mRNA_H-canaliculatus_F_contig1358.2891.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Match: D8LJR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR9_ECTSI) HSP 1 Score: 615 bits (1586), Expect = 1.090e-207 Identity = 353/527 (66.98%), Postives = 385/527 (73.06%), Query Frame = 2
Query: 671 SYFSGDAVQAVLDAVDSYATSAKKTLEADELAVSQGRPLQGKYIVLDSGNELANRLRGVLSGFFLGALTDRVFVADITYQKDVTDGLLSALFEGPGYEWDLSKLSPQLRRALAPKAAFP--GKVRGRTNGGGGGTILHFDMSEEHFQRWACEDVVK-QASPSSG-VPA-SVVTLSTVVYPLPLLARNSCYASHPLVLAATAAVAGEGTAPQHALGGAGGGRVGQPPADGDDEEGVMRQRGLEVLETLLTRIVLRPKRELRERARKLAGVVRERAEKWAAERDSRGLGRWGSPAQRTPVRVVGLHVRTHFVRAVSDDT-LERNLQHFEHCAVAGRGGASREDAAAVTFYFVATDEVNTQAAASKVWGDGCYFAPFDLPGSKLEGIKAAVVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPRAALRTLPNRPIVPLFPQMNEFERRKAFSLLDRRAVEIVPPP-------AGG--------GLCMRSHVAGMSVAVARGRELLSMFEAIEDAPCMKGKGDSIAAL 2188
S+ S AV+AV+ AV+SYA AK+TLEADE+AV QGRPLQGKYIVLDSGNEL NRLRGV+SGFFLG LTDRVFVADITYQKD T GLLSALFEGPGYEWDLSKLSP LR ALAP P GK+RG +G L FDMS+EHF+ W C DVV+ + SP G PA +VVTLSTVVYPLPLLARN YASHP+ AA A GGG GQ G V+ QRG+E LETLLTR+VLRP RELRERAR LA VRERA +W G PVR+VGLHVRT+FV+A+S T LERNLQHF+ CAVAG G + D + TFYFVATDE NTQAAA KVWGDGCYF PF LPGSKLEGIKAA VDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDP ALRT PNRPIVPLFPQ N+FERRK FSLLDRRAVEI P AGG G+CMR+H AGMSV VA GR+LLSMFEA+E APCMKGK +IA L
Sbjct: 106 SFLSEGAVEAVVGAVESYADFAKRTLEADEVAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGVLTDRVFVADITYQKDGTQGLLSALFEGPGYEWDLSKLSPGLRGALAPNKKKPPRGKIRGGASGSD--ATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAGAVVTLSTVVYPLPLLARNPAYASHPIFQAAAA----------------GGGAEGQKNPGGT----VVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERANEWG-----------GXXXXGRPVRIVGLHVRTYFVKAISTATKLERNLQHFDDCAVAGSGDGA--DTGSSTFYFVATDEANTQAAAKKVWGDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPETALRTPPNRPIVPLFPQTNDFERRKVFSLLDRRAVEIFPSDDGQVVAAAGGAGXXSSGKGMCMRAHAAGMSVTVAIGRQLLSMFEAMEGAPCMKGKDTTIADL 597
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Match: A0A6H5L5F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F2_9PHAE) HSP 1 Score: 459 bits (1180), Expect = 7.000e-150 Identity = 270/428 (63.08%), Postives = 294/428 (68.69%), Query Frame = 2
Query: 965 WDLSKLSPQLRRALAPKAAFP--GKVRGRTNGGGGGTILHFDMSEEHFQRWACEDVVK-QASPSSG-VPA-SVVTLSTVVYPLPLLARNSCYASHPLVLAATAAVAGEGTAPQHALGGAGGGRVGQPPADGDDEEGVMRQRGLEVLETLLTRIVLRPKRELRERARKLAGVVRERAEKWAAERDSRGLGRWGSPAQRTPVRVVGLHVRTHFVRAVSDDTLERNLQHFEHCAVAGRGGASREDAAAVTFYFVATDEVNTQAAASKVWGDGCYFAPFDLPGSKLEGIKAAVVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPRAALRTLPNRPIVPLFPQMNEFERRKAFSLLDRRAVEIVPPP-------AGG--------GLCMRSHVAGMSVAVARGRELLSMFEAIEDAPCMKGKGDSIAAL 2188
WDLSKLSP LR ALAP P GK+RG +G L FDMS+EHF+ W C DVV+ + SP G PA +VVTLSTVVYPLPLLARN YASHP+ AA A E V + P V+ QRG+E LETLLTR+VLRP RELRERAR LA VRERA+KW E G PVR+VGLHVRT+FV+A+S TLER+LQHF+ CAVAG TFYFVATDE NTQAAA KVW DGCYF PF LPGSKLEGIKAA VDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDP AALRT PNRPIVPLFPQ NEFERRK FSLLDRRAVEI P AGG G+CMR+H AGMSV VA GR+LLSMFEAIE APCMKGK ++A L
Sbjct: 4 WDLSKLSPGLRGALAPNKKKPPRGKIRGGRSGSD--ATLLFDMSKEHFEHWVCHDVVEGRGSPGQGGSPAVAVVTLSTVVYPLPLLARNPAYASHPIFQAAAAGWTAE---------------VEKNPGGA-----VVGQRGVEALETLLTRVVLRPTRELRERARGLADRVRERAKKWGGEGGKGG-----------PVRIVGLHVRTYFVKAISTATLERDLQHFDDCAVAGSXXXXXXXXXXSTFYFVATDEANTQAAAKKVWEDGCYFEPFTLPGSKLEGIKAAFVDLLVMGSFDDYVMTPHSSFSELGATLSHTWLPDPEAALRTPPNRPIVPLFPQTNEFERRKVFSLLDRRAVEIFPSDGGEVVAAAGGAGAGSSGRGMCMRAHAAGMSVTVAIGRQLLSMFEAIEGAPCMKGKETTVADL 398
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Match: A0A6H5KKD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD8_9PHAE) HSP 1 Score: 154 bits (388), Expect = 2.690e-38 Identity = 79/98 (80.61%), Postives = 85/98 (86.73%), Query Frame = 2
Query: 671 SYFSGDAVQAVLDAVDSYATSAKKTLEADELAVSQGRPLQGKYIVLDSGNELANRLRGVLSGFFLGALTDRVFVADITYQKDVTDGLLSALFEGPGYE 964
S+ S AV+AV+ V+SYA A+ TLEADELAV QGRPLQGKYIVLDSGNEL NRLRGV+SGFFLG LTDRVFVADITYQKD T GLLSALFEGPGYE
Sbjct: 106 SFLSEGAVKAVVGTVESYADFARGTLEADELAVQQGRPLQGKYIVLDSGNELVNRLRGVMSGFFLGMLTDRVFVADITYQKDGTQGLLSALFEGPGYE 203
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Match: X6MJI9_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MJI9_RETFI) HSP 1 Score: 66.6 bits (161), Expect = 2.460e-8 Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query: 1601 DTLERNLQHFEHCAVAGRGGASREDAAAVTFYFVATDEVNTQAAASKVWGDG-CYFAPFDLPGSKLEGIKAAVVDLLVMGSFDDYVMTPHSSFSELGATL 1897
+ L + F HC G R+ F + A D Q+ A V+G YF PF L GS L+GI AVVDL+ + SFD ++ TPHSS+SE+ + L
Sbjct: 12 EALRAEYEWFAHC---GNQVVPRKYRNKPLFIYFAADTAKAQSFAESVFGKHRVYFRPFVLKGSTLQGIIDAVVDLVTVSSFDTFISTPHSSYSEMSSLL 108
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Match: X6NG83_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NG83_RETFI) HSP 1 Score: 60.8 bits (146), Expect = 1.510e-6 Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query: 1691 FYFVATDEVNTQAAASKVWG-DGCYFAPFDLPGSKLEGIKAAVVDLLVMGSFDDYVMTPHSSFSELGATL 1897
F F A D Q A++V+G D + PF L G+ L+GI AVVDL+ + SFD ++ TPHSS+SE+ + L
Sbjct: 7 FIFFAGDTAQAQEFATQVFGKDRVSYRPFLLKGNSLQGIIDAVVDLVTVSSFDAFISTPHSSYSEMSSLL 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1358.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1358.2891.1 >prot_H-canaliculatus_F_contig1358.2891.1 ID=prot_H-canaliculatus_F_contig1358.2891.1|Name=mRNA_H-canaliculatus_F_contig1358.2891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=711bp MSFRSRLPSMRDGHSKGRAHARSSSRTSGDHPARRSGRPSILRPLLAGMVback to top mRNA from alignment at H-canaliculatus_F_contig1358:10459..18830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1358.2891.1 ID=mRNA_H-canaliculatus_F_contig1358.2891.1|Name=mRNA_H-canaliculatus_F_contig1358.2891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1358:10459..18830+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1358:10459..18830+ >mRNA_H-canaliculatus_F_contig1358.2891.1 ID=mRNA_H-canaliculatus_F_contig1358.2891.1|Name=mRNA_H-canaliculatus_F_contig1358.2891.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4266bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1358:10459..18830+ (Hapterophycus canaliculatus Oshoro5f female)back to top |