTCAAGACGGCCTCCGACGAGC
TCGGCGAGGTAAGGGGGGGGTGGAGTGCTTAGTGGAAGGCGATCGGATCT
GCCAATGAGGGATGGGTTCCAGGGGATGGGTGCTGTCTTCTGTTGCCGTG
CTGTGTGTATATGCGCAGGAAGTCCTGATTCCTGACGGAGGTGTCGGAAC
ACCGAGGGTGCTGGCATACCTTGAGTGCGGCTCGTGGGCGGACACGCCCT
TTTGCGGGAGGAGGAGGCGGGGGTTGAGGTTGCGAGGGGCGTGACGCCTC
CGACGTTCTTCATGCCTCACGTGACGGTGGAAAGAAAAACGGGCAGGCGG
GAGTTGAGGTTGAGCCCGAACAAGGTCGAAACCCCTTAAGGGTTGGGAAA
TGTTTTGGGTGTTGGACTGCCACCCCCCCCCCCCCCGCCCTTGGCCTTCA
AGAGAAAGAAGAAGCATCGTTCCTGGGCAGGCGCGGTGGAACTCCTTTAT
TGCTGGTTCTGTTGCTGGTGCTGGTGCTGGGTCTGATCGAAGTGTTGAAT
CGTCTTGGGTTAACTCGTATAATTCTCGTTGGTACGAGGTCGACCGGCCT
GGCGTGGCCCGCCTTCTCGCGGCGTCATGGCGCTCTCGAGGCTCCCCCTC
GTCTGGGTGTCAACGTCGACGAATCGTCACGTGCTCTGTTGTCCCGCATC
GCATCGCCTGTTGTGCAGGGTGTAGGGTTTAGGGTCTTACCTCCGTATTC
TGTGACATGTCGCCTTTGGTAGCACCAACGGCGAAAAAAGGTACAAACAC
TTATGTCTCAACCCCTTTGGTTGTGAACTATTTTCTCTGTTCCTAGAATA
TAAAACGAGCAAAATCATAACAAGAAAAATGTCTCGTCTGATGCCATAAA
TTTTTTTCCCACGATACTGACCGTTCACTGTAAGAAATTCAACAAAAATC
AGAGAGCCTCCTGGGTCGTTATTAATTTTGTCTTGGGGGAGGGTATTCGT
TTGGTGGTGTTGTTGTTGACTCTTTTTAAGAAAACCCTTGATTTTGTTCT
AACACCGGGCGGAGGGCCATCACAGCTGCGATCTTCGTCGGCATGTGCAC
GTTGTTTTTGTCGTGAGTCAGCATCCTCGGCGAGAGGCAGGCAGTGTTAC
CATCGGCGCCATCCAGCGAAACTGTTGACGGTGGGCGTCTCGAGAATCGA
TCAAATCGAGTCCGTTCAAGTCGCCCTCTTGATACCTGTTTCTCCTTTTG
CCACCTCGTCGTAACCCGCTGAGCTTGGCGTGTTCTATCCCTGAGAGTGC
ACAGCGATTAAGAAGATATCCCTCCCCTACTGTAGCTGCCGTTGATGTCA
CGAGGGAAGTGTACTGCCTCTCATGGACAAAAAGTACGATCACACATGGG
GGTGCTTCCAGCGGAAAGCCGGGATGGCACGCTATCTCGTCGCAGCAGCT
CTTGCTGCAGCGGAGCACAGGCGGCATTTTTCTTCGGTTGCGAAATCTTG
GTGCCTCACCCGCGACCAGACTAGAGCGTGCGTCTCTCTCTCTTGTCTGA
CAACATCCATCCTCGGCCCTTCCGTTTGCGCCTTCGTCTGCAATGCGCTG
CGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGCGCCTGCAGA
GGAGCGGCAGGCGACGGGAGCGATGCACCCGCTCATGGCCAGCAAGCG

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13583:800..2847-

>mRNA_H-canaliculatus_F_contig13583.2895.1 ID=mRNA_H-canaliculatus_F_contig13583.2895.1|Name=mRNA_H-canaliculatus_F_contig13583.2895.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13583:800..2847- (Hapterophycus canaliculatus Oshoro5f female)
GGGGCATCACGCTCCGGATCCAGGGCGGGCTCTGGCGACACCGACGGCAG
CGGCAGTCTCGCCCACGACGACGGGGAGGGGAGCGGAGGCGGCCGCATGT
CCCCGCTCCCCAGCGGCGGGGTCGGCCGAGCGTCTACCTGGGGGGGGCTC
GGGAGCTCTTCCGGGACGGCGTTCGCGGCGCCGTCTCCGACGGGAGGGGC
CCCGCGGACGCTTCCCCCCGCGGCGCTCGCGGCGGCGGCCGTCATCAGGG
AAGGGGGCGGTAGCGGCGCTCGGTCTCCCACCTGGCCGCTGCCCCGGGTG
ATCCCCGAAGGGTCGGAGATCTCGGACCAGGACGCGGGCGGGCTGCTGAT
CGACTTCTTCAAGTCCGTTCACGACAAGGTCAAGACGGCCTCCGACGAGC
TCGGCGAGGGGGCATCACGCTCCGGATCCAGGGCGGGCTCTGGCGACACC
GACGGCAGCGGCAGTCTCGCCCACGACGACGGGGAGGGGAGCGGAGGCGG
CCGCATGTCCCCGCTCCCCAGCGGCGGGGTCGGCCGAGCGTCTACCTGGG
GGGGGCTCGGGAGCTCTTCCGGGACGGCGTTCGCGGCGCCGTCTCCGACG
GGAGGGGCCCCGCGGACGCTTCCCCCCGCGGCGCTCGCGGCGGCGGCCGT
CATCAGGGAAGGGGGCGGTAGCGGCGCTCGGTCTCCCACCTGGCCGCTGC
CCCGGGTGATCCCCGAAGGGTCGGAGATCTCGGACCAGGACGCGGGCGGG
CTGCTGATCGACTTCTTCAAGTCCGTTCACGACAAGGTCAAGACGGCCTC
CGACGAGCTCGGCGAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGCGCCTG
CAGAGGAGCGGCAGGCGACGGGAGCGATGCACCCGCTCATGGCCAGCAAG
CAGCAGCAGCAGCAGCAGCAGCAGCCGGCGCCTGCAGAGGAGCGGCAGGC
GACGGGAGCGATGCACCCGCTCATGGCCAGCAAG