mRNA_H-canaliculatus_F_contig13582.2894.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13582.2894.1
Unique NamemRNA_H-canaliculatus_F_contig13582.2894.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13582.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13582contigH-canaliculatus_F_contig13582:1676..1990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.493947-UTR-H-canaliculatus_F_contig13582:1675..16901622929101.493947-UTR-H-canaliculatus_F_contig13582:1675..1690Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13582 1676..1690 +
1696845679.1498728-UTR-H-canaliculatus_F_contig13582:1675..16901696845679.1498728-UTR-H-canaliculatus_F_contig13582:1675..1690Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13582 1676..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.5140364-CDS-H-canaliculatus_F_contig13582:1690..19901622929101.5140364-CDS-H-canaliculatus_F_contig13582:1690..1990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13582 1691..1990 +
1696845679.1578019-CDS-H-canaliculatus_F_contig13582:1690..19901696845679.1578019-CDS-H-canaliculatus_F_contig13582:1690..1990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13582 1691..1990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13582.2894.1prot_H-canaliculatus_F_contig13582.2894.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13582 1691..1990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13582.2894.1

>prot_H-canaliculatus_F_contig13582.2894.1 ID=prot_H-canaliculatus_F_contig13582.2894.1|Name=mRNA_H-canaliculatus_F_contig13582.2894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MRSRGNQAFDVAVTVLHPGFRNRSRDRSRKLLCRKRLRISYHLANCLGRC
VLRWDEQGIITRSRIRPSSFAFLPGPSRTHNDTHMRAPKQIGCQFTTSPA
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mRNA from alignment at H-canaliculatus_F_contig13582:1676..1990+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13582.2894.1 ID=mRNA_H-canaliculatus_F_contig13582.2894.1|Name=mRNA_H-canaliculatus_F_contig13582.2894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=315bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13582:1676..1990+ (Hapterophycus canaliculatus Oshoro5f female)
AGATGACGTTCGAGAATGCGAAGTCGGGGTAACCAAGCGTTCGACGTCGC
GGTGACTGTACTCCACCCCGGTTTTCGGAATAGATCGAGGGATAGATCGA
GAAAGTTGCTTTGTCGGAAACGGCTGCGCATCTCTTATCACCTCGCGAAC
TGTCTCGGGCGGTGTGTTCTCAGATGGGATGAGCAGGGCATCATCACTCG
GTCCAGAATCCGGCCATCCTCTTTTGCCTTTCTTCCAGGACCCAGCCGGA
CCCACAATGACACACACATGCGTGCTCCCAAGCAGATTGGCTGCCAATTT
ACCACGTCCCCTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13582:1676..1990+

>mRNA_H-canaliculatus_F_contig13582.2894.1 ID=mRNA_H-canaliculatus_F_contig13582.2894.1|Name=mRNA_H-canaliculatus_F_contig13582.2894.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13582:1676..1990+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGAAGTCGGGGTAACCAAGCGTTCGACGTCGCGGTGACTGTACTCCA
CCCCGGTTTTCGGAATAGATCGAGGGATAGATCGAGAAAGTTGCTTTGTC
GGAAACGGCTGCGCATCTCTTATCACCTCGCGAACTGTCTCGGGCGGTGT
GTTCTCAGATGGGATGAGCAGGGCATCATCACTCGGTCCAGAATCCGGCC
ATCCTCTTTTGCCTTTCTTCCAGGACCCAGCCGGACCCACAATGACACAC
ACATGCGTGCTCCCAAGCAGATTGGCTGCCAATTTACCACGTCCCCTGCC
ATGCGAAGTCGGGGTAACCAAGCGTTCGACGTCGCGGTGACTGTACTCCA
CCCCGGTTTTCGGAATAGATCGAGGGATAGATCGAGAAAGTTGCTTTGTC
GGAAACGGCTGCGCATCTCTTATCACCTCGCGAACTGTCTCGGGCGGTGT
GTTCTCAGATGGGATGAGCAGGGCATCATCACTCGGTCCAGAATCCGGCC
ATCCTCTTTTGCCTTTCTTCCAGGACCCAGCCGGACCCACAATGACACAC
ACATGCGTGCTCCCAAGCAGATTGGCTGCCAATTTACCACGTCCCCTGCC
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