mRNA_H-canaliculatus_F_contig13481.2826.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI) HSP 1 Score: 312 bits (800), Expect = 4.090e-95 Identity = 165/193 (85.49%), Postives = 177/193 (91.71%), Query Frame = 1
Query: 1 KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLELCFGGRTLKFWRILAAETFTDPG 579
KNVTNHVI VQNR R VN GLA+GIIFWS VVS IQTLSKV+TIAQVFP V++AAE + F+TSLLEAYLPV ILLIIINLLYF LKWMALHLEGYKTYSEVERAVMSRYFF+ LANVFVTIGAGSIKDAIEKI+ QP+ LL+VLGETVP VAVYFINLIIVKVVTGL+LELCFGGR+LKFWRIL AETFTDPG
Sbjct: 1474 KNVTNHVIHVQNRNRFVNLGLALGIIFWSVVVSGIQTLSKVETIAQVFPAVEKAAEENTFLTSLLEAYLPVTILLIIINLLYFILKWMALHLEGYKTYSEVERAVMSRYFFYQLANVFVTIGAGSIKDAIEKILQQPRELLNVLGETVPKVAVYFINLIIVKVVTGLLLELCFGGRSLKFWRILIAETFTDPG 1666
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE) HSP 1 Score: 311 bits (796), Expect = 1.310e-94 Identity = 165/193 (85.49%), Postives = 175/193 (90.67%), Query Frame = 1
Query: 1 KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLELCFGGRTLKFWRILAAETFTDPG 579
KNVTNHVI VQNR RLVN GLA+GIIFWS VVS IQTLSKVDTIAQVFP V++AAE + F+ S LEAYLPV ILLIIINLLYF LKWMALHLEGYKTYSEVERAVMSRYFF+ LANVFVTIGAGSIKDAIEKI+ QP LL+VLGETVP VAVYFINLIIVKVVTGL+LELCFGGR+LKFWRIL AETFTDPG
Sbjct: 1230 KNVTNHVIHVQNRNRLVNLGLALGIIFWSVVVSGIQTLSKVDTIAQVFPAVEKAAEENTFLASFLEAYLPVTILLIIINLLYFILKWMALHLEGYKTYSEVERAVMSRYFFYQLANVFVTIGAGSIKDAIEKILGQPTELLNVLGETVPKVAVYFINLIIVKVVTGLLLELCFGGRSLKFWRILFAETFTDPG 1422
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A836CNV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV2_9STRA) HSP 1 Score: 177 bits (448), Expect = 8.480e-48 Identity = 99/208 (47.60%), Postives = 133/208 (63.94%), Query Frame = 1
Query: 4 NVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIV-----------------KVVTGLMLELCFGGRTLKFWRILAAETFTDP 576
NVT H Q++ R+ V+A + VG++ WS +V IQ L+ ++ +FP ++ A+ H F+ LL YLPV +LL+++ LYF K +A +EGYK+ SEVERAVM RYF+F LANV+V++ +GSI DA+ I+ P LS+LG+ +P VAVYF LII VV GLM+ELCFGGR LKFWRIL E FTDP
Sbjct: 990 NVTRHHTQIKYRRMFVSAIVLVGLVCWSLIVIGIQALTSPASLDAIFPGIEAYAKAHPFMGDLLSTYLPVVLLLLLLQNLYFIFKALAKRVEGYKSESEVERAVMGRYFYFQLANVYVSVTSGSILDALRDILENPSSALSLLGQALPGVAVYFTKLIIEVEARGTNLLQITDDIANMVVAGLMMELCFGGRPLKFWRILCIEMFTDP 1197
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A482RUX8_9ARCH (RSN1_7TM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUX8_9ARCH) HSP 1 Score: 119 bits (297), Expect = 1.570e-28 Identity = 66/171 (38.60%), Postives = 111/171 (64.91%), Query Frame = 1
Query: 1 KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLEL 513
+N++ V Q++ RK + N+ LA+G +FWS VV+ I + +++I++ P +KE A+ + ++ YL + ILLI++ LL F +++ EG KT SE++ A+M RYF + LANVFV +G GSI ++ +II P +LS+LG +V ++YF NL+I + TG+ +E+
Sbjct: 4 ENISIPVKQIRMRKSIANSILAIGALFWSLVVAFISAATSLESISEEIPALKEYADTEIY--TICNYYLAIGILLILLALLPFVFDFISRSYEGVKTESEIQNAIMHRYFNYQLANVFVAVGLGSIATSLNQIIDNPSAILSILGNSVASFSIYFANLMITRTFTGIPIEM 172
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A7S2NWW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWW9_9STRA) HSP 1 Score: 108 bits (270), Expect = 7.830e-25 Identity = 63/191 (32.98%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 1 KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEF-VTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLELCFGGRTLK--FWRILAAET 564
KN+ ++ V+ R+ N LA+G I WS +++IQ L+ +++++V PF+ + + +T+ + YLPV LL +I +L +W+A++ E KTYS+V+ ++++RYF++ LAN+F+T+ AGSI D++ ++ P +LG ++P V YF++ + K + GL + L G K F+R+ E+
Sbjct: 112 KNIQGNINLVKQREDAANFFLALGAILWSIPLTAIQALATAESLSRV-PFMSWLSTSSNLRLTAFINGYLPVVALLTLIMILPIIFEWVAVNYENRKTYSDVQNSILNRYFYYQLANIFITVTAGSIWDSLNDLLYSPYSAFVILGRSLPTVVGYFVSFLATKTLAGLPMVLLRLGPLGKMLFYRLCLRES 301
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: K0SU52_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SU52_THAOC) HSP 1 Score: 110 bits (274), Expect = 1.800e-24 Identity = 69/168 (41.07%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 16 HVIQVQNRKR--LVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLEL 513
HV Q +R R N LAVG I WS V+SIQ L+ VDT+A V + V S + YLPV +LL+II +L +AL+ E KT S+V+R+V+ RYF++ LAN+F+T+ AGSI +++ +I+ P +L++LG+T+P V YF+ ++ K++ GL + L
Sbjct: 576 HVNQAWSRGREFTANTLLAVGAILWSIPVASIQALATVDTLASVTGMDWIQTLHGGRVASFVNGYLPVVLLLVIIMVLPHIFYAVALYYEDRKTQSDVQRSVIGRYFYYQLANIFITVTAGSILESLNEIVEHPTNILAILGKTLPNVVGYFVAFVMTKMLCGLPIVL 743
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A7S4V0U0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0U0_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.170e-24 Identity = 59/158 (37.34%), Postives = 100/158 (63.29%), Query Frame = 1
Query: 28 VQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGL 501
+Q R L N L++G I WS ++ IQ L+ D++A++ + + + L+ YLPV LL +I +L +W+A+H EG KT S+V+ ++M RYF++ LAN+++T+ AGSI +++ I+ +P +L +LG +P V YFI+L+I K++ GL
Sbjct: 265 IQGRAFLANVLLSLGAILWSIPLAMIQALATADSLARIPGMEWILSFDEGTLRGLINGYLPVVALLSLIVILPIIFQWVAVHYEGRKTLSDVQASIMGRYFYYQLANIYITVTAGSIYNSLADILDRPSAILEILGTKLPTVVGYFISLLITKILAGL 422
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A7S4VLS2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VLS2_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.580e-23 Identity = 65/171 (38.01%), Postives = 109/171 (63.74%), Query Frame = 1
Query: 37 RKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQV--FPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGL-MLELCFG--GRTL 534
R+ N L VG I WS V++IQ + D++A + F ++ + + EF S + YLPV LL II +L +W+A+H E KTYS+VE+++++RYF++ LAN+++T+ AGSI ++ I+ P + ++LG+++P V YF+ L++ K++ GL ++ L FG GR L
Sbjct: 742 REWTANVALGVGAILWSVPVAAIQAWATADSLASIPGFEWIM-SFDGGEF-ASFVNGYLPVVALLCIILILPIIFEWIAVHYENRKTYSDVEKSILTRYFYYQLANIYITVTAGSIWTSLSDILDHPGNVFAILGKSLPTVVGYFVALLLTKILAGLPLVMLRFGALGRIL 910
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: A0A7S3MIQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIQ7_9STRA) HSP 1 Score: 105 bits (263), Expect = 5.450e-23 Identity = 56/171 (32.75%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 1 KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLEL 513
+NV+ + Q+ R+ + + L VG +FWS VV++I +S + +I++V P +++ +E + + YL + +L LL F ++A + EG KT +++ ++M+RYF++ LAN++V++G GS+ ++ +++A P LL++LG VP + YF L+IVK +T + +E+
Sbjct: 588 ENVSIPLSQINIRRSIADGTLIVGALFWSIVVTAISAVSNMQSISRVIPSLQQYSETQLY--QIANNYLALLLLXXXXALLPFVFDFIARYYEGLKTEIDIQNSIMTRYFYYQLANIYVSVGLGSVASSLHEVLANPANLLTILGAAVPTFSTYFACLVIVKTMTAVPIEM 756
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI) HSP 1 Score: 105 bits (261), Expect = 9.940e-23 Identity = 59/159 (37.11%), Postives = 101/159 (63.52%), Query Frame = 1
Query: 61 LAVGIIFWSAVVSSIQTLSKVDTIAQVFPFVKEAAENHEFVTSLLEAYLPVAILLIIINLLYFALKWMALHLEGYKTYSEVERAVMSRYFFFHLANVFVTIGAGSIKDAIEKIIAQPKMLLSVLGETVPLVAVYFINLIIVKVVTGLMLELCFGGRTLK 537
+A G IFWS V IQ + + ++FP + + + F+ ++ YLPV +LL LL F + +A E K++SEV++++++RYF + +AN++VT+ +GSI A+++I+ P +L++LGET P VAVYF+++I+VK+ GL EL G ++
Sbjct: 596 VAAGAIFWSFPVLLIQLWASYSELEKIFPVLADL-DPDSFLYYVIAGYLPVVLLLXXXXLLPFLFQALAYRYERRKSHSEVQQSILTRYFTYQVANIYVTVASGSIISALQEILDDPASVLNILGETFPAVAVYFLDVIVVKIFVGLPFELLRGWPLIR 753 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13481.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13481.2826.1 >prot_H-canaliculatus_F_contig13481.2826.1 ID=prot_H-canaliculatus_F_contig13481.2826.1|Name=mRNA_H-canaliculatus_F_contig13481.2826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp KNVTNHVIQVQNRKRLVNAGLAVGIIFWSAVVSSIQTLSKVDTIAQVFPFback to top mRNA from alignment at H-canaliculatus_F_contig13481:148..2526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13481.2826.1 ID=mRNA_H-canaliculatus_F_contig13481.2826.1|Name=mRNA_H-canaliculatus_F_contig13481.2826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2379bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13481:148..2526- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13481:148..2526- >mRNA_H-canaliculatus_F_contig13481.2826.1 ID=mRNA_H-canaliculatus_F_contig13481.2826.1|Name=mRNA_H-canaliculatus_F_contig13481.2826.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13481:148..2526- (Hapterophycus canaliculatus Oshoro5f female)back to top |