mRNA_H-canaliculatus_F_contig1354.2867.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1354.2867.1 vs. uniprot
Match: D8LLE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE9_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.140e-51 Identity = 185/481 (38.46%), Postives = 224/481 (46.57%), Query Frame = 1
Query: 1531 DSCMVGCNMEEVTGSGYWDTFGGNHKSCDRGGAEALAEQSELTESAVASAVLLRWAVEGFVRDGIRDGCGDSD----------DSLAT--GSLRAEATAVRVAPKVQEQVVNRTKSSPVGLTQPAGESKDSRLCSVS-DIDTSGANSDQYGRSSLGGSA---GNARAAASSTTLEAPSFRSSEGPRAKNLECRDLRASAGGGRERGARL--------EGEEDGTQLSERDRRHLAGDIAAGSSXXXXXXXXXXRGDEGC-GGRKSQVVSISLALAGEPAENAKNTKSRWLEPAPQDVALHALVCLLRATEVDLCGDGDKDNPEPGSHQLH----VDTAGRGREVVKGKGVLLLALQACNMFQDRGEVVKACCMLMRVGVSCSLQDGGPKRLAGGSFTPGSLLLIENDVENIVTRAAKAHIEDSSVSTEASALLHCLGTCTRTIPTTRATIPVLLP-PLXXXXXXASVPGLASGCLAIDAVT 2883
+S G ++ G+GYWD GGN G LA EL ESAVAS VLLRWA+E V + G D D D L G A P +Q + V+ T V L + + +DS S S ++T A+ G G GN AA+ +L S + E R K R L S GGGR +GEE Q E DR A I A SS R EG R + RWL PA +VALH LVCLLRA EVDLCG G+H+L VDT G GR VV +GVLLL L+AC FQD G+VVK CCMLMRVGV C+L G +R GG P LLI+NDVE +VTRAAKAH+++ SV+ EASALLH LG + I + AT L P P S G A+ + +DAVT
Sbjct: 9 ESKPAGYEIDLADGNGYWDLLGGNRGRGHGGDDGVLA--GELAESAVASVVLLRWAMECVVANDGEGGAEDGDGVVPVTTAPRDGLTADDGDPAKAPVAEDRTPGMQGEAVSATAKGQVRLAKSTRKPRDSDRFSFSGSLETKLAS--HQGEGDCRGPRNVIGNKSFAATCPSLSESSC-NRERLRDKKPLPRGLPLS-GGGRXXXXXXXXXXXXXWKGEEQ--QPPEGDRGRPADGIVATSSSPGDEPKKDARRREGWRDARXXXXXXXXXXXXXXXXXXMRTVPKRWLAPAAHEVALHTLVCLLRAAEVDLCGHN-------GTHRLQTELDVDTVGGGRAVVMEEGVLLLILKACAKFQDHGDVVKICCMLMRVGVMCALHGEGFERPVGGPIAPDMSLLIDNDVEGVVTRAAKAHVDNLSVAAEASALLHSLGMDSIRIDASGATCSALPPAPPTPPPAGKSALGPAAVVVTVDAVT 474
BLAST of mRNA_H-canaliculatus_F_contig1354.2867.1 vs. uniprot
Match: A0A6H5KV03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV03_9PHAE) HSP 1 Score: 176 bits (445), Expect = 6.200e-43 Identity = 187/558 (33.51%), Postives = 232/558 (41.58%), Query Frame = 1
Query: 1531 DSCMVGCNMEEVTGSGYWDTFGGNHKSCDRG-GAEALAEQSELTESAVASAVLLRWAVEGFVRD----GIRDGCG--------------DSDDSLATGSLRAEATAVRVAPKVQEQVVNRTKSSPVGLTQPAGESKDSRLCSVS-DIDTSGANSDQYGRSSLGG---SAGNARAAASSTTLEAPSFRSSEGPRAKNLECRDLRASAGGGRERGARLEGEEDGTQLS-------ERDRRHLAGDIAAGSSXXXXXXXXXXRGDEGC-GGRKSQVVSISLALAGEPAENAKNTKSR--------------------------------------------------------------------------WLEPAPQDVALHALVCLLRATEVDLCGDGDKDNPEPGSHQLHVDTAGRGREVVKGKGVLLLALQACNMFQDRGEVVKACCMLMRVGVSCSLQDGGPKRLAGGSFTPGSLLLIENDVENIVTRAAKAHIEDSSVSTEASALLHCLGTCTRTIPTTRATIPVLLPPLXXXXXXASVPGL--ASGCLAIDAVT 2883
+S VG + G+GYWD G N C RG G + EL ESAVAS VLLRWA+E V + G DG G DD A + + T P +Q + V+ T + V L A + + S S S ++ AN +G G + GN AAS +L S + E R K R+L S GGR E DR AG I S R EG GR +V S A EP E+ + R WL PA +VALHALVCLLRA EVDLCG + + +L +DT G GR VV +GVLLL L+AC FQD G+VVK CCMLMRVGV C+L G +R GG PG LL++N VE +VTRAAKAH+E+ SV+ EASALLH LG + I + AT L PP A L A+ + +DAVT
Sbjct: 9 ESKSVGYEKDLADGNGYWDLLGEN---CCRGHGLDDGVLAGELAESAVASVVLLRWAMECIVANDGEGGAEDGDGVVPGTTAPRNGLTTADDDEPAKAPVAEDGT-----PSMQGKAVSATATGQVRLAHSARKPRGSDRFSFSGSLERKCAN--HHGEGDCRGPRKAIGNKSFAASCPSLSESSC-NRERLRDKKPFPRELPLS--GGRXXXXXXXXXXXXXXXXXXXXXXPEGDRGRPAGGIVVTSPSPGDEAKKDERHREGWRDGRTPRVAGKSTASGDEPVEDMRTFPKRYAAAPKMYCFWLVGAPSLLSAPWNDLHNPGSPQRRSTSRNVIFEERRMGLFKSVSSGLNPSCLPASLLSSADRTWLAPAAHEVALHALVCLLRAAEVDLCGHSSTNRLQT---ELDMDTVGGGRAVVMEEGVLLLVLKACARFQDHGDVVKICCMLMRVGVMCALHGAGFERPVGGPIAPGMALLVDNGVEGVVTRAAKAHVENLSVTMEASALLHSLGMNSIRIDASGATCSAL-PPAPPTPQPAGKSDLEPAAVVVTVDAVT 549 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1354.2867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1354.2867.1 >prot_H-canaliculatus_F_contig1354.2867.1 ID=prot_H-canaliculatus_F_contig1354.2867.1|Name=mRNA_H-canaliculatus_F_contig1354.2867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=961bp MGRKGKKKVRNKRRAETSLATVKGVVTKAMESKKVMRLWQDAILREELMEback to top mRNA from alignment at H-canaliculatus_F_contig1354:9706..16254- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1354.2867.1 ID=mRNA_H-canaliculatus_F_contig1354.2867.1|Name=mRNA_H-canaliculatus_F_contig1354.2867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6549bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1354:9706..16254- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1354:9706..16254- >mRNA_H-canaliculatus_F_contig1354.2867.1 ID=mRNA_H-canaliculatus_F_contig1354.2867.1|Name=mRNA_H-canaliculatus_F_contig1354.2867.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5766bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1354:9706..16254- (Hapterophycus canaliculatus Oshoro5f female)back to top |