mRNA_H-canaliculatus_F_contig13508.2846.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13508.2846.1
Unique NamemRNA_H-canaliculatus_F_contig13508.2846.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.600e-31
Identity = 59/121 (48.76%), Postives = 85/121 (70.25%), Query Frame = -2 
Query:   22 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGVVANADRPCMSESSFFWRF 384
            T  D++TPRR+E++S+F+Q +L+    + + + V V+ I+GEV+ K   EVT TDWLRL VRE ALT G+ +LA SAF A++  P E W+AAAARV+  +R   A+ +RP M+E + FWRF
Sbjct:   72 TFADEFTPRRVELISDFVQEYLSVSQQIANADHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRF 192
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BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.930e-30
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = -2 
Query:   22 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGVVANADRPCMSESSFFWRF 384
            T  D++TPRR+E++S+ +Q +L+    + + + V V+ I+GEV+ K   EVT TDWLRL VRE ALT G+ +LA SAF A++  P E W+AAAARV+  +R   A+ +RP M+E + FWRF
Sbjct:   61 TFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRF 181
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BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.610e-26
Identity = 55/121 (45.45%), Postives = 81/121 (66.94%), Query Frame = -2 
Query:   22 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGVVANADRPCMSESSFFWRF 384
            TV D++TPRR+E++S+ +Q +      +   + V V+ I+GEV+ K   EVT TDWLRL VRE ALT  + +LA SAF A++  P + W+AAAAR++  +R   A+ +RP M+E + FWRF
Sbjct:  244 TVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHVYLINGEVITKPHREVTATDWLRLDVREHALTGVAAELACSAFSALTLTPEDGWSAAAARILSVFRATRADPERPYMTEQALFWRF 364
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BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.450e-22
Identity = 52/127 (40.94%), Postives = 80/127 (62.99%), Query Frame = -2 
Query:    4 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGVVANADRPCMSESSFFWRFLSEADM 384
            T PD +T RR E+L++ +  HL T + + S + V+V+ I+GEV+   ++ VT T WLRL+VRE ALT G+ + A +A  A+     E+   AAARV+  +R  + + DRP ++E  FFWR++S   M
Sbjct:   26 TQPDVHTGRRRELLTDLLHEHLLTHNQITSADTVQVYRITGEVVDTPRDSVTATHWLRLIVREHALTGGAVEYANAALQAMMLGTPESMPTAAARVLAAFRATLVDPDRPHITEQRFFWRYISAVQM 152
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BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-21
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = -2 
Query:    4 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGVVANADRPCMSESSFFWRFLSEADM 384
            T PD +T RR E+L++ +  HL T + + S + ++V+ I+G+V+   ++ VT TDWLRL+VRE ALT G+ + A +A  ++     E+   AAARV+  +R  + + DRP ++E  FFWR++S   M
Sbjct:  195 TQPDVHTGRRRELLTDLLHEHLLTHNRITSADSLQVYRIAGQVVDTPRDSVTATDWLRLIVREHALTGGAVEYAYAALQSMVLGTPESMPTAAARVLAAFRATLVDPDRPHVTEQRFFWRYISAVQM 321
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Match: A0A6H5KZ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.560e-11
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = -2 
Query:   76 TVPDQYTPRRIEMLSEFIQSHLATRDAMDSDEPVEVWSISGEVLVKQKEEVTCTDWLRLLVREQALTNGSKQLAESAFGAISRQPNEAWAAAAARVVKTYRGV 384
            T PD +T RR E+L++ +  HL T + + S + V+V+  +GEV+   ++  T TDWLRL+VRE ALT G+ + A ++  A+     E+   AAAR++  +  V
Sbjct:   68 TQPDVHTRRR-ELLTDLLHEHLLTHNQITSADTVQVYRKTGEVVDTPRDSATATDWLRLIVREHALTGGAVEYANASLQAMVLGAPESMPTAAARMIALFERV 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13508.2846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J849_9PHAE6.600e-3148.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH2_9PHAE6.930e-3047.93RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KZY5_9PHAE1.610e-2645.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8L9_9PHAE1.450e-2240.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFF6_9PHAE1.030e-2139.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ17_9PHAE1.560e-1137.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13508contigH-canaliculatus_F_contig13508:134..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.4669352-UTR-H-canaliculatus_F_contig13508:133..1371622929092.4669352-UTR-H-canaliculatus_F_contig13508:133..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13508 134..137 +
1696845676.697839-UTR-H-canaliculatus_F_contig13508:133..1371696845676.697839-UTR-H-canaliculatus_F_contig13508:133..137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13508 134..137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.4782228-CDS-H-canaliculatus_F_contig13508:137..5211622929092.4782228-CDS-H-canaliculatus_F_contig13508:137..521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13508 138..521 +
1696845676.7074726-CDS-H-canaliculatus_F_contig13508:137..5211696845676.7074726-CDS-H-canaliculatus_F_contig13508:137..521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13508 138..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13508.2846.1prot_H-canaliculatus_F_contig13508.2846.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13508 138..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13508.2846.1

>prot_H-canaliculatus_F_contig13508.2846.1 ID=prot_H-canaliculatus_F_contig13508.2846.1|Name=mRNA_H-canaliculatus_F_contig13508.2846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MSASDRKRQKKLDSDMHGRSAFATTPRYVFTTRAAAAAQASFGWREIAPK
ADSASCFEPLVSACSRTRRRSQSVQVTSSFCFTNTSPEIDHTSTGSSESM
ASLVARWLWMNSESISILRGVYWSGTVV
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mRNA from alignment at H-canaliculatus_F_contig13508:134..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13508.2846.1 ID=mRNA_H-canaliculatus_F_contig13508.2846.1|Name=mRNA_H-canaliculatus_F_contig13508.2846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=388bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13508:134..521+ (Hapterophycus canaliculatus Oshoro5f female)
ACGCATGTCAGCCTCAGACAGAAAACGCCAGAAAAAGCTGGATTCGGACA
TGCATGGGCGGTCTGCGTTTGCGACAACACCGCGGTATGTCTTCACCACC
CGAGCTGCAGCGGCAGCCCAGGCCTCATTTGGTTGGCGAGAGATAGCTCC
GAAAGCTGACTCGGCCAGCTGCTTTGAGCCATTGGTCAGCGCTTGTTCGC
GGACAAGGAGGCGAAGCCAATCAGTGCAAGTTACCTCCTCCTTCTGTTTC
ACTAACACTTCTCCGGAGATCGACCATACCTCTACCGGCTCATCGGAATC
CATGGCATCTCTAGTGGCGAGGTGGCTTTGGATGAATTCAGAAAGCATCT
CGATCCTGCGCGGTGTGTATTGGTCGGGCACAGTGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13508:134..521+

>mRNA_H-canaliculatus_F_contig13508.2846.1 ID=mRNA_H-canaliculatus_F_contig13508.2846.1|Name=mRNA_H-canaliculatus_F_contig13508.2846.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13508:134..521+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAGCCTCAGACAGAAAACGCCAGAAAAAGCTGGATTCGGACATGCA
TGGGCGGTCTGCGTTTGCGACAACACCGCGGTATGTCTTCACCACCCGAG
CTGCAGCGGCAGCCCAGGCCTCATTTGGTTGGCGAGAGATAGCTCCGAAA
GCTGACTCGGCCAGCTGCTTTGAGCCATTGGTCAGCGCTTGTTCGCGGAC
AAGGAGGCGAAGCCAATCAGTGCAAGTTACCTCCTCCTTCTGTTTCACTA
ACACTTCTCCGGAGATCGACCATACCTCTACCGGCTCATCGGAATCCATG
GCATCTCTAGTGGCGAGGTGGCTTTGGATGAATTCAGAAAGCATCTCGAT
CCTGCGCGGTGTGTATTGGTCGGGCACAGTGGTCATGTCAGCCTCAGACA
GAAAACGCCAGAAAAAGCTGGATTCGGACATGCATGGGCGGTCTGCGTTT
GCGACAACACCGCGGTATGTCTTCACCACCCGAGCTGCAGCGGCAGCCCA
GGCCTCATTTGGTTGGCGAGAGATAGCTCCGAAAGCTGACTCGGCCAGCT
GCTTTGAGCCATTGGTCAGCGCTTGTTCGCGGACAAGGAGGCGAAGCCAA
TCAGTGCAAGTTACCTCCTCCTTCTGTTTCACTAACACTTCTCCGGAGAT
CGACCATACCTCTACCGGCTCATCGGAATCCATGGCATCTCTAGTGGCGA
GGTGGCTTTGGATGAATTCAGAAAGCATCTCGATCCTGCGCGGTGTGTAT
TGGTCGGGCACAGTGGTC
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