mRNA_H-canaliculatus_F_contig1358.2892.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1358.2892.1 vs. uniprot
Match: D8LJR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR8_ECTSI) HSP 1 Score: 449 bits (1154), Expect = 9.140e-143 Identity = 376/849 (44.29%), Postives = 451/849 (53.12%), Query Frame = 1
Query: 1 PQKDPTLFPESRVRPWVVDKEAERKMEDMFDSLEKTLSFVSPVKDGLGVSTLDRTLGCDNSGELFFQELASLEARKRAKSAGGSARICGISNICEIFQDLYRENHGLPPRKGKDTLARMCGGFDDNTRSGEHRG---IEGEVTVAASIAEG----ERGDDPGDSGENDVGEEDGLAADPEVARLLAELQVELNGD---CSDGSGTDGGGEVEE---------------------DRTWDEDGEEKGEVEGQEKDEGDDGVVGRVEAEGNGKKAQXXXXXXXLTESA-AARGKTVDGRVLLLREGQQDDRQRQEEGGRVDISRIKIDGPRRQTRPRSAPSACPSAGELSRVSSRTCSSSQLARMVSQKLLQATKEAEEQREVLPD--------------GEAAAPPRPCTPASAIACADGRINVVKRNAEALQASMSVKRTSYLNARQPRAVRWSPRDPDLFPGRTHRHSSPRRALCSVQPPSATVRQRPKTAVPLNRPGGLGSGRSIDNGNGNGNDRPLLSSREAAFLFGGQAATGATAAGK---------DGVSHQTPSLRTTTLGRMLRRSSASALATSSSAGDSRTDARPALSEC--SSASSLYRRPLSADDGGRRSHYPLGDSGCARRRKEVKVKGSSSSPKLNPRTKACFRDKATGTATAVARVKRRPRSAAPSSCRRGGDRPSLLSEYARGYRNEISSARNS---------------------EGSGGKTSVAKT-------SAMINGCR-EGSGLPEETGGRTSEPPA--MNARQALEATIKAAIDVVPPLEQFVSARKTIAEMKEINTKDSTGDTVITTQGMSKARIAEDCWTSEAERQYR 2283
P++DP LFPE RVRPWVVD +AERKME++ D LE+TL+ +SPVK+G+G S LDRTL DNSGELFF+ELASLEA+ RAK AG ++ + I EIF+DLYRE HGLPPR + G + N R E G +E AA++ +G RG D G GE LA DP+V RLLAELQ L D CSDGS + GGE + DR D++G+E DE DG NG + ESA AA GK R R G+ + E RVDISR+KIDG Q RPRSAPSAC SAG SR+SSR SSS+LAR VSQ+L++AT+E E QR P+ GEA RP T AS IA AD RI+VVK+NAEALQASMSVKRT YLN+R+PRA RWSPRD DL G + S+PR A S PP A VRQRPKTAV NR + R NGN PLL+ RE FLFG A AA D VS + PSLR TTLGRMLRRSSAS+ + S+ R + RP LSEC SSASSLYRRPLSA + S + A R + +S K A A R KR + ++S+A+T + GC G G GG PA MNARQALEATI+ A+D V P+EQFV+ARKTIA+MK+INTKDSTGD +++TQGM+KARIA+DCW+SEA+RQYR
Sbjct: 9 PEEDPALFPERRVRPWVVDDDAERKMEELRDDLERTLTSISPVKEGMGESILDRTLRSDNSGELFFKELASLEAKDRAKVAGVTSGCVSLYPIGEIFEDLYRETHGLPPRNQNHAYVQHEGD-EGNCRPEEIHGAPEVESSAPPAAAVRKGGGRGSRGHDGG-GGEGCCE----LATDPDVVRLLAELQAGLVDDPNCCSDGSDAELGGEGKXXXXXXXXXXXXXXXXXXXXXGDRXTDQEGQEAA------GDETKDGT--------NGPRLASEEQHPAGGESAEAAAGKE---RASSPRGGEHHN---PEVVRRVDISRMKIDGGGPQARPRSAPSACLSAGGFSRLSSRASSSSRLARAVSQRLMEATREVEGQR--APEAQGGGGDCDRGAGRGEATGRLRPSTSASRIAQADERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPLGPRGQPSAPRAASHSAAPPPAAVRQRPKTAVAKNRRPRPHNNRGHAGNTNNGN--PLLNHRETEFLFGAGTAPEVVAAXXXXXXXXXXXDDVSRRAPSLRKTTLGRMLRRSSASSFSPSNGGDVRRRNVRPELSECGSSSASSLYRRPLSAGNACSGSLFLEDGKRRAGRGTAQAIDDDTSCAKHTLGGMPRAGKHAAVAQAAATRAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSPAARSSLARTRGDRHEAATAAQGCGYHGVGAAPAAGGSAEREPAAMMNARQALEATIREAVDTVSPVEQFVNARKTIADMKQINTKDSTGDILLSTQGMTKARIADDCWSSEAQRQYR 827
BLAST of mRNA_H-canaliculatus_F_contig1358.2892.1 vs. uniprot
Match: A0A6H5KY38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY38_9PHAE) HSP 1 Score: 352 bits (902), Expect = 3.070e-106 Identity = 337/812 (41.50%), Postives = 417/812 (51.35%), Query Frame = 1
Query: 76 MEDMFDSLEKTLSFVSPVKDGLGVSTLDRTLGCDNSGELFFQELASLEARKRAKSAGGSARICGISN--ICEIFQDLYRENHGLPPRKGKDTLARMCGGFDDNTRSGEHRGI-EGEVTVAASIA---EGERGDDPGDSGENDVGEEDGLAADPEVARLLAELQVELNGD---CSDGSGTDGGGEV---------------------EEDRTWDEDGEEKGEVEGQEKDEGDDGVVGRVEAEGNGKKAQXXXXXXXLTESAAARGKTVDGRVLLLREGQQDDRQRQEEGGRVDISRIKIDGPRRQTRPRSAPSACPSAGELSRVSSRTCSSSQLARMVSQKLLQATKEAEEQREVLPD--------------GEAAAPPRPCTPASAIACADGRINVVKRNAEALQASMSVKRTSYLNARQPRAVRWSPRDPDLFPGRTHRHSSPRRALCSVQPPSATVRQRPKTAVPLNRPGGLGSGRSIDNGNGNGNDRPLLSSREAAFLFGGQAATGATAAGKDGVSHQT---------PSLRTTTLGRMLRRSSASALATSSSAGDSRTDARPALSEC--SSASSLYRRPLSA----------DDGGRRSHYPLGDSGCARRRKEVKVKGSSSSPKLNPRTKACFRDKATGTATAVARVKRRPRSAAPSS---------------------CRRGGDRPSLLSEYARGYRNEISSARNSEGSGGKTSVAKTS---------AMINGCREGSGLPEETGGRTSEPPA--MNARQALEATIKAAIDVVPPLEQFVSARKTIAEMKEINTKDSTGDTVITTQ 2220
ME++ D LE+TL+ +SP+K+G S LDRTL DNSGELFF+ELASLEA+ R K AG + C +S I EIF++LYRE HGLPPRK + G + N+R EH G+ E E + ++A EG RG D G E LAADP+V RLLA+LQ L D CSDGS T+ GGE E DR D+ G+E E G E ++G +G R+ +E XXXXXXX ++R RVDISR+KIDG Q RPRSAPSAC SAG SR+SSR SSS+LAR +SQ+L++AT+E E QR P+ GEAA RP T AS IA A+ RI+VVK+NAEALQASMSVKRT YLN+R+PRA RWSPRD DL G + S R A S PP + VR+RPKTAV NR + R NGN PLL+ RE FLFG A A PSLR TTLGRMLRRSSAS+ + S+ R + RP LSEC SSASSLYRRPLSA +DG RR+ R + G+S + + A A A RV+RRP SAAP + +G ++S+A+T A +G G G R P MNARQALEATI+ A+D V P+EQFV+ARKTI +MK+INT+D+TGD +++TQ
Sbjct: 1 MEELRDDLERTLTSISPIKEGTSESILDRTLRSDNSGELFFKELASLEAKDRTKVAGVAPGGC-VSQYPIGEIFENLYRETHGLPPRKQNHAYVQDDGD-EGNSRPEEHHGVPEVESSAPPAVAVRDEGGRGSRHHDGGGEGYCE---LAADPDVVRLLAQLQAGLVDDPNCCSDGSDTEVGGEGKXXXXXXXXXXXXXGKKRETDEGDRGADQGGQE--EAAGDETNDGTNGP--RLASEEQHPXXXXXXXXXXXXXXXXXXXXXXXHNPKVVR--------------RVDISRMKIDGIDPQARPRSAPSACLSAGGFSRLSSRASSSSRLARTMSQRLMEATREVEGQR--APEAQGGGVDCGRGAGRGEAAGRLRPSTSASRIALAEERIDVVKQNAEALQASMSVKRTRYLNSRKPRAARWSPRDRDLPVGSRGQPSGTRAASRSGAPPPSAVRERPKTAVAKNRRHCPHNSRGHAGNTNNGN--PLLNRRETEFLFGAGTAPEVAAXXXXXXXXXXXXXXXXXXXPSLRKTTLGRMLRRSSASSFSPSNGGDVRRRNVRPELSECNSSSASSLYRRPLSAGIACSGSLFLEDGQRRA---------GRGTAQAIDHGTSCAKHTLGAVPRAGKHAAVAQAAAT-RVRRRPSSAAPGNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGPAARSSLAQTRGDHHEAAAVASHGWGDQGVGATPAAGERAGREPTAMMNARQALEATIREAVDTVSPVEQFVNARKTITDMKQINTQDTTGDILLSTQ 775 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1358.2892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1358.2892.1 >prot_H-canaliculatus_F_contig1358.2892.1 ID=prot_H-canaliculatus_F_contig1358.2892.1|Name=mRNA_H-canaliculatus_F_contig1358.2892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=762bp PQKDPTLFPESRVRPWVVDKEAERKMEDMFDSLEKTLSFVSPVKDGLGVSback to top mRNA from alignment at H-canaliculatus_F_contig1358:20098..24578+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1358.2892.1 ID=mRNA_H-canaliculatus_F_contig1358.2892.1|Name=mRNA_H-canaliculatus_F_contig1358.2892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4481bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1358:20098..24578+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1358:20098..24578+ >mRNA_H-canaliculatus_F_contig1358.2892.1 ID=mRNA_H-canaliculatus_F_contig1358.2892.1|Name=mRNA_H-canaliculatus_F_contig1358.2892.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4572bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1358:20098..24578+ (Hapterophycus canaliculatus Oshoro5f female)back to top |