mRNA_H-canaliculatus_F_contig1353.2862.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1353.2862.1
Unique NamemRNA_H-canaliculatus_F_contig1353.2862.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1353.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1353contigH-canaliculatus_F_contig1353:12660..13256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size174
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929097.0421934-CDS-H-canaliculatus_F_contig1353:12659..127451622929097.0421934-CDS-H-canaliculatus_F_contig1353:12659..12745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 12660..12745 +
1696845677.4385374-CDS-H-canaliculatus_F_contig1353:12659..127451696845677.4385374-CDS-H-canaliculatus_F_contig1353:12659..12745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 12660..12745 +
1622929097.0551517-CDS-H-canaliculatus_F_contig1353:13170..132551622929097.0551517-CDS-H-canaliculatus_F_contig1353:13170..13255Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 13171..13255 +
1696845677.451027-CDS-H-canaliculatus_F_contig1353:13170..132551696845677.451027-CDS-H-canaliculatus_F_contig1353:13170..13255Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1353 13171..13255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1353.2862.1prot_H-canaliculatus_F_contig1353.2862.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1353 12660..13255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1353.2862.1

>prot_H-canaliculatus_F_contig1353.2862.1 ID=prot_H-canaliculatus_F_contig1353.2862.1|Name=mRNA_H-canaliculatus_F_contig1353.2862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
DERDEDTGSATARQWANALGASFLISLCSFVGIATVVSNRITRKINLSLA
LLFASGA
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mRNA from alignment at H-canaliculatus_F_contig1353:12660..13256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1353.2862.1 ID=mRNA_H-canaliculatus_F_contig1353.2862.1|Name=mRNA_H-canaliculatus_F_contig1353.2862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=597bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1353:12660..13256+ (Hapterophycus canaliculatus Oshoro5f female)
GACGAGAGAGATGAAGACACTGGTAGCGCGACTGCCCGGCAGTGGGCGAA
CGCACTCGGCGCATCGTTCCTTATTTCCTTGTGCAGGTGTGTGTGTAACA
AAGCGCCCGCGACCGAGGGGATTCCGGGGGCAGCGAAGCGGCGACAGTGG
GGACTACGAAGCACACGCGTAGCCTAGGCAAGAAGGGAACTGTACACGTC
GGCTGCGATAAAATATGCGCGGGCCTTCATAGTTGACATGGTGCTAGTCG
TCCGCTGCCTTTAACCGTTAATGCTGTGCGCGGACAGCGGGAAGTTGAAC
GTTGCCCCATCCCTGGATATAAACCCAGCACGTAGATCATAACCCGCTTA
GTAATCCTTGCCACGGAATTTAAAGGCGCGCCGTACAATCTGCACCAACA
AGCCCGCACCGTTACCTCTGTCGCGCGCTGCCGCGCTCACTCCACGTTCC
TTCTTGCCACGCCTGCCTTCTACGGTTCACGTCGATGACCGCCTTCTTTT
CCACCGCTCAGTTTTGTCGGGATCGCAACCGTAGTGAGCAACCGGATCAC
GAGAAAAATAAACCTCTCCCTGGCGCTCCTGTTCGCATCGGGCGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1353:12660..13256+

>mRNA_H-canaliculatus_F_contig1353.2862.1 ID=mRNA_H-canaliculatus_F_contig1353.2862.1|Name=mRNA_H-canaliculatus_F_contig1353.2862.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1353:12660..13256+ (Hapterophycus canaliculatus Oshoro5f female)
GACGAGAGAGATGAAGACACTGGTAGCGCGACTGCCCGGCAGTGGGCGAA
CGCACTCGGCGCATCGTTCCTTATTTCCTTGTGCAGGACGAGAGAGATGA
AGACACTGGTAGCGCGACTGCCCGGCAGTGGGCGAACGCACTCGGCGCAT
CGTTCCTTATTTCCTTGTGCAGTTTTGTCGGGATCGCAACCGTAGTGAGC
AACCGGATCACGAGAAAAATAAACCTCTCCCTGGCGCTCCTGTTCGCATC
GGGCGCCTTTTGTCGGGATCGCAACCGTAGTGAGCAACCGGATCACGAGA
AAAATAAACCTCTCCCTGGCGCTCCTGTTCGCATCGGGCGCC
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