mRNA_H-canaliculatus_F_contig13503.2844.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13503.2844.1
Unique NamemRNA_H-canaliculatus_F_contig13503.2844.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A6H5JH16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH16_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.680e-75
Identity = 170/286 (59.44%), Postives = 181/286 (63.29%), Query Frame = 1 
Query:  361 VDGRRWEEADAPFRDNSGGGEAGGLDGEGGAR---TGEVKMEVGCRAALQVAPAAAMKSAVVGAQKAEAGSRVAEAL-GGVVAGASSSCHGSKASELPAISAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQAVPEAELSDDDYDALCRREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALMLQ 1206
            VD RRWEE D PFRDN       GL   G AR   TGE K +     +L+ A   A +   +GAQ       VAE   GG+ A AS      KA E PA  A                                          A    +LSD++YD +C+REDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPG  GCPFHVYLEHLENQDPRRSRLKPL LQMPPAAWLPLMDIDFAAPFRCLSVQSVL VFALMLQ
Sbjct:  455 VDERRWEEGDVPFRDNPLDVRPKGLA-LGAARELATGEAKAQ---EQSLEGAARGATQGVAIGAQG------VAEPTEGGITASASPR---PKAVEPPAAGATLGHRVWVSAAAAAGRGGNDGGDGRGSS------------NPAAGLDDLSDEEYDLMCQREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPG--GCPFHVYLEHLENQDPRRSRLKPLALQMPPAAWLPLMDIDFAAPFRCLSVQSVLTVFALMLQ 713
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: D7G3F8_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F8_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 3.140e-74
Identity = 177/289 (61.25%), Postives = 190/289 (65.74%), Query Frame = 1 
Query:  361 VDGRRWEEADAPFRDN--SGGGEAGGLDG-----EGGARTGEVKMEVGCRAALQVAPAAAMKSAVVGAQKAEAGSRVAEALGGVVAGASSSCHGSKASELPAISAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRQAVPEAELSDDDYDALCRREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALMLQ 1206
            VDGRRWEE D PFRD     G E   L       +G A+  E  +E   R A    P AA+ + VV               GG+ A ASS     KA E P+ +A            XXXXXXXXXXXX                       +LSD++YD +C+REDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPG  GCPFHVYLEHLENQDPRRSRLKPL LQMPPAAWLPLMDIDFAAPFRCLSVQSVL VFALMLQ
Sbjct:  386 VDGRRWEEGDVPFRDTLRDVGPEGVALGAARELTKGEAKAKEQSLEGAARGAT---PGAAIGTHVV----------AGPTEGGITASASSR---PKAVEPPSAAATLGHRVSVSAAAXXXXXXXXXXXXRGSS------------NPTAGSDDLSDEEYDLMCQREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPG--GCPFHVYLEHLENQDPRRSRLKPLSLQMPPAAWLPLMDIDFAAPFRCLSVQSVLTVFALMLQ 644
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A4D9CQX3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQX3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.290e-23
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:  850 IFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYL---EHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALML 1203
            +FAPK IC+IS +P Y  LR FL+ +Y ISLS S VPLERYI+ F   +P+PPPG      H+ L   + +EN     S L P+ L +P    LPLMD+D+ APFRCLS+ +VL +F L+L
Sbjct:  430 LFAPKCICIISHWPFYRALRSFLQQIYRISLSPSRVPLERYIAYFTHYMPLPPPGQHVLNLHLDLGMQDRIEN-----STLAPITLHLPDTRSLPLMDLDYEAPFRCLSLDNVLKIFVLLL 545
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: W7T7D8_9STRA (UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7D8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.970e-23
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:  850 IFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYL---EHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALML 1203
            +FAPK IC+IS +P Y  LR FL+ +Y ISLS S VPLERYI+ F   +P+PPPG      H+ L   + +EN     S L P+ L +P    LPLMD+D+ APFRCLS+ +VL +F L+L
Sbjct:  430 LFAPKCICIISHWPFYRALRSFLQQIYRISLSPSRVPLERYIAYFTHYMPLPPPGQHVLNLHLDLGMQDRIEN-----STLAPITLHLPDTRSLPLMDLDYEAPFRCLSLDNVLKIFVLLL 545
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A482T704_9ARCH (UDENN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T704_9ARCH)

HSP 1 Score: 110 bits (276), Expect = 1.690e-22
Identity = 57/119 (47.90%), Postives = 79/119 (66.39%), Query Frame = 1 
Query:  850 IFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALMLQ 1206
            IF PK ICV++R P Y  +RR+LRH+Y++SLS +  PLE +IS  V  +P+P  G  G PFHV L+       +   + P++ Q+PP  + PLMD+DFA P RC+SV  +LAVF LML+
Sbjct:   33 IFCPKVICVLTRKPFYRAMRRYLRHIYSLSLSTAICPLEHFISTIVHQVPLPVEG--GRPFHVVLD-AALISVKSKPMSPIIFQVPPQRFFPLMDLDFAGPLRCMSVDVMLAVFLLMLR 148
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A7S4MXS3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXS3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.840e-14
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 1 
Query:  790 EAELSDDDYDALCRREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAV 1188
            E + +D+D D+     +    F  KTIC++SR+P +   RRFL +L+ +S S SD+PLER IS  +  +P+P PG  G    V L  L +         P+++ MPPA  LPL+D+ F   F CL V +V+ V
Sbjct:  544 EEDAADEDDDSFLTGFEEMTTFENKTICLVSRYPFWTAFRRFLSNLHVMSGSSSDLPLERCISHLLLTVPVPKPG--GQCVIVPLHTLRS---------PMVMAMPPAKDLPLVDLPFQRLFACLDVPTVVTV 665
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A7S2CMN3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMN3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.430e-12
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:  835 EDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMP 1107
            E+   ++ PK +CV+S +PIY  L+RFL  LY ISLS   VPLER++S FVS  P+P PG S    H+    ++ +    S L P++L +P
Sbjct:  239 EEEMVVYEPKCLCVVSNWPIYRSLKRFLMQLYTISLSSCRVPLERFVSTFVSYTPLPRPGASEVHLHLDKALVDVEAGEVSSLDPIVLHLP 329
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A6A5BZU6_NAEFO (UDENN domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BZU6_NAEFO)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-11
Identity = 48/144 (33.33%), Postives = 75/144 (52.08%), Query Frame = 1 
Query:  775 RQAVPEAELSDDDYDALCRREDRPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALMLQ 1206
            R+A  + +L    +D +        I+  K+IC+IS +P Y V + FL  +Y IS++ S +P+ER+IS FVS +P+P  G           H    D      K + +  PP   LPL ++DF   F  LS+ ++L +F L+LQ
Sbjct:  175 RKAQVDEDLISVVFDPIKTERKSSTIYMSKSICIISHYPFYNVFKFFLTQMYRISITPSKIPIERFISNFVSEVPLPSQGKVQV-------HYSIGD------KEIYITRPPPNDLPLAELDFELLFSVLSLDNILILFDLILQ 305
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A8K1CDD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDD8_PYTOL)

HSP 1 Score: 72.8 bits (177), Expect = 5.000e-10
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:  850 IFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVF 1191
            +F PK I V S +P +   R+FL+ +Y I+LS + +P+ERYI+ FVS +P+PP G       +         P R+    L++  PP   LPL+D  F   F+ L V +VL +F
Sbjct:  382 VFCPKCIVVTSHYPYFSAFRQFLQQVYRITLSEAPMPIERYITNFVSEVPLPPRGQIQVQLTL---------PDRN----LVISRPPHNELPLVDFSFRPLFQALDVNNVLQLF 482
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BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Match: A0A024G4T3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4T3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.270e-8
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 1 
Query:  850 IFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEHLENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVF 1191
            I+ PK I ++S +P +   + FLR +Y ++LS S +PLERYI+ FVS IP+PP G         L  ++   P         +  PP     L+D  F   FR L + ++L +F
Sbjct:  297 IYRPKCILILSHYPFFTTFQEFLRQIYRVTLSESPMPLERYITNFVSEIPVPPKG---------LVQVQITFPEDIHT----IFRPPKNTFSLVDYSFRPLFRTLDINNILTIF 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13503.2844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JH16_9PHAE1.680e-7559.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F8_ECTSI3.140e-7461.25UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CQX3_9STRA2.290e-2349.59Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T7D8_9STRA2.970e-2349.59UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A482T704_9ARCH1.690e-2247.90UDENN domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S4MXS3_9STRA9.840e-1438.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2CMN3_9STRA2.430e-1242.86Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A6A5BZU6_NAEFO1.050e-1133.33UDENN domain-containing protein n=2 Tax=Naegleria ... [more]
A0A8K1CDD8_PYTOL5.000e-1036.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G4T3_9STRA3.270e-834.21Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13503contigH-canaliculatus_F_contig13503:521..2733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.5
Seed ortholog evalue2e-68
Seed eggNOG ortholog2880.D7G3F8
Preferred nameSCD1
KEGG koko:K20161
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759,KOG2127@1,KOG2127@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categorymitochondrion
Exons3
Model size1208
Cds size1206
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13503.2844.1prot_H-canaliculatus_F_contig13503.2844.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13503 521..2733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929092.297731-CDS-H-canaliculatus_F_contig13503:520..12281622929092.297731-CDS-H-canaliculatus_F_contig13503:520..1228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 521..1228 +
1696845676.6360147-CDS-H-canaliculatus_F_contig13503:520..12281696845676.6360147-CDS-H-canaliculatus_F_contig13503:520..1228Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 521..1228 +
1622929092.3113334-CDS-H-canaliculatus_F_contig13503:1888..21981622929092.3113334-CDS-H-canaliculatus_F_contig13503:1888..2198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 1889..2198 +
1696845676.649375-CDS-H-canaliculatus_F_contig13503:1888..21981696845676.649375-CDS-H-canaliculatus_F_contig13503:1888..2198Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 1889..2198 +
1622929092.3267648-CDS-H-canaliculatus_F_contig13503:2545..27331622929092.3267648-CDS-H-canaliculatus_F_contig13503:2545..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 2546..2733 +
1696845676.6599038-CDS-H-canaliculatus_F_contig13503:2545..27331696845676.6599038-CDS-H-canaliculatus_F_contig13503:2545..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13503 2546..2733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13503.2844.1

>prot_H-canaliculatus_F_contig13503.2844.1 ID=prot_H-canaliculatus_F_contig13503.2844.1|Name=mRNA_H-canaliculatus_F_contig13503.2844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=402bp
ASWTKLSTATLAAHRYSGSLVAAAAASGQERQRPQLSAAEVFSTGIGDGA
GDGAGADADLAEADGRGGGDGEAGVMPSRRQPHDHDRRGHHQEREEGTPS
RGEVAAACGSGGGGGGLPCHVDGRRWEEADAPFRDNSGGGEAGGLDGEGG
ARTGEVKMEVGCRAALQVAPAAAMKSAVVGAQKAEAGSRVAEALGGVVAG
ASSSCHGSKASELPAISAAAAAGEAEVAAAAAATASVPLLACRDSDTGGG
GGGGGGGPRQAVPEAELSDDDYDALCRREDRPCIFAPKTICVISRFPIYG
VLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGTSGCPFHVYLEH
LENQDPRRSRLKPLLLQMPPAAWLPLMDIDFAAPFRCLSVQSVLAVFALM
LQ
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mRNA from alignment at H-canaliculatus_F_contig13503:521..2733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13503.2844.1 ID=mRNA_H-canaliculatus_F_contig13503.2844.1|Name=mRNA_H-canaliculatus_F_contig13503.2844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2213bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13503:521..2733+ (Hapterophycus canaliculatus Oshoro5f female)
GCCTCGTGGACGAAGCTGTCGACCGCCACGTTGGCGGCTCACCGCTACAG
CGGCTCCTTGGTCGCGGCGGCGGCGGCCTCCGGCCAAGAGCGGCAGCGCC
CGCAGCTTTCGGCCGCCGAGGTTTTTTCCACCGGCATTGGTGATGGTGCG
GGGGATGGCGCCGGGGCCGACGCTGACCTCGCCGAGGCGGATGGGAGGGG
GGGCGGTGATGGCGAGGCGGGGGTGATGCCGAGCCGTCGCCAGCCCCACG
ACCACGACCGACGCGGCCACCACCAGGAGAGAGAAGAGGGCACGCCCTCG
CGAGGTGAAGTAGCGGCCGCTTGCGGCAGCGGGGGTGGCGGGGGCGGCTT
GCCCTGCCACGTGGACGGGCGGCGTTGGGAGGAAGCCGACGCACCTTTTC
GAGATAATTCCGGCGGTGGAGAGGCCGGGGGGTTAGATGGGGAAGGGGGG
GCGAGAACGGGCGAGGTGAAAATGGAGGTGGGATGTCGTGCGGCTCTGCA
GGTGGCTCCTGCAGCGGCGATGAAGTCGGCCGTGGTGGGTGCACAGAAGG
CTGAGGCTGGGAGTCGGGTTGCGGAGGCTTTGGGAGGAGTCGTGGCCGGT
GCCTCCTCGTCTTGCCATGGGTCTAAGGCCTCTGAGCTGCCAGCGATATC
TGCGGCGGCAGCAGCAGGGGAGGCAGAGGTAGCGGCAGCAGCGGCGGCGA
CGGCATCGGTGCGTGATCAGAGGCGGGTCGACGCGCTTCAAAAAAGTTGT
GTGCGAAACGCCTGCCAGGGCCGTGTATGTATGCGACCGCGATCTGCGGT
ACCAAAGAAAGCGTCCATCAAGAAGGCCTTTGAAACTGTCCTTGGCGTGC
TGATGGTCCACGCATCTGCTACCCGCTTGGGTTGCAACCCTGATACTGGT
GTTTTTCGCTGTCTTAACAAGGCCGGGATAGGGGGGGGGGGTTGCAATGG
CGCGCGGCATGCGTAAAAAATCTGCAATGTCTTCTCGATTGACTCGGCCT
CCCCCGCGCCAACACGGGTACGCATCTTTGGTTTGGACGGTCGCGGTCCT
TCGGCCGCACGTGGATTCCCCCGCACATTATTACCGTATATGACGCAAGA
TAACACGCCCCTTAGACAGATTTTCAAACCTCAAGTTCTCCACAGCAACA
GACACATCGGCCCCAAAAAGGGCGGCGTTGGAAAAAGTCCTCCAAGGTCT
GCCAGAAAACATGCCATCTGGCGTTGGAATCGTACTCGTTGCGGAGTAAT
CGAGCTTTGAAAATCGGTCCAGGGGGTTCGTTATCTCAAGTCATACACGG
TAGTCCTCACCTCTTTTCCGCCTTTTCGCGTCCATGCGCTCCCGTCTCAC
CGCCGTCACCACCACCAGGTGCCCTTGTTGGCGTGCAGAGACAGCGACAC
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCCACGACAGGCGGTACCGG
AGGCCGAGCTCAGCGACGACGACTACGACGCCCTGTGTCGGCGGGAGGAC
CGCCCTTGCATCTTCGCGCCGAAGACCATCTGCGTCATCTCTCGGTTCCC
CATCTACGGGGTGCTCCGCAGGTTCTTGCGCCACCTGTACGCCATCAGCC
TCTCCCGGTCCGACGTGCCCCTCGAGCGGTACATATCCATGTTCGTGTCC
TGCATCCCGATGCCGCCGCCAGGTACTAGTAGGTGCCGCCGTTTTTTCTC
GTGGAGGGCGGGCGTGCGGCGTTTAGTTTGGGTATGGAACCGGTCGTTCG
TCCGCCAAGTCTTAACACCACAGTCCATGTCGCACGTGAGGGTGGTAGGT
GGGCACGCCGTGGCGATCGTTCCCGGGGCCTGAGACCTTCCCCTCGCCGA
CGCGGGCGCGACGGCTCGGCCGCTGCCCCTACCCACAGCGGTGCCTCCAC
CCGTCGAGCCGAGAGCGCTCCGAAAAAGAGGCACCACCGACCGCGTGCTT
GCTCGCGTTCGTTCCGCGTCCCCCGTGCTCGGTCGCGGCGCGTTTTGGGG
CGCACGCACGGCGCCCCGGCTGCAGGCGGCTGCCCGTTCCACGTCTACCT
GGAGCACCTGGAGAACCAGGACCCCCGGCGGTCCCGCCTCAAGCCCCTGC
TGCTGCAGATGCCGCCGGCCGCTTGGCTCCCGCTGATGGACATCGACTTC
GCTGCCCCCTTCCGCTGCCTCTCGGTGCAGTCCGTGCTCGCCGTCTTTGC
GCTGATGCTTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13503:521..2733+

>mRNA_H-canaliculatus_F_contig13503.2844.1 ID=mRNA_H-canaliculatus_F_contig13503.2844.1|Name=mRNA_H-canaliculatus_F_contig13503.2844.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2412bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13503:521..2733+ (Hapterophycus canaliculatus Oshoro5f female)
GCCTCGTGGACGAAGCTGTCGACCGCCACGTTGGCGGCTCACCGCTACAG
CGGCTCCTTGGTCGCGGCGGCGGCGGCCTCCGGCCAAGAGCGGCAGCGCC
CGCAGCTTTCGGCCGCCGAGGTTTTTTCCACCGGCATTGGTGATGGTGCG
GGGGATGGCGCCGGGGCCGACGCTGACCTCGCCGAGGCGGATGGGAGGGG
GGGCGGTGATGGCGAGGCGGGGGTGATGCCGAGCCGTCGCCAGCCCCACG
ACCACGACCGACGCGGCCACCACCAGGAGAGAGAAGAGGGCACGCCCTCG
CGAGGTGAAGTAGCGGCCGCTTGCGGCAGCGGGGGTGGCGGGGGCGGCTT
GCCCTGCCACGTGGACGGGCGGCGTTGGGAGGAAGCCGACGCACCTTTTC
GAGATAATTCCGGCGGTGGAGAGGCCGGGGGGTTAGATGGGGAAGGGGGG
GCGAGAACGGGCGAGGTGAAAATGGAGGTGGGATGTCGTGCGGCTCTGCA
GGTGGCTCCTGCAGCGGCGATGAAGTCGGCCGTGGTGGGTGCACAGAAGG
CTGAGGCTGGGAGTCGGGTTGCGGAGGCTTTGGGAGGAGTCGTGGCCGGT
GCCTCCTCGTCTTGCCATGGGTCTAAGGCCTCTGAGCTGCCAGCGATATC
TGCGGCGGCAGCAGCAGGGGAGGCAGAGGTAGCGGCAGCAGCGGCGGCGA
CGGCATCGGCCTCGTGGACGAAGCTGTCGACCGCCACGTTGGCGGCTCAC
CGCTACAGCGGCTCCTTGGTCGCGGCGGCGGCGGCCTCCGGCCAAGAGCG
GCAGCGCCCGCAGCTTTCGGCCGCCGAGGTTTTTTCCACCGGCATTGGTG
ATGGTGCGGGGGATGGCGCCGGGGCCGACGCTGACCTCGCCGAGGCGGAT
GGGAGGGGGGGCGGTGATGGCGAGGCGGGGGTGATGCCGAGCCGTCGCCA
GCCCCACGACCACGACCGACGCGGCCACCACCAGGAGAGAGAAGAGGGCA
CGCCCTCGCGAGGTGAAGTAGCGGCCGCTTGCGGCAGCGGGGGTGGCGGG
GGCGGCTTGCCCTGCCACGTGGACGGGCGGCGTTGGGAGGAAGCCGACGC
ACCTTTTCGAGATAATTCCGGCGGTGGAGAGGCCGGGGGGTTAGATGGGG
AAGGGGGGGCGAGAACGGGCGAGGTGAAAATGGAGGTGGGATGTCGTGCG
GCTCTGCAGGTGGCTCCTGCAGCGGCGATGAAGTCGGCCGTGGTGGGTGC
ACAGAAGGCTGAGGCTGGGAGTCGGGTTGCGGAGGCTTTGGGAGGAGTCG
TGGCCGGTGCCTCCTCGTCTTGCCATGGGTCTAAGGCCTCTGAGCTGCCA
GCGATATCTGCGGCGGCAGCAGCAGGGGAGGCAGAGGTAGCGGCAGCAGC
GGCGGCGACGGCATCGGTGCCCTTGTTGGCGTGCAGAGACAGCGACACCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCCCACGACAGGCGGTACCGGAG
GCCGAGCTCAGCGACGACGACTACGACGCCCTGTGTCGGCGGGAGGACCG
CCCTTGCATCTTCGCGCCGAAGACCATCTGCGTCATCTCTCGGTTCCCCA
TCTACGGGGTGCTCCGCAGGTTCTTGCGCCACCTGTACGCCATCAGCCTC
TCCCGGTCCGACGTGCCCCTCGAGCGGTACATATCCATGTTCGTGTCCTG
CATCCCGATGCCGCCGCCAGGTACTAGTGCCCTTGTTGGCGTGCAGAGAC
AGCGACACCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCCACGACAGGC
GGTACCGGAGGCCGAGCTCAGCGACGACGACTACGACGCCCTGTGTCGGC
GGGAGGACCGCCCTTGCATCTTCGCGCCGAAGACCATCTGCGTCATCTCT
CGGTTCCCCATCTACGGGGTGCTCCGCAGGTTCTTGCGCCACCTGTACGC
CATCAGCCTCTCCCGGTCCGACGTGCCCCTCGAGCGGTACATATCCATGT
TCGTGTCCTGCATCCCGATGCCGCCGCCAGGTACTAGCGGCTGCCCGTTC
CACGTCTACCTGGAGCACCTGGAGAACCAGGACCCCCGGCGGTCCCGCCT
CAAGCCCCTGCTGCTGCAGATGCCGCCGGCCGCTTGGCTCCCGCTGATGG
ACATCGACTTCGCTGCCCCCTTCCGCTGCCTCTCGGTGCAGTCCGTGCTC
GCCGTCTTTGCGCTGATGCTTCAGGCGGCTGCCCGTTCCACGTCTACCTG
GAGCACCTGGAGAACCAGGACCCCCGGCGGTCCCGCCTCAAGCCCCTGCT
GCTGCAGATGCCGCCGGCCGCTTGGCTCCCGCTGATGGACATCGACTTCG
CTGCCCCCTTCCGCTGCCTCTCGGTGCAGTCCGTGCTCGCCGTCTTTGCG
CTGATGCTTCAG
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