mRNA_H-canaliculatus_F_contig13576.2887.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13576.2887.1
Unique NamemRNA_H-canaliculatus_F_contig13576.2887.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13576.2887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13576contigH-canaliculatus_F_contig13576:2309..3024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size707
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13576.2887.1prot_H-canaliculatus_F_contig13576.2887.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13576 2309..2923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.760646-CDS-H-canaliculatus_F_contig13576:2308..25611622929100.760646-CDS-H-canaliculatus_F_contig13576:2308..2561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 2309..2561 -
1696845678.82679-CDS-H-canaliculatus_F_contig13576:2308..25611696845678.82679-CDS-H-canaliculatus_F_contig13576:2308..2561Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 2309..2561 -
1622929100.7726362-CDS-H-canaliculatus_F_contig13576:2570..29231622929100.7726362-CDS-H-canaliculatus_F_contig13576:2570..2923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 2571..2923 -
1696845678.8376906-CDS-H-canaliculatus_F_contig13576:2570..29231696845678.8376906-CDS-H-canaliculatus_F_contig13576:2570..2923Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 2571..2923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.788442-UTR-H-canaliculatus_F_contig13576:2923..30241622929100.788442-UTR-H-canaliculatus_F_contig13576:2923..3024Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13576 2924..3024 -
1696845678.849602-UTR-H-canaliculatus_F_contig13576:2923..30241696845678.849602-UTR-H-canaliculatus_F_contig13576:2923..3024Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13576 2924..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13576.2887.1

>prot_H-canaliculatus_F_contig13576.2887.1 ID=prot_H-canaliculatus_F_contig13576.2887.1|Name=mRNA_H-canaliculatus_F_contig13576.2887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MAVSARSGEARAGGLLALKLGRIYIFAPVQQASRLLFRERTRVEKTSKPP
EETSFRRRGAAGGPGRNQTSFVATSAKQSSEVGRSLYLRETKRQRCRASL
HAPNDATKRSQDEAAGQQTTFDVSITTVYNEGRRGKSRRSDIWHTASEPN
GPPTLCCAAADGDNNSNKNEPPRLRRRHQHPTTINSGGTLGVCTPLPPHL
P*
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mRNA from alignment at H-canaliculatus_F_contig13576:2309..3024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13576.2887.1 ID=mRNA_H-canaliculatus_F_contig13576.2887.1|Name=mRNA_H-canaliculatus_F_contig13576.2887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=716bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13576:2309..3024- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGCTGATCGTTCCATCCCTCGCTCGTGAGGGCCGGACAC
GTTATTTCACCCCAACTTACTGGCTTTTGGGGGTTCAATCAATGCACAAC
GATGGCGGTTTCCGCTCGCTCCGGGGAAGCGAGGGCGGGCGGCCTCTTGG
CTCTCAAGTTGGGCAGAATATATATTTTTGCTCCTGTCCAGCAGGCCTCG
AGGCTTCTATTTCGCGAACGCACCCGCGTAGAGAAAACATCAAAGCCGCC
GGAGGAAACGTCATTCCGGCGGCGCGGCGCGGCCGGCGGGCCAGGGCGCA
ACCAAACCTCGTTCGTCGCTACCTCAGCAAAGCAGAGCTCTGAAGTCGGC
CGGTCTCTCTACCTCAGAGAAACGAAGAGGCAAAGATGCCGGGCCAGTCT
TCACGCACCGAACGACGCCACCAAGAGGAGCCAGGATGAGGCAGCGGGGC
AACAGCGTCCAAGAACGACCTTCGATGTATCAATCACAACCGTCTACAAC
GAAGGACGAAGAGGCAAGTCAAGGAGGTCTGACATCTGGCACACCGCAAG
CGAGCCAAACGGCCCGCCAACCCTCTGTTGCGCCGCCGCCGACGGCGACA
ACAACAGCAACAAAAACGAACCACCACGACTACGACGACGACACCAACAC
CCAACAACCATCAACAGCGGCGGCACACTCGGCGTGTGCACCCCGCTGCC
CCCGCACCTTCCTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13576:2309..3024-

>mRNA_H-canaliculatus_F_contig13576.2887.1 ID=mRNA_H-canaliculatus_F_contig13576.2887.1|Name=mRNA_H-canaliculatus_F_contig13576.2887.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13576:2309..3024- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGTTTCCGCTCGCTCCGGGGAAGCGAGGGCGGGCGGCCTCTTGGC
TCTCAAGTTGGGCAGAATATATATTTTTGCTCCTGTCCAGCAGGCCTCGA
GGCTTCTATTTCGCGAACGCACCCGCGTAGAGAAAACATCAAAGCCGCCG
GAGGAAACGTCATTCCGGCGGCGCGGCGCGGCCGGCGGGCCAGGGCGCAA
CCAAACCTCGTTCGTCGCTACCTCAGCAAAGCAGAGCTCTGAAGTCGGCC
GGTCTCTCTACCTCAGAGAAACGAAGAGGCAAAGATGCCGGGCCAGTCTT
CACGCACCGAACGACGCCACCAAGAGGAGCCAGGATGAGGCAGCGGGGCA
ACAATGGCGGTTTCCGCTCGCTCCGGGGAAGCGAGGGCGGGCGGCCTCTT
GGCTCTCAAGTTGGGCAGAATATATATTTTTGCTCCTGTCCAGCAGGCCT
CGAGGCTTCTATTTCGCGAACGCACCCGCGTAGAGAAAACATCAAAGCCG
CCGGAGGAAACGTCATTCCGGCGGCGCGGCGCGGCCGGCGGGCCAGGGCG
CAACCAAACCTCGTTCGTCGCTACCTCAGCAAAGCAGAGCTCTGAAGTCG
GCCGGTCTCTCTACCTCAGAGAAACGAAGAGGCAAAGATGCCGGGCCAGT
CTTCACGCACCGAACGACGCCACCAAGAGGAGCCAGGATGAGGCAGCGGG
GCAACAAACGACCTTCGATGTATCAATCACAACCGTCTACAACGAAGGAC
GAAGAGGCAAGTCAAGGAGGTCTGACATCTGGCACACCGCAAGCGAGCCA
AACGGCCCGCCAACCCTCTGTTGCGCCGCCGCCGACGGCGACAACAACAG
CAACAAAAACGAACCACCACGACTACGACGACGACACCAACACCCAACAA
CCATCAACAGCGGCGGCACACTCGGCGTGTGCACCCCGCTGCCCCCGCAC
CTTCCTTGAAACGACCTTCGATGTATCAATCACAACCGTCTACAACGAAG
GACGAAGAGGCAAGTCAAGGAGGTCTGACATCTGGCACACCGCAAGCGAG
CCAAACGGCCCGCCAACCCTCTGTTGCGCCGCCGCCGACGGCGACAACAA
CAGCAACAAAAACGAACCACCACGACTACGACGACGACACCAACACCCAA
CAACCATCAACAGCGGCGGCACACTCGGCGTGTGCACCCCGCTGCCCCCG
CACCTTCCTTGA
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