mRNA_H-canaliculatus_F_contig13546.2870.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13546.2870.1
Unique NamemRNA_H-canaliculatus_F_contig13546.2870.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13546.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13546contigH-canaliculatus_F_contig13546:1661..2571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13546.2870.1prot_H-canaliculatus_F_contig13546.2870.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13546 1664..2571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.3163126-UTR-H-canaliculatus_F_contig13546:1660..16631622929098.3163126-UTR-H-canaliculatus_F_contig13546:1660..1663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13546 1661..1663 +
1696845677.938544-UTR-H-canaliculatus_F_contig13546:1660..16631696845677.938544-UTR-H-canaliculatus_F_contig13546:1660..1663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13546 1661..1663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929098.3314784-CDS-H-canaliculatus_F_contig13546:1663..17831622929098.3314784-CDS-H-canaliculatus_F_contig13546:1663..1783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1664..1783 +
1696845677.9467819-CDS-H-canaliculatus_F_contig13546:1663..17831696845677.9467819-CDS-H-canaliculatus_F_contig13546:1663..1783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 1664..1783 +
1622929098.3553371-CDS-H-canaliculatus_F_contig13546:2421..25711622929098.3553371-CDS-H-canaliculatus_F_contig13546:2421..2571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 2422..2571 +
1696845677.955368-CDS-H-canaliculatus_F_contig13546:2421..25711696845677.955368-CDS-H-canaliculatus_F_contig13546:2421..2571Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13546 2422..2571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13546.2870.1

>prot_H-canaliculatus_F_contig13546.2870.1 ID=prot_H-canaliculatus_F_contig13546.2870.1|Name=mRNA_H-canaliculatus_F_contig13546.2870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MAFDVRCFFWAHWSGSASLSLATTSSARVPAGGARAASPEGGKGAVSPPT
TAVAAITAAGVLPLPGAGLGGSGDSLGGGRNVEETNFSPA
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mRNA from alignment at H-canaliculatus_F_contig13546:1661..2571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13546.2870.1 ID=mRNA_H-canaliculatus_F_contig13546.2870.1|Name=mRNA_H-canaliculatus_F_contig13546.2870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=911bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13546:1661..2571+ (Hapterophycus canaliculatus Oshoro5f female)
GCGATGGCGTTCGACGTGCGCTGTTTTTTCTGGGCGCACTGGTCGGGCTC
GGCGTCCCTTTCCCTGGCGACCACGTCATCCGCCCGCGTGCCCGCCGGTG
GTGCCCGTGCGGCATCTCCCGAGGTGAGCCTTAAGCATGGGGTCCCGCAA
GACAGCAGGATGATCGTAGTGGTCCAATCTGTGCAACGCAGCAGGCCCCC
CTTCACCCTCTTCGCCCACACTGGCTGCGGCGGCATCAGCGCCGTCTCCC
GCGAAGGTTGAGCTGGCTGCCACCGCTGCTGCGGCGGCTGTTGGTCCTGC
CGCAGCATCGATGCCGACCCTGTTCGATGCGAGCAAGATCTCGCCATGCG
ATGGCGGCGATCTGCCCATCACCTCCGTTGGTCGTGTTGTAGCCGGAGAT
GATGGCGATGGGCAGGTGGCGATGTGGTTGTTGTTGTGGCCGTTTTTGCT
GCTACGGCAATTGTTGTTGGCGGTGGTACGGTGCCCTCGTTTGTGTTCCA
GCGGTAGACGGTGCAGTTGGCAGCAGCAGGAACGTGTGGAGAGTGCTGCG
GTAAACCCATGAGGGCTGCCTTTCACTCGCCAGCACGTTTGATACGTCAC
TGCCCCTCGAAGCAACGGTGTGGCCATGCCTGCCTCAGAGAAACGCGACC
GTGAAAGATGCCAGGTCAAACGCTCACATCTTCAAGTGAGGTGATAAACG
CAGCATCAGACCGAATGCTGATTGCTTCGAGCGTCCTTTTTAATTTGCTT
GCTTGCTACAGGGCGGGAAAGGTGCGGTTTCTCCTCCGACTACTGCCGTG
GCGGCGATCACGGCAGCCGGCGTGCTGCCGCTCCCCGGTGCCGGTCTTGG
TGGAAGCGGTGACAGCTTGGGCGGCGGTAGAAATGTAGAAGAGACCAACT
TTTCTCCGGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13546:1661..2571+

>mRNA_H-canaliculatus_F_contig13546.2870.1 ID=mRNA_H-canaliculatus_F_contig13546.2870.1|Name=mRNA_H-canaliculatus_F_contig13546.2870.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13546:1661..2571+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTTCGACGTGCGCTGTTTTTTCTGGGCGCACTGGTCGGGCTCGGC
GTCCCTTTCCCTGGCGACCACGTCATCCGCCCGCGTGCCCGCCGGTGGTG
CCCGTGCGGCATCTCCCGAGATGGCGTTCGACGTGCGCTGTTTTTTCTGG
GCGCACTGGTCGGGCTCGGCGTCCCTTTCCCTGGCGACCACGTCATCCGC
CCGCGTGCCCGCCGGTGGTGCCCGTGCGGCATCTCCCGAGGGCGGGAAAG
GTGCGGTTTCTCCTCCGACTACTGCCGTGGCGGCGATCACGGCAGCCGGC
GTGCTGCCGCTCCCCGGTGCCGGTCTTGGTGGAAGCGGTGACAGCTTGGG
CGGCGGTAGAAATGTAGAAGAGACCAACTTTTCTCCGGCAGGCGGGAAAG
GTGCGGTTTCTCCTCCGACTACTGCCGTGGCGGCGATCACGGCAGCCGGC
GTGCTGCCGCTCCCCGGTGCCGGTCTTGGTGGAAGCGGTGACAGCTTGGG
CGGCGGTAGAAATGTAGAAGAGACCAACTTTTCTCCGGCA
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