mRNA_H-canaliculatus_F_contig13515.2851.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13515.2851.1
Unique NamemRNA_H-canaliculatus_F_contig13515.2851.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13515.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13515contigH-canaliculatus_F_contig13515:1762..2148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size389
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.821339-CDS-H-canaliculatus_F_contig13515:1761..20941622929095.821339-CDS-H-canaliculatus_F_contig13515:1761..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13515 1762..2094 +
1696845677.0267015-CDS-H-canaliculatus_F_contig13515:1761..20941696845677.0267015-CDS-H-canaliculatus_F_contig13515:1761..2094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13515 1762..2094 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.8457084-UTR-H-canaliculatus_F_contig13515:2094..21481622929095.8457084-UTR-H-canaliculatus_F_contig13515:2094..2148Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13515 2095..2148 +
1696845677.0356107-UTR-H-canaliculatus_F_contig13515:2094..21481696845677.0356107-UTR-H-canaliculatus_F_contig13515:2094..2148Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13515 2095..2148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13515.2851.1prot_H-canaliculatus_F_contig13515.2851.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13515 1762..2094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13515.2851.1

>prot_H-canaliculatus_F_contig13515.2851.1 ID=prot_H-canaliculatus_F_contig13515.2851.1|Name=mRNA_H-canaliculatus_F_contig13515.2851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
WPRFVPKCFSLSNAKSSPRYITTFASKTWPSKCFGANVGEDKLFTPTFCD
HSNRSEDHHFEHGAAGCCCSMRACSLVYVFSLLEAVLQLRAFRFGLNPTI
LLLLKNTHQK*
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mRNA from alignment at H-canaliculatus_F_contig13515:1762..2148+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13515.2851.1 ID=mRNA_H-canaliculatus_F_contig13515.2851.1|Name=mRNA_H-canaliculatus_F_contig13515.2851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=387bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13515:1762..2148+ (Hapterophycus canaliculatus Oshoro5f female)
TGGCCAAGATTTGTTCCGAAATGTTTTTCTTTGTCAAATGCAAAAAGTTC
GCCCAGATATATCACAACATTTGCTTCCAAAACATGGCCGTCCAAATGTT
TTGGAGCAAATGTTGGCGAAGATAAACTTTTTACCCCTACTTTTTGCGAC
CATAGTAACCGGTCTGAGGACCACCATTTTGAACATGGTGCTGCTGGTTG
CTGCTGCAGTATGAGAGCCTGCAGCCTAGTCTACGTGTTCAGTCTCTTGG
AAGCGGTTCTACAACTCCGTGCATTTCGATTCGGGTTGAATCCTACGATC
TTACTGTTGTTGAAGAATACTCACCAGAAATGATCACCTAACAGGCAGGC
AATCGCCGGGTGGTTAACACTCCGACCACTCTCCGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13515:1762..2148+

>mRNA_H-canaliculatus_F_contig13515.2851.1 ID=mRNA_H-canaliculatus_F_contig13515.2851.1|Name=mRNA_H-canaliculatus_F_contig13515.2851.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13515:1762..2148+ (Hapterophycus canaliculatus Oshoro5f female)
TGGCCAAGATTTGTTCCGAAATGTTTTTCTTTGTCAAATGCAAAAAGTTC
GCCCAGATATATCACAACATTTGCTTCCAAAACATGGCCGTCCAAATGTT
TTGGAGCAAATGTTGGCGAAGATAAACTTTTTACCCCTACTTTTTGCGAC
CATAGTAACCGGTCTGAGGACCACCATTTTGAACATGGTGCTGCTGGTTG
CTGCTGCAGTATGAGAGCCTGCAGCCTAGTCTACGTGTTCAGTCTCTTGG
AAGCGGTTCTACAACTCCGTGCATTTCGATTCGGGTTGAATCCTACGATC
TTACTGTTGTTGAAGAATACTCACCAGAAATGATGGCCAAGATTTGTTCC
GAAATGTTTTTCTTTGTCAAATGCAAAAAGTTCGCCCAGATATATCACAA
CATTTGCTTCCAAAACATGGCCGTCCAAATGTTTTGGAGCAAATGTTGGC
GAAGATAAACTTTTTACCCCTACTTTTTGCGACCATAGTAACCGGTCTGA
GGACCACCATTTTGAACATGGTGCTGCTGGTTGCTGCTGCAGTATGAGAG
CCTGCAGCCTAGTCTACGTGTTCAGTCTCTTGGAAGCGGTTCTACAACTC
CGTGCATTTCGATTCGGGTTGAATCCTACGATCTTACTGTTGTTGAAGAA
TACTCACCAGAAATGA
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