mRNA_H-canaliculatus_F_contig13577.2890.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13577.2890.1
Unique NamemRNA_H-canaliculatus_F_contig13577.2890.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13577.2890.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.430e-10
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 2 
Query:   56 WEDEHPVEPALRFSIPRRVYRATPAVTRSKAAEVLRSGVVNTDLPGAFAMLAAEEEMLHETSG--APDYDTLPPNKLVSELPTPKMDAEANVGPYRKHFSEARVKEMAGLKAGG 391
            W D +   P  R +  R+ +  TPAVTRS        G   T +PGAFA+LAA+E+M    SG  A   D   PN LV++L TP+   +A+ GP+   +  A  KE+AGL A G
Sbjct:  583 WADIYHAPPERRMTH-RQQHEVTPAVTRS--------GSRRTGMPGAFALLAADEQMTRSLSGPTADIDDPALPNGLVADLETPETYKQAHAGPHDVIWRAAERKEIAGLSAAG 687
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13577.2890.1 vs. uniprot
Match: A0A6H5L6D3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.440e-10
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:   56 WEDEHPVEPALRFSIPRRVYRATPAVTRSKAAEVLRSGVVNTDLPGAFAMLAAEEEMLHETSG--APDYDTLPPNKLVSELPTPKMDAEANVGPYRKHFSEARVKEMAGLKAGG 391
            W D +   P  R +  R+ +  TPAVTRS        G   T +PGAFA+LAA+E+M    SG  A   D   PN LV +L TP+   +A+ GP+   +  A  KE+AGL A G
Sbjct:  512 WADIYHAPPERRMTH-RQQHEVTPAVTRS--------GSRRTGMPGAFALLAADEQMTRSLSGPTADIDDPALPNGLVPDLETPETYKQAHAGPHDVIWRAAERKEIAGLSAAG 616
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13577.2890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE4.430e-1040.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6D3_9PHAE7.440e-1040.35Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13577contigH-canaliculatus_F_contig13577:2066..2609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size544
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13577.2890.1prot_H-canaliculatus_F_contig13577.2890.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13577 2268..2573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.9740405-UTR-H-canaliculatus_F_contig13577:2065..22671622929100.9740405-UTR-H-canaliculatus_F_contig13577:2065..2267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13577 2066..2267 +
1696845678.8993568-UTR-H-canaliculatus_F_contig13577:2065..22671696845678.8993568-UTR-H-canaliculatus_F_contig13577:2065..2267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13577 2066..2267 +
1622929101.003941-UTR-H-canaliculatus_F_contig13577:2573..26091622929101.003941-UTR-H-canaliculatus_F_contig13577:2573..2609Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13577 2574..2609 +
1696845678.9200943-UTR-H-canaliculatus_F_contig13577:2573..26091696845678.9200943-UTR-H-canaliculatus_F_contig13577:2573..2609Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13577 2574..2609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.990787-CDS-H-canaliculatus_F_contig13577:2267..25731622929100.990787-CDS-H-canaliculatus_F_contig13577:2267..2573Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13577 2268..2573 +
1696845678.907209-CDS-H-canaliculatus_F_contig13577:2267..25731696845678.907209-CDS-H-canaliculatus_F_contig13577:2267..2573Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13577 2268..2573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13577.2890.1

>prot_H-canaliculatus_F_contig13577.2890.1 ID=prot_H-canaliculatus_F_contig13577.2890.1|Name=mRNA_H-canaliculatus_F_contig13577.2890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MLAAEEEMLHETSGAPDYDTLPPNKLVSELPTPKMDAEANVGPYRKHFSE
ARVKEMAGLKAGGRKEFRIVHVPTELQQADFLMKPLHIGPFYMHRQFAMN
L*
back to top

mRNA from alignment at H-canaliculatus_F_contig13577:2066..2609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13577.2890.1 ID=mRNA_H-canaliculatus_F_contig13577.2890.1|Name=mRNA_H-canaliculatus_F_contig13577.2890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=544bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13577:2066..2609+ (Hapterophycus canaliculatus Oshoro5f female)
ACCGGCAGCCCCTGACGCGACGCAGGTCAGGTTCTCCCCCGACTCCCCGA
CGTACTGGGAGGACGAGCATCCCGTTGAGCCTGCTCTTAGATTTTCAATA
CCGCGCAGGGTGTACCGTGCGACGCCGGCGGTGACGCGATCGAAGGCTGC
CGAGGTGCTGCGATCAGGCGTGGTCAACACAGACCTTCCTGGGGCGTTTG
CCATGCTTGCCGCAGAGGAGGAGATGCTTCACGAGACGAGCGGAGCACCC
GACTACGACACCTTGCCGCCAAACAAGCTGGTCTCGGAACTGCCGACACC
GAAGATGGATGCAGAGGCGAACGTGGGACCCTACCGGAAGCATTTCAGCG
AGGCACGGGTGAAGGAGATGGCCGGGCTCAAAGCAGGGGGACGAAAGGAG
TTCCGCATTGTCCACGTGCCTACCGAGTTGCAGCAAGCAGACTTTCTCAT
GAAGCCGCTGCACATCGGTCCTTTCTACATGCACAGGCAATTTGCGATGA
ACCTGTAGCCGCGTGCGGTCTCCATCTGTTCTGTGTGGGCTTTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13577:2066..2609+

>mRNA_H-canaliculatus_F_contig13577.2890.1 ID=mRNA_H-canaliculatus_F_contig13577.2890.1|Name=mRNA_H-canaliculatus_F_contig13577.2890.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13577:2066..2609+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTGCCGCAGAGGAGGAGATGCTTCACGAGACGAGCGGAGCACCCGA
CTACGACACCTTGCCGCCAAACAAGCTGGTCTCGGAACTGCCGACACCGA
AGATGGATGCAGAGGCGAACGTGGGACCCTACCGGAAGCATTTCAGCGAG
GCACGGGTGAAGGAGATGGCCGGGCTCAAAGCAGGGGGACGAAAGGAGTT
CCGCATTGTCCACGTGCCTACCGAGTTGCAGCAAGCAGACTTTCTCATGA
AGCCGCTGCACATCGGTCCTTTCTACATGCACAGGCAATTTGCGATGAAC
CTGTAGATGCTTGCCGCAGAGGAGGAGATGCTTCACGAGACGAGCGGAGC
ACCCGACTACGACACCTTGCCGCCAAACAAGCTGGTCTCGGAACTGCCGA
CACCGAAGATGGATGCAGAGGCGAACGTGGGACCCTACCGGAAGCATTTC
AGCGAGGCACGGGTGAAGGAGATGGCCGGGCTCAAAGCAGGGGGACGAAA
GGAGTTCCGCATTGTCCACGTGCCTACCGAGTTGCAGCAAGCAGACTTTC
TCATGAAGCCGCTGCACATCGGTCCTTTCTACATGCACAGGCAATTTGCG
ATGAACCTGTAG
back to top