mRNA_H-canaliculatus_F_contig13507.2845.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13507.2845.1
Unique NamemRNA_H-canaliculatus_F_contig13507.2845.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13507.2845.1 vs. uniprot
Match: D7G5I5_ECTSI (Regulator of G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 4.030e-16
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:  844 GAKAGAERPCLLLESPFFCKGNGTEGMKVVLGNADLRAGFKQASLLLFLTKRWCAENLAFVEDVMR 1041
            G +A AERP +LLE PFFCK NGTE M+ VL NADLRAGFKQ     FL KR CAENL FVEDVMR
Sbjct:  276 GVRALAERPRVLLELPFFCKENGTEEMRAVLENADLRAGFKQ-----FLAKRLCAENLVFVEDVMR 336
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BLAST of mRNA_H-canaliculatus_F_contig13507.2845.1 vs. uniprot
Match: A0A6H5KTY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.630e-9
Identity = 55/133 (41.35%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:  583 RWSGARSLFAQAVSAFSSATPDDDPSRPSSPSLGKATTAGAEAPAHDGSAC----LGPGGSATAIGGVPRGDDNGRDEVVEAXXXXXXXRDGAKAGAERPCLLLESPFFCKGNGTEGMKVVLGNADLRAGFKQ 969
            RWS   SLFAQA+SAFS+  P   P+  SSP++            H GS         GG      G PR   +GR  V            G +A AE P +LL+ PFFCK NGTE M+ VL NADLRAG+++
Sbjct:  391 RWSSQTSLFAQAISAFSAIGPVPPPA--SSPTV------------HPGSGVSTVTAQDGGGGGXPDGAPRVWWDGR--VSAEPSTAAKLGGGVQALAEGPRVLLKLPFFCKENGTEEMRAVLENADLRAGYQE 507
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13507.2845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I5_ECTSI4.030e-1671.21Regulator of G protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTY4_9PHAE5.630e-941.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13507contigH-canaliculatus_F_contig13507:1712..3040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1044
Cds size1044
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13507.2845.1prot_H-canaliculatus_F_contig13507.2845.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13507 1712..3040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.3734183-CDS-H-canaliculatus_F_contig13507:1711..17711622929092.3734183-CDS-H-canaliculatus_F_contig13507:1711..1771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 1712..1771 -
1696845676.6686394-CDS-H-canaliculatus_F_contig13507:1711..17711696845676.6686394-CDS-H-canaliculatus_F_contig13507:1711..1771Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 1712..1771 -
1622929092.3897653-CDS-H-canaliculatus_F_contig13507:1939..25421622929092.3897653-CDS-H-canaliculatus_F_contig13507:1939..2542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 1940..2542 -
1696845676.6770582-CDS-H-canaliculatus_F_contig13507:1939..25421696845676.6770582-CDS-H-canaliculatus_F_contig13507:1939..2542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 1940..2542 -
1622929092.4059925-CDS-H-canaliculatus_F_contig13507:2659..30401622929092.4059925-CDS-H-canaliculatus_F_contig13507:2659..3040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 2660..3040 -
1696845676.6879494-CDS-H-canaliculatus_F_contig13507:2659..30401696845676.6879494-CDS-H-canaliculatus_F_contig13507:2659..3040Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13507 2660..3040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13507.2845.1

>prot_H-canaliculatus_F_contig13507.2845.1 ID=prot_H-canaliculatus_F_contig13507.2845.1|Name=mRNA_H-canaliculatus_F_contig13507.2845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=348bp
GGGGGGEGEEEEQDRAVSVLGRPSEAARSPSGVFFPTGGNPGSGRAAFFG
GDVDHPGSAAGSSLAGGKSTAGASERQRHRKRGSEGGGERRADRDVADVK
LASGRHPQGGDEGATGHGRKGEPLATARWWSLKAVEREEGSRWWSPAPEV
AEREREEEGGASWWPRRKSGSSARGGVRSGSAPAGEDDDDDDDIRWSGAR
SLFAQAVSAFSSATPDDDPSRPSSPSLGKATTAGAEAPAHDGSACLGPGG
SATAIGGVPRGDDNGRDEVVEAAGGGGGGRDGAKAGAERPCLLLESPFFC
KGNGTEGMKVVLGNADLRAGFKQASLLLFLTKRWCAENLAFVEDVMR*
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mRNA from alignment at H-canaliculatus_F_contig13507:1712..3040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13507.2845.1 ID=mRNA_H-canaliculatus_F_contig13507.2845.1|Name=mRNA_H-canaliculatus_F_contig13507.2845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1329bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13507:1712..3040- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGAAGGGGAGGAGGAGGAACAAGACCGAGCAGT
AAGCGTCCTTGGCAGGCCAAGCGAGGCCGCGAGGAGTCCCTCGGGCGTGT
TCTTCCCTACCGGCGGCAACCCCGGGAGCGGCCGCGCGGCGTTCTTCGGC
GGGGACGTTGACCACCCCGGTAGTGCGGCGGGCTCGTCGCTCGCGGGGGG
TAAATCTACGGCCGGCGCGTCCGAGCGGCAGCGCCATAGAAAGCGAGGCT
CCGAGGGGGGAGGTGAGAGGAGGGCGGACAGGGATGTGGCGGACGTTAAG
TTAGCCTCCGGGCGGCACCCGCAGGGAGGAGATGAAGGGGCAACCGGGCA
CGGGCGGAAGGGCGAGCCGCTCGCGACGGCTGTGGCGGCCGCACAACGGG
CGGAGACGGCGGCGGAGACGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCG
GCGGCGGCGGCGGCGGCCGCGACAGGAGAGGGAGCAGGAGACGACGAGAG
GTGGTGGTCGCTCAAGGCGGTCGAACGAGAAGAAGGCAGCAGATGGTGGT
CCCCGGCCCCCGAGGTAGCGGAACGTGAGCGAGAGGAGGAAGGCGGGGCG
AGCTGGTGGCCAAGGCGCAAGAGCGGCTCGAGCGCCCGCGGCGGGGTCCG
CAGCGGCAGCGCTCCCGCCGGCGAAGACGACGACGACGACGACGACATAC
GATGGAGCGGGGCCCGAAGTCTGTTCGCCCAGGCCGTCTCCGCGTTCTCC
TCGGCGACCCCGGATGACGACCCGTCACGCCCCTCCTCTCCCTCGCTAGG
CAAGGCTACGACGGCTGGTGCTGAAGCACCAGCCCACGACGGTAGCGCCT
GCCTCGGCCCGGGCGGGTCGGCGACGGCGATAGGGGGGGTTCCGCGGGGT
GACGACAACGGCCGGGACGAGGTGGTGGAGGCGGCGGGGGGTGGTGGCGG
GGGCCGCGACGGGGCGAAGGCCGGGGCGGAGAGGCCCTGCCTGCTGCTAG
AATCGCCGTTTTTCTGCAAGGGGAACGGTACGGAAGGCATGAAGGTCGTG
CTGGGGAATGCGGACTTGCGCGCGGGTTTCAAGCAGGCGAGTCTCCTTCT
TGTCCTTCCAAACCTGTTTTTCCGTCTTGGGGAAGCCGCCAGTGCCGATG
CTGATGTCGTTAACGCGGCTTCCCGGCGGGCCCCGAGCGAGGACAAGCTC
TCTGACTCAGCTCTACGCCCGCACACCCCCACCGCCCCTACCCCGACCTT
ATTTTTTAACCCGATCCAGTTTCTGACGAAGAGATGGTGCGCCGAGAACC
TGGCCTTCGTTGAGGACGTCATGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13507:1712..3040-

>mRNA_H-canaliculatus_F_contig13507.2845.1 ID=mRNA_H-canaliculatus_F_contig13507.2845.1|Name=mRNA_H-canaliculatus_F_contig13507.2845.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2088bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13507:1712..3040- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGAAGGGGAGGAGGAGGAACAAGACCGAGCAGT
AAGCGTCCTTGGCAGGCCAAGCGAGGCCGCGAGGAGTCCCTCGGGCGTGT
TCTTCCCTACCGGCGGCAACCCCGGGAGCGGCCGCGCGGCGTTCTTCGGC
GGGGACGTTGACCACCCCGGTAGTGCGGCGGGCTCGTCGCTCGCGGGGGG
TAAATCTACGGCCGGCGCGTCCGAGCGGCAGCGCCATAGAAAGCGAGGCT
CCGAGGGGGGAGGTGAGAGGAGGGCGGACAGGGATGTGGCGGACGTTAAG
TTAGCCTCCGGGCGGCACCCGCAGGGAGGAGATGAAGGGGCAACCGGGCA
CGGGCGGAAGGGCGAGCCGCTCGCGACGGCTGGGGGGGGGGGGGGGGGGG
AAGGGGAGGAGGAGGAACAAGACCGAGCAGTAAGCGTCCTTGGCAGGCCA
AGCGAGGCCGCGAGGAGTCCCTCGGGCGTGTTCTTCCCTACCGGCGGCAA
CCCCGGGAGCGGCCGCGCGGCGTTCTTCGGCGGGGACGTTGACCACCCCG
GTAGTGCGGCGGGCTCGTCGCTCGCGGGGGGTAAATCTACGGCCGGCGCG
TCCGAGCGGCAGCGCCATAGAAAGCGAGGCTCCGAGGGGGGAGGTGAGAG
GAGGGCGGACAGGGATGTGGCGGACGTTAAGTTAGCCTCCGGGCGGCACC
CGCAGGGAGGAGATGAAGGGGCAACCGGGCACGGGCGGAAGGGCGAGCCG
CTCGCGACGGCTAGGTGGTGGTCGCTCAAGGCGGTCGAACGAGAAGAAGG
CAGCAGATGGTGGTCCCCGGCCCCCGAGGTAGCGGAACGTGAGCGAGAGG
AGGAAGGCGGGGCGAGCTGGTGGCCAAGGCGCAAGAGCGGCTCGAGCGCC
CGCGGCGGGGTCCGCAGCGGCAGCGCTCCCGCCGGCGAAGACGACGACGA
CGACGACGACATACGATGGAGCGGGGCCCGAAGTCTGTTCGCCCAGGCCG
TCTCCGCGTTCTCCTCGGCGACCCCGGATGACGACCCGTCACGCCCCTCC
TCTCCCTCGCTAGGCAAGGCTACGACGGCTGGTGCTGAAGCACCAGCCCA
CGACGGTAGCGCCTGCCTCGGCCCGGGCGGGTCGGCGACGGCGATAGGGG
GGGTTCCGCGGGGTGACGACAACGGCCGGGACGAGGTGGTGGAGGCGGCG
GGGGGTGGTGGCGGGGGCCGCGACGGGGCGAAGGCCGGGGCGGAGAGGCC
CTGCCTGCTGCTAGAATCGCCGTTTTTCTGCAAGGGGAACGGTACGGAAG
GCATGAAGGTCGTGCTGGGGAATGCGGACTTGCGCGCGGGTTTCAAGCAG
GCGAGTCTCCTTCTTAGGTGGTGGTCGCTCAAGGCGGTCGAACGAGAAGA
AGGCAGCAGATGGTGGTCCCCGGCCCCCGAGGTAGCGGAACGTGAGCGAG
AGGAGGAAGGCGGGGCGAGCTGGTGGCCAAGGCGCAAGAGCGGCTCGAGC
GCCCGCGGCGGGGTCCGCAGCGGCAGCGCTCCCGCCGGCGAAGACGACGA
CGACGACGACGACATACGATGGAGCGGGGCCCGAAGTCTGTTCGCCCAGG
CCGTCTCCGCGTTCTCCTCGGCGACCCCGGATGACGACCCGTCACGCCCC
TCCTCTCCCTCGCTAGGCAAGGCTACGACGGCTGGTGCTGAAGCACCAGC
CCACGACGGTAGCGCCTGCCTCGGCCCGGGCGGGTCGGCGACGGCGATAG
GGGGGGTTCCGCGGGGTGACGACAACGGCCGGGACGAGGTGGTGGAGGCG
GCGGGGGGTGGTGGCGGGGGCCGCGACGGGGCGAAGGCCGGGGCGGAGAG
GCCCTGCCTGCTGCTAGAATCGCCGTTTTTCTGCAAGGGGAACGGTACGG
AAGGCATGAAGGTCGTGCTGGGGAATGCGGACTTGCGCGCGGGTTTCAAG
CAGGCGAGTCTCCTTCTTTTTCTGACGAAGAGATGGTGCGCCGAGAACCT
GGCCTTCGTTGAGGACGTCATGAGGTGATTTCTGACGAAGAGATGGTGCG
CCGAGAACCTGGCCTTCGTTGAGGACGTCATGAGGTGA
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