mRNA_H-canaliculatus_F_contig1357.2882.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1357.2882.1
Unique NamemRNA_H-canaliculatus_F_contig1357.2882.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1357.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1357contigH-canaliculatus_F_contig1357:4892..5498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.070207-CDS-H-canaliculatus_F_contig1357:4891..49931622929100.070207-CDS-H-canaliculatus_F_contig1357:4891..4993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1357 4892..4993 +
1696845678.6375268-CDS-H-canaliculatus_F_contig1357:4891..49931696845678.6375268-CDS-H-canaliculatus_F_contig1357:4891..4993Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1357 4892..4993 +
1622929100.0897377-CDS-H-canaliculatus_F_contig1357:5326..54971622929100.0897377-CDS-H-canaliculatus_F_contig1357:5326..5497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1357 5327..5497 +
1696845678.6481643-CDS-H-canaliculatus_F_contig1357:5326..54971696845678.6481643-CDS-H-canaliculatus_F_contig1357:5326..5497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1357 5327..5497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1357.2882.1prot_H-canaliculatus_F_contig1357.2882.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1357 4892..5497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1357.2882.1

>prot_H-canaliculatus_F_contig1357.2882.1 ID=prot_H-canaliculatus_F_contig1357.2882.1|Name=mRNA_H-canaliculatus_F_contig1357.2882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
GVPEQGRRDGRGRDGEGSRRETAGRTSDADARAKAMASQDMERPAARDAG
SGSLAVRRGRDSRDAHGNVPRTNSNSRMGAAPGTLGDQQQE
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mRNA from alignment at H-canaliculatus_F_contig1357:4892..5498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1357.2882.1 ID=mRNA_H-canaliculatus_F_contig1357.2882.1|Name=mRNA_H-canaliculatus_F_contig1357.2882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=607bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1357:4892..5498+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTTCCCGAGCAGGGCAGGAGGGATGGGCGGGGACGGGATGGCGAGGG
CAGCAGGCGGGAGACGGCGGGAAGGACGAGTGATGCTGACGCTCGTGCGA
AGGTGTGTGGTGTGTGTGGTAGCTGTGGTAAGTGGTCCAGCGTGCGCGTG
GGCGAGAGGGGTAGGGTTTGTGCTTGTAGAGCGAGACCGGCCAGATTGGG
CAAGAAGACGAGGAAGACGAGGAAGACGGGCCTTGTTGCGGTGTTCATCG
GGAGCATGCCTTCCGTTTCGCCGCACTCAGCGGTGCGAGGCTGATGCTGT
AAGGGGCGAAATGCTGCCCCGAGTGCCTCTGCGGCTGGGTCCGTCCTTTT
CTTCTTTCCGTCTGACGTCCGCAACCTCTCCGCGGGTGGCGTTATCGCAA
CCCCTCCTGTGTTGCCTCAACCCGTTTGCTTGCAGGCCATGGCCTCCCAG
GACATGGAACGCCCAGCGGCGCGTGACGCAGGGAGCGGCAGCCTCGCCGT
GCGTCGAGGCCGCGACTCCCGCGATGCCCACGGCAACGTCCCACGCACCA
ACAGCAACAGCCGCATGGGCGCCGCCCCCGGGACGCTCGGCGACCAGCAG
CAGGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1357:4892..5498+

>mRNA_H-canaliculatus_F_contig1357.2882.1 ID=mRNA_H-canaliculatus_F_contig1357.2882.1|Name=mRNA_H-canaliculatus_F_contig1357.2882.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1357:4892..5498+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTTCCCGAGCAGGGCAGGAGGGATGGGCGGGGACGGGATGGCGAGGG
CAGCAGGCGGGAGACGGCGGGAAGGACGAGTGATGCTGACGCTCGTGCGA
AGGGGGTTCCCGAGCAGGGCAGGAGGGATGGGCGGGGACGGGATGGCGAG
GGCAGCAGGCGGGAGACGGCGGGAAGGACGAGTGATGCTGACGCTCGTGC
GAAGGCCATGGCCTCCCAGGACATGGAACGCCCAGCGGCGCGTGACGCAG
GGAGCGGCAGCCTCGCCGTGCGTCGAGGCCGCGACTCCCGCGATGCCCAC
GGCAACGTCCCACGCACCAACAGCAACAGCCGCATGGGCGCCGCCCCCGG
GACGCTCGGCGACCAGCAGCAGGAGGCCATGGCCTCCCAGGACATGGAAC
GCCCAGCGGCGCGTGACGCAGGGAGCGGCAGCCTCGCCGTGCGTCGAGGC
CGCGACTCCCGCGATGCCCACGGCAACGTCCCACGCACCAACAGCAACAG
CCGCATGGGCGCCGCCCCCGGGACGCTCGGCGACCAGCAGCAGGAG
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