mRNA_H-canaliculatus_F_contig13569.2880.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13569.2880.1
Unique NamemRNA_H-canaliculatus_F_contig13569.2880.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: D8LI47_ECTSI (Sulfhydryl oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI47_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.190e-34
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:   97 SASGNDGCPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPPE 312
            S+S NDGCPLDKGELGAATWGLIHTTAAHYPEKPS+ETQ  ARA ++ LA LYPC+YCR+DF EE+RK PP+
Sbjct:   70 SSSRNDGCPLDKGELGAATWGLIHTTAAHYPEKPSKETQDQARALVTGLAGLYPCTYCRKDFREEVRKLPPD 141
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: M4B9B5_HYAAE (Sulfhydryl oxidase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9B5_HYAAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.310e-22
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPP 309
            CPLD+ ELGAATWGL+H+   +YPEKPS E Q+ A++F+ +LA +YPC +C EDF +E+ K PP
Sbjct:   40 CPLDRQELGAATWGLLHSMGIYYPEKPSPEYQAKAKSFIETLALMYPCVHCAEDFQKEVAKSPP 103
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: W4G0I5_9STRA (Sulfhydryl oxidase n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0I5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.830e-21
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   82 AAANVSASGNDGCPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPP 309
            AAAN SA+  + CPLD+ ELG ATWGL+HT AA++PEKPS+  ++HA +F+ +LA LYPC +C  DF E I   PP
Sbjct:   35 AAANTSAAPVE-CPLDREELGRATWGLLHTMAAYFPEKPSDAMKAHATSFVHALADLYPCKHCAVDFQESIVAIPP 109
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: A0A485LDU3_9STRA (Sulfhydryl oxidase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDU3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.560e-20
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPPE 312
            CPLD+ ELG ATWGL+HTTAA+YP+KP++  ++ A  F+ S A LYPC +C  DF E I+  PP+
Sbjct:   44 CPLDREELGRATWGLLHTTAAYYPDKPTQAQKNQATTFVESFAQLYPCKHCAGDFQENIKDTPPK 108
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: A0A835ZFE3_9STRA (Sulfhydryl oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.220e-20
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPPE 312
            CPLD+ ELG ATW L+HTTAA YPE+P+ + Q+ A+  +SSL+ LYPCSYC  DF  E+   PP+
Sbjct:   62 CPLDRRELGNATWALLHTTAAKYPEEPNADQQTAAKQLISSLSVLYPCSYCASDFRHEVANTPPK 126
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: T0SBL1_SAPDV (Sulfhydryl oxidase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBL1_SAPDV)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-20
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  112 DGCPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPPE 312
            D CPLD+ E+G ATWG++HT AA+YPE PS+  + HA  F+ +L  LYPC YC  DF+E I   PP+
Sbjct:   39 DDCPLDREEVGRATWGMLHTMAAYYPETPSDAMKQHATNFIQALGQLYPCKYCATDFAENIVASPPK 105
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: A0A1V9YIW7_9STRA (Sulfhydryl oxidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YIW7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.030e-20
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPPE 312
            CPLD+ ELG ATW  +HT AA+YPEKPS   + HAR+F+++L+ LYPC YC  DF + I   PP+
Sbjct:   36 CPLDREELGRATWSTLHTMAAYYPEKPSNAMKEHARSFITALSQLYPCKYCAVDFQKNIELCPPK 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: UPI00096B3FC9 (LOW QUALITY PROTEIN: FAD-linked sulfhydryl oxidase ALR n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B3FC9)

HSP 1 Score: 88.6 bits (218), Expect = 4.130e-20
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPP 309
            CPLDK ELG+ TWGL+HT AA YPEKPSE+ Q   R F    +  YPC +C EDF ++++  PP
Sbjct:   49 CPLDKDELGSKTWGLLHTMAARYPEKPSEKQQDDMRTFFKVFSQFYPCDHCAEDFRKDLKSDPP 112
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: G4YVZ9_PHYSP (Sulfhydryl oxidase n=8 Tax=Phytophthora TaxID=4783 RepID=G4YVZ9_PHYSP)

HSP 1 Score: 88.6 bits (218), Expect = 5.030e-20
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPP 309
            CPLD+ ELG ATWGL+H+   +YP+KPS E Q+ A+ F+ +LA +YPC +C +DF +EI K PP
Sbjct:   43 CPLDRQELGNATWGLLHSMGIYYPDKPSPEYQAKAKTFIEALALMYPCVHCADDFQKEIAKSPP 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Match: A0A225VL11_9STRA (Sulfhydryl oxidase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VL11_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.150e-19
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  118 CPLDKGELGAATWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRKQPP 309
            CPL++  LG+ATW L+HT    YP+KPS E Q+  R FM +LA LYPC +C EDF +E+ K PP
Sbjct:   16 CPLNRETLGSATWSLLHTMGLAYPDKPSPEYQAKTRVFMETLALLYPCGHCAEDFQKEVAKSPP 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13569.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI47_ECTSI1.190e-3477.78Sulfhydryl oxidase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
M4B9B5_HYAAE7.310e-2257.81Sulfhydryl oxidase n=1 Tax=Hyaloperonospora arabid... [more]
W4G0I5_9STRA7.830e-2156.58Sulfhydryl oxidase n=6 Tax=Aphanomyces astaci TaxI... [more]
A0A485LDU3_9STRA1.560e-2055.38Sulfhydryl oxidase n=1 Tax=Aphanomyces stellatus T... [more]
A0A835ZFE3_9STRA2.220e-2056.92Sulfhydryl oxidase n=1 Tax=Tribonema minus TaxID=3... [more]
T0SBL1_SAPDV2.280e-2053.73Sulfhydryl oxidase n=1 Tax=Saprolegnia diclina (st... [more]
A0A1V9YIW7_9STRA4.030e-2055.38Sulfhydryl oxidase n=1 Tax=Thraustotheca clavata T... [more]
UPI00096B3FC94.130e-2054.69LOW QUALITY PROTEIN: FAD-linked sulfhydryl oxidase... [more]
G4YVZ9_PHYSP5.030e-2054.69Sulfhydryl oxidase n=8 Tax=Phytophthora TaxID=4783... [more]
A0A225VL11_9STRA1.150e-1954.69Sulfhydryl oxidase n=1 Tax=Phytophthora megakarya ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13569contigH-canaliculatus_F_contig13569:356..1439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.7e-27
Seed eggNOG ortholog2880.D8LI47
Preferred nameGFER
KEGG koko:K17783
GOsGO:0000166,GO:0001889,GO:0001910,GO:0001911,GO:0002237,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002715,GO:0002716,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009719,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010556,GO:0010557,GO:0010604,GO:0010941,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0016670,GO:0016971,GO:0016972,GO:0019219,GO:0019222,GO:0031099,GO:0031100,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031342,GO:0031347,GO:0031348,GO:0032496,GO:0032501,GO:0032502,GO:0033993,GO:0034097,GO:0034612,GO:0036094,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042269,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045824,GO:0045935,GO:0045953,GO:0046677,GO:0048037,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048732,GO:0048856,GO:0050660,GO:0050662,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071236,GO:0071310,GO:0071345,GO:0071356,GO:0071396,GO:0071417,GO:0071495,GO:0072716,GO:0072717,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097237,GO:0097421,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903203,GO:1903204,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.sulfhydryl oxidase
EggNOG OGsCOG5054@1,KOG3355@2759
EC1.8.3.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial intermembrane space Erv1 homolog
Ec32 orthologEc-26_005200.1
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929100.0035534-CDS-H-canaliculatus_F_contig13569:355..5081622929100.0035534-CDS-H-canaliculatus_F_contig13569:355..508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13569 356..508 -
1696845678.6086528-CDS-H-canaliculatus_F_contig13569:355..5081696845678.6086528-CDS-H-canaliculatus_F_contig13569:355..508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13569 356..508 -
1622929100.016307-CDS-H-canaliculatus_F_contig13569:1277..14391622929100.016307-CDS-H-canaliculatus_F_contig13569:1277..1439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13569 1278..1439 -
1696845678.6222827-CDS-H-canaliculatus_F_contig13569:1277..14391696845678.6222827-CDS-H-canaliculatus_F_contig13569:1277..1439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13569 1278..1439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13569.2880.1prot_H-canaliculatus_F_contig13569.2880.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13569 356..1439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13569.2880.1

>prot_H-canaliculatus_F_contig13569.2880.1 ID=prot_H-canaliculatus_F_contig13569.2880.1|Name=mRNA_H-canaliculatus_F_contig13569.2880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
KGSSSTENPTSSGDATAKTDESTAVAAAAANVSASGNDGCPLDKGELGAA
TWGLIHTTAAHYPEKPSEETQSHARAFMSSLATLYPCSYCREDFSEEIRK
QPPE*
back to top

mRNA from alignment at H-canaliculatus_F_contig13569:356..1439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13569.2880.1 ID=mRNA_H-canaliculatus_F_contig13569.2880.1|Name=mRNA_H-canaliculatus_F_contig13569.2880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1084bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13569:356..1439- (Hapterophycus canaliculatus Oshoro5f female)
AAGGGCTCGTCGTCGACCGAAAATCCGACATCGTCCGGCGATGCTACGGC
GAAAACGGACGAGTCTACGGCCGTTGCTGCTGCCGCCGCCAACGTGTCCG
CTTCGGGAAACGACGGGTGTCCGCTTGACAAGGGCGAGCTGGGAGCTGCC
ACTTGGGGACTGGTGCGTTCGAGCTAAGGGACATATTTGACCGATACGTT
CTTATGGGCAGTGAGCTCACCACGGCCTGTATGCGACATGCGCGCGCCCG
CGTGCTGCCCGGTTTAGAGGTCGTCGAGGTGTGTGAAATCCACCCGGCGG
GTAGGTTTCATTATGACCTCCCGTGGGGAGGCGTCATCGTTCCTACTGCC
GCGCTACCGCTACCATTGTGAAATAAGCTAGTTGGAGTGCGGGCACCTTC
GAAGGAGACAGGGTGAAATTTCTGTTGGGTCGTTGACGGAGGCGCAACAA
ATCCTGTGCCAGCGGTTCCTCCTTCGGGTAAAAAGGAGGCGGAGTAATCG
CGCACCGACGTCGAATCGCAGCCTCTAGCGCCGCACCTCTTTCGTGCCGT
TGCTCCTCTGCATGTCTGTTGGAGAGAGGAGTAGCTCCCACAAACAGCGG
TAGCTACTGCAGAGACGCGGGAGGGAGTTGGCACTCTGGGAAGCTGGATT
TGATGCCGGGATCCCTCCATCGCGGTGCTTACCTGTACACGTTCCAGAAC
TCGCAGATTGGGCCTCCTGATCGGATACGGTCCACGCCCGACATGCCCAC
AGAGCAGCGGACACGCCTTCGAAGTCGAAAACTTTCAGACCTTCCATGCA
AAGGAAGGCTTTATTCATGGCTCCCGCCCGACACCCGCCTGACACGCGGC
GTGAAGGTCTTAAAGCTTGCGCTCCCGCCCCACGCACCCCTCTCACATGT
ACCTTTTTGCTCTGGGCCGGATCGCCGCCAGATCCACACAACGGCGGCGC
ACTATCCTGAAAAGCCTTCGGAAGAGACCCAAAGCCACGCCAGGGCTTTC
ATGAGCAGCCTCGCCACCTTGTATCCTTGCAGCTACTGCCGGGAGGACTT
CTCGGAAGAAATTCGCAAACAGCCGCCAGAGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13569:356..1439-

>mRNA_H-canaliculatus_F_contig13569.2880.1 ID=mRNA_H-canaliculatus_F_contig13569.2880.1|Name=mRNA_H-canaliculatus_F_contig13569.2880.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13569:356..1439- (Hapterophycus canaliculatus Oshoro5f female)
AAGGGCTCGTCGTCGACCGAAAATCCGACATCGTCCGGCGATGCTACGGC
GAAAACGGACGAGTCTACGGCCGTTGCTGCTGCCGCCGCCAACGTGTCCG
CTTCGGGAAACGACGGGTGTCCGCTTGACAAGGGCGAGCTGGGAGCTGCC
ACTTGGGGACTGAAGGGCTCGTCGTCGACCGAAAATCCGACATCGTCCGG
CGATGCTACGGCGAAAACGGACGAGTCTACGGCCGTTGCTGCTGCCGCCG
CCAACGTGTCCGCTTCGGGAAACGACGGGTGTCCGCTTGACAAGGGCGAG
CTGGGAGCTGCCACTTGGGGACTGATCCACACAACGGCGGCGCACTATCC
TGAAAAGCCTTCGGAAGAGACCCAAAGCCACGCCAGGGCTTTCATGAGCA
GCCTCGCCACCTTGTATCCTTGCAGCTACTGCCGGGAGGACTTCTCGGAA
GAAATTCGCAAACAGCCGCCAGAGTGAATCCACACAACGGCGGCGCACTA
TCCTGAAAAGCCTTCGGAAGAGACCCAAAGCCACGCCAGGGCTTTCATGA
GCAGCCTCGCCACCTTGTATCCTTGCAGCTACTGCCGGGAGGACTTCTCG
GAAGAAATTCGCAAACAGCCGCCAGAGTGA
back to top