mRNA_H-canaliculatus_F_contig13502.2843.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.150e-56 Identity = 90/99 (90.91%), Postives = 94/99 (94.95%), Query Frame = 1
Query: 52 PDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 348
PDGMAMP VHTGVIRMRGLPFSATKQDV+NFFQGMPVTED+IQFVVRGDGRVTGEAFVSF SPA+SEAAMSRNG HMGTRYVELF ST EEI+RHMNRT
Sbjct: 207 PDGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEAAMSRNGNHMGTRYVELFASTPEEIVRHMNRT 305
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.010e-40 Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 1
Query: 40 GALGPDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
G+ G A A HTGVIRMRGLPFSATK DV+NFFQG+ V ++S+QFVVRGDGRVTGEAFV+ SPA++EAAM RNG +MG+RY+ELFPS EE RH +R
Sbjct: 122 GSAAATGQAGTAEHTGVIRMRGLPFSATKADVVNFFQGLNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAEAAMQRNGSNMGSRYIELFPSAIEEAARHTSR 223
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.510e-29 Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 79 HTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
HTG++R+RGLPFSA+K DV++FF G + EDSI+FVVR DGRVTGE++V F SP ++AAM+R+ +G+RYVELF ST +E R R
Sbjct: 23 HTGILRLRGLPFSASKADVLHFFDGYEIVEDSIEFVVRADGRVTGESYVQFTSPDAAKAAMARDRNVIGSRYVELFISTPDEYQRVTGR 111
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A1J3H8S3_NOCCA (Heterogeneous nuclear ribonucleoprotein H3 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H8S3_NOCCA) HSP 1 Score: 108 bits (271), Expect = 2.300e-28 Identity = 50/91 (54.95%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
A HTGV+R+RGLPFSA K+D+I+FF+ ++EDS+ V G+GR TGEAFV FGS +S AAM ++ K +G+RY+ELFPS+ EE+ ++R
Sbjct: 30 AEHTGVLRLRGLPFSAGKEDIIDFFKDFELSEDSVHVTVNGEGRPTGEAFVEFGSAHESRAAMVKDRKTLGSRYIELFPSSIEELEEALSR 120
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: UPI0006AB33F4 (heterogeneous nuclear ribonucleoprotein H3-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB33F4) HSP 1 Score: 106 bits (264), Expect = 1.670e-27 Identity = 48/91 (52.75%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
A HTG++R+RGLPFSA K+D+++FF+ ++EDSI V G+GR TG+AFV FGS +S AAM ++ K +G+RY+ELFPS+ EE+ ++R
Sbjct: 14 ADHTGILRLRGLPFSAGKEDILDFFKDFDLSEDSIHVTVNGEGRPTGDAFVEFGSAEESRAAMVKDRKMLGSRYIELFPSSVEELEDALSR 104
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A103XHG3_CYNCS (Nucleotide-binding, alpha-beta plait n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XHG3_CYNCS) HSP 1 Score: 112 bits (280), Expect = 2.100e-27 Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEE 324
A HTGV+R+RGLPFSA + D+++FF+ ++EDSI F V +GRVTGEAFV F SP DS AAM ++G +G+RY+ELFPST EE
Sbjct: 164 AEHTGVLRLRGLPFSANRDDIVDFFKDSDLSEDSIYFTVNSEGRVTGEAFVKFASPEDSRAAMVKDGMSLGSRYIELFPSTLEE 247
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A7N0TIK1_KALFE (RRM domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIK1_KALFE) HSP 1 Score: 110 bits (275), Expect = 2.740e-27 Identity = 50/91 (54.95%), Postives = 72/91 (79.12%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
AVHTGV+RMRGLP+SA+K D++NFF+ ++ED+I FV+ +GR +G+AFV F S DS+AAM ++ +G+RYVELFPST EE+ R +++
Sbjct: 184 AVHTGVLRMRGLPYSASKDDIVNFFKDFTLSEDAIHFVLNWEGRPSGDAFVKFASAEDSKAAMVKDRMSVGSRYVELFPSTPEEMSRALSK 274
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A6D2HFU6_9BRAS (RRM domain-containing protein n=5 Tax=Brassicaceae TaxID=3700 RepID=A0A6D2HFU6_9BRAS) HSP 1 Score: 109 bits (273), Expect = 6.250e-27 Identity = 50/91 (54.95%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNR 345
A HTGV+R+RGLPFSA K+D+I+FF+ ++EDS+ V G+GR TGEAFV FGS +S AAM ++ K +G+RY+ELFPS+ EE+ ++R
Sbjct: 191 AEHTGVLRLRGLPFSAGKEDIIDFFKDFEISEDSVHVTVNGEGRPTGEAFVEFGSAHESRAAMVKDRKTLGSRYIELFPSSVEELEEALSR 281
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A2R6P847_ACTCC (Epithelial splicing regulatory protein (Fragment) n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P847_ACTCC) HSP 1 Score: 110 bits (275), Expect = 1.230e-26 Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 1
Query: 73 AVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 348
A HTGV+R+RGLPFSA+K D+++FF+ ++EDSI ++ +GR TGEAF+ F S DS+AAMS++ K +G RY+ELFPST EE+ ++R+
Sbjct: 161 AEHTGVLRLRGLPFSASKDDIMDFFKDFVISEDSIHIIINSEGRPTGEAFMGFASAEDSKAAMSKDRKRLGNRYIELFPSTPEELDAAVSRS 252
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Match: A0A0D6R6G5_ARACU (RRM domain-containing protein n=4 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R6G5_ARACU) HSP 1 Score: 108 bits (269), Expect = 1.600e-26 Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 79 HTGVIRMRGLPFSATKQDVINFFQGMPVTEDSIQFVVRGDGRVTGEAFVSFGSPADSEAAMSRNGKHMGTRYVELFPSTSEEIMRHMNRT 348
HTG++++RGLPFSATK+D+I FF+ ++E ++ V DGR TGEAFV F + ADS+AAMS++ +G+RYVELFPST EE R +R+
Sbjct: 170 HTGILKLRGLPFSATKRDIIEFFRDYDLSESNVHIVTHSDGRATGEAFVEFSNSADSKAAMSKDKMMIGSRYVELFPSTREEASRAASRS 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13502.2843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13502.2843.1 >prot_H-canaliculatus_F_contig13502.2843.1 ID=prot_H-canaliculatus_F_contig13502.2843.1|Name=mRNA_H-canaliculatus_F_contig13502.2843.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp MGGGAGGALGPDGMAMPAVHTGVIRMRGLPFSATKQDVINFFQGMPVTEDback to top mRNA from alignment at H-canaliculatus_F_contig13502:696..2884- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13502.2843.1 ID=mRNA_H-canaliculatus_F_contig13502.2843.1|Name=mRNA_H-canaliculatus_F_contig13502.2843.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2189bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13502:696..2884- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13502:696..2884- >mRNA_H-canaliculatus_F_contig13502.2843.1 ID=mRNA_H-canaliculatus_F_contig13502.2843.1|Name=mRNA_H-canaliculatus_F_contig13502.2843.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13502:696..2884- (Hapterophycus canaliculatus Oshoro5f female)back to top |