mRNA_H-canaliculatus_F_contig13576.2886.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13576.2886.1
Unique NamemRNA_H-canaliculatus_F_contig13576.2886.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13576.2886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13576contigH-canaliculatus_F_contig13576:1208..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.833782-UTR-H-canaliculatus_F_contig13576:1207..13811622929100.833782-UTR-H-canaliculatus_F_contig13576:1207..1381Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13576 1208..1381 +
1696845678.8602552-UTR-H-canaliculatus_F_contig13576:1207..13811696845678.8602552-UTR-H-canaliculatus_F_contig13576:1207..1381Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13576 1208..1381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.8462481-CDS-H-canaliculatus_F_contig13576:1381..16931622929100.8462481-CDS-H-canaliculatus_F_contig13576:1381..1693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 1382..1693 +
1696845678.8693323-CDS-H-canaliculatus_F_contig13576:1381..16931696845678.8693323-CDS-H-canaliculatus_F_contig13576:1381..1693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13576 1382..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13576.2886.1prot_H-canaliculatus_F_contig13576.2886.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13576 1382..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13576.2886.1

>prot_H-canaliculatus_F_contig13576.2886.1 ID=prot_H-canaliculatus_F_contig13576.2886.1|Name=mRNA_H-canaliculatus_F_contig13576.2886.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MTSSDSLIGRRQKDGRVAPSSMSNDGLGSVSVCLLPDLSLRAPVPSGWPF
WAASLHLRNLSARYSSCSSKDSNTRIKSFYFIPRSCVHVALPFSSLLFTS
DSRN
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mRNA from alignment at H-canaliculatus_F_contig13576:1208..1693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13576.2886.1 ID=mRNA_H-canaliculatus_F_contig13576.2886.1|Name=mRNA_H-canaliculatus_F_contig13576.2886.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13576:1208..1693+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCGGTTGGGGGGGGGGTTATCCGCGGGTGCGTGGCCCCAGCGGAGTTT
GGGGTTAGAGGTAGATCAAAGGTAGGTACCTGCTGGAGGAACTTGGTACG
AAACGTGTGCCTTGCCCCGCTTGATAATCACGAGCTCTGCGCATAGGTAG
GGGGCCCTCACGTCGCGTAGAATCATGACTTCCAGCGATAGTTTGATCGG
AAGAAGACAGAAGGACGGTCGAGTCGCACCGAGTTCGATGTCGAATGATG
GCTTGGGTTCGGTTTCCGTCTGTCTTCTCCCCGATCTCTCTTTGCGCGCG
CCCGTGCCCTCAGGTTGGCCTTTTTGGGCCGCTTCGTTGCATCTCCGCAA
CCTTTCGGCTCGCTATTCATCGTGCTCCTCGAAGGATTCAAACACACGCA
TAAAAAGTTTTTATTTCATACCCCGTTCCTGTGTCCATGTTGCCCTTCCC
TTCTCTTCTCTTCTCTTTACCTCGGACTCTCGAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13576:1208..1693+

>mRNA_H-canaliculatus_F_contig13576.2886.1 ID=mRNA_H-canaliculatus_F_contig13576.2886.1|Name=mRNA_H-canaliculatus_F_contig13576.2886.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13576:1208..1693+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTCCAGCGATAGTTTGATCGGAAGAAGACAGAAGGACGGTCGAGT
CGCACCGAGTTCGATGTCGAATGATGGCTTGGGTTCGGTTTCCGTCTGTC
TTCTCCCCGATCTCTCTTTGCGCGCGCCCGTGCCCTCAGGTTGGCCTTTT
TGGGCCGCTTCGTTGCATCTCCGCAACCTTTCGGCTCGCTATTCATCGTG
CTCCTCGAAGGATTCAAACACACGCATAAAAAGTTTTTATTTCATACCCC
GTTCCTGTGTCCATGTTGCCCTTCCCTTCTCTTCTCTTCTCTTTACCTCG
GACTCTCGAAACATGACTTCCAGCGATAGTTTGATCGGAAGAAGACAGAA
GGACGGTCGAGTCGCACCGAGTTCGATGTCGAATGATGGCTTGGGTTCGG
TTTCCGTCTGTCTTCTCCCCGATCTCTCTTTGCGCGCGCCCGTGCCCTCA
GGTTGGCCTTTTTGGGCCGCTTCGTTGCATCTCCGCAACCTTTCGGCTCG
CTATTCATCGTGCTCCTCGAAGGATTCAAACACACGCATAAAAAGTTTTT
ATTTCATACCCCGTTCCTGTGTCCATGTTGCCCTTCCCTTCTCTTCTCTT
CTCTTTACCTCGGACTCTCGAAAC
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