mRNA_H-canaliculatus_F_contig13480.2825.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13480.2825.1
Unique NamemRNA_H-canaliculatus_F_contig13480.2825.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: D8LDH9_ECTSI (Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 9.270e-31
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    4 ASASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            A+ SKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKM  K +
Sbjct:    2 AATSKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMSEKDS 94
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A5D6XLL9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLL9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.840e-27
Identity = 79/89 (88.76%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:   16 KRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            K   +KSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM  K +
Sbjct:   14 KSNASKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDS 102
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A813A1S0_SYMMI (Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813A1S0_SYMMI)

HSP 1 Score: 104 bits (259), Expect = 2.210e-26
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:   10 ASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            A + GG KSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXX FLEMMT+KM  + +
Sbjct:    3 AKRAGGGKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXXFLEMMTAKMSERDS 93
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A1V9ZCQ4_9STRA (Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID=A0A1V9ZCQ4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.760e-26
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:   28 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM  K +
Sbjct:   16 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDS 100
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A024GNG8_9STRA (Uncharacterized protein n=21 Tax=Stramenopiles TaxID=33634 RepID=A0A024GNG8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.150e-26
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:   16 KRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            K   AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMT+KM  K +
Sbjct:   15 KGNAAKTKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTTKMSEKDS 103
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A3R7A958_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7A958_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.840e-25
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:   28 AKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM  K +
Sbjct:  164 AKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDS 248
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A5A8D4X3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4X3_CAFRO)

HSP 1 Score: 99.0 bits (245), Expect = 3.110e-24
Identity = 75/91 (82.42%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:   10 ASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            AS RG  K  KFELTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK   XXXXXXXXXXXXXXXXXXX FL+MMT+KM  K +
Sbjct:    6 ASARGARKGGKFELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKAEXXXXXXXXXXXXXXXXXXXXFLDMMTAKMSEKDS 96
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A3R6VX05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VX05_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.920e-24
Identity = 80/93 (86.02%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    4 ASASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            A A+    AK+KKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXX  EFLEMMTSKM  K +
Sbjct:  457 AGAATGAAAKNKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXFTEFLEMMTSKMSEKDS 549
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A7S3D058_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D058_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 5.370e-24
Identity = 81/95 (85.26%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    4 ASASKRGGAKSK---KFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKS 279
            AS S+R  A+ K   K ELTEEQ+QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMT+KMV  S
Sbjct:    2 ASLSRRAAARRKAGGKQELTEEQRQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTAKMVRLS 96
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Match: A0A7S4IDL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IDL9_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 7.710e-24
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:   10 ASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXXEFLEMMTSKMVSKSA 282
            A+ RG  K  K ELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXX EFL+MMT+KM  K +
Sbjct:    8 AAGRGKGKGGKPELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKXXXXXXXXXXXXXXXXXXXXXDEFLQMMTAKMSEKDS 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13480.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH9_ECTSI9.270e-3193.55Centrin n=4 Tax=Eukaryota TaxID=2759 RepID=D8LDH9_... [more]
A0A5D6XLL9_9STRA6.840e-2788.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A813A1S0_SYMMI2.210e-2687.91Calmodulin n=15 Tax=Sar TaxID=2698737 RepID=A0A813... [more]
A0A1V9ZCQ4_9STRA3.760e-2691.76Caltractin n=6 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A024GNG8_9STRA8.150e-2687.64Uncharacterized protein n=21 Tax=Stramenopiles Tax... [more]
A0A3R7A958_9STRA8.840e-2591.76Uncharacterized protein n=4 Tax=Aphanomyces TaxID=... [more]
A0A5A8D4X3_CAFRO3.110e-2482.42Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A3R6VX05_9STRA3.920e-2486.02Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3D058_9EUKA5.370e-2485.26Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S4IDL9_9EUKA7.710e-2484.62Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13480contigH-canaliculatus_F_contig13480:130..2737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog112098.XP_008618385.1
Preferred nameCETN1
KEGG koko:K10840,ko:K16465
KEGG Pathwayko03420,map03420
GOsGO:0000003,GO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0000922,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031683,GO:0031974,GO:0031981,GO:0032391,GO:0032465,GO:0032501,GO:0032504,GO:0032795,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0035869,GO:0036064,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0044877,GO:0046483,GO:0046872,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097458,GO:0097711,GO:0097730,GO:0097731,GO:0097733,GO:0098534,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncentrin
Ec32 orthologEc-15_000530.1
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929089.458922-CDS-H-canaliculatus_F_contig13480:129..2411622929089.458922-CDS-H-canaliculatus_F_contig13480:129..241Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13480 130..241 +
1696845675.3182092-CDS-H-canaliculatus_F_contig13480:129..2411696845675.3182092-CDS-H-canaliculatus_F_contig13480:129..241Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13480 130..241 +
1622929089.4756606-CDS-H-canaliculatus_F_contig13480:2558..27371622929089.4756606-CDS-H-canaliculatus_F_contig13480:2558..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13480 2559..2737 +
1696845675.3312182-CDS-H-canaliculatus_F_contig13480:2558..27371696845675.3312182-CDS-H-canaliculatus_F_contig13480:2558..2737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13480 2559..2737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13480.2825.1prot_H-canaliculatus_F_contig13480.2825.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13480 130..2737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13480.2825.1

>prot_H-canaliculatus_F_contig13480.2825.1 ID=prot_H-canaliculatus_F_contig13480.2825.1|Name=mRNA_H-canaliculatus_F_contig13480.2825.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
QASASKRGGAKSKKFELTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMR
ALGFEPKKEEIKKMISDIDKDGSGTIDFQEFLEMMTSKMVSKSASR*
back to top

mRNA from alignment at H-canaliculatus_F_contig13480:130..2737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13480.2825.1 ID=mRNA_H-canaliculatus_F_contig13480.2825.1|Name=mRNA_H-canaliculatus_F_contig13480.2825.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2608bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13480:130..2737+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGTCTGCATCGAAACGCGGAGGCGCGAAGTCGAAGAAGTTCGAGCT
GACGGAGGAGCAAAAGCAGGAGATCAGAGAAGCTTTTGACCTCTTCGACA
CGGATGGATCAGGTAGGTTTCGGCGAAGCAGCAGGTAGGATGTTGCCGCT
GTTGTTGCTGCTGGTGCTGGTGCTCGCTGCTGCTTTTGTGCCGCTAGTGT
CGCCGGGGCTGCTTTTCATCCCAGGGAGCCTGGCATCACGCCCCTACGGG
GAGCATCGTCCAAGCAACGACGAAGTGGAAGTGGGTACAAAGTGCTAGCC
GTGTGCCATGTCAGACAGCAGTATCGGACGACTCGGTTTTTCTCAACCTA
CCAACAATCGATTGCTCAATCCAATGAATCACCACATCTTGTTCATTTTA
TAGATCGCTCTGGGTAGGCGCTCCCAGTTTATTTTTGGATTGAACGTAGA
TAGTGGACGCTCTCGGAGATGTCATGGGCCGGGGCCCCACCGTGCCATAC
GGAAGATTCCCGGAAAGTTCCTTCCTCGTTTGGTCATGCAGCATTAGAGA
TTTGCCATACGCAGCAGTAAATATACCCGTTGTGACATACGCTACACTGA
GCGACGCCCTTATCCGCGCCAGTGGGGTCAGTCTGCCTGAAGGCCTGTTG
ATGCAAGACGTTAGCGTTCTTGTCGTTGTACCCGGGCACCTCTTGAATGT
CCTCGTCCGTCGATTGCCGCCGGTTGCGCAACGAACCATATCCTGTTCCA
GCTTCAGAACAGACAACGACAGGGCAACTCACGCCTCAAGCCCTGGGGCA
TCAAACGAACCAAAACGTGTTGAGATCTGAATAGTAAAGTCCTTACAAGG
GAATGCCGGGCGTAGAGAATTCGCACAATGTTGTGTGCGTGTGAGCTGCA
AAGCCTCCGAGTGCCCCCTTGTTTCGACATCGTCATCTGTGCGGAGGCGT
CGATGGAAATGGAGGGGGGGGGCGATTATGGTGGATGCTGCCCTGGTTTC
TCTTAAAGCGTTTTGTTTGTCCGCAAGCTTTTCCAGTTTCGTGTGTAGGG
CCGTCAACACAGCAAACCGCTGCGTGCGGCAAGAGAGCACACAGAGGGAG
CTCGTTGTCCGTGCTCAACACACATACAAGCGCGGGGCGTGAAATGTCCA
CGTTAGCACAAGGGGGCGATGCGAGGTGTGGGAACAGAGTGGGACGTGTA
GTGTGGACGTCTCGGCCGAGGCGCTGAAATGTCGTGTGCGTGTGTGATTG
TGTGTGCGTGCCTGTTTTGTGTGTGTGTGCATGTGTGTGTGCGTGCCTGT
TTTGTGTGTGTGTGTGTGTGCATATGTGTGTGCGTGTGCGTGTGCGTGTG
CGTGTGCGTGTTTGTCTTTATGTTTGTGAGTGCGTGTTTGTCTCGCCTCA
TTCTTTTGATGAAATTCGCGGAATGCACCAAGCCTGAGGGAATCGAGTTT
TGCCCCCAAACAAGCCCAGCCCTTCCTCAGCACCTGCCAAGGCCTCACGC
GGCAGGATGTGCCTGTAGGCCTGAATGAATTTTGGAGCGGGCGTGGTGCT
GTATAGGGTTTGTTGCCCAGCGGTGCGGTGAGATGTCTCCACGGCGTGTT
CGGAAGATAACAGATGAGAAGCACGCTCGCCTCTCGCCCTGTCTCTAGCG
CATGGCGGAGTTCTATTCATACACACACGTGTCTCAATCGACATCAAACT
GATTGACAGCTGTAGACAAGTGTCTCTCACGATGGCGCACCAGCTACTGG
GGTTGCAGCTTGTTTCCGTGGCGAGATTCGACCGCGGTGTTTTGCCCCAG
CATCCCTTCCGGTGTAGAGTAACCGAGCTTTGAAAAGCGCTAGAGGGTGT
AGTATATTCCGCGACCTACCGAATGAGAGATGCGTGTGTAGTAAAATGCC
CCTCTCTTCTCCATAAGTGCGAGGCTGAGAGTAACGCTTGGTCGACAGGT
GCTACTATGGTCTCAACGGTGACCGTCCGAAGGACACCTCGATTGAATCA
AAATTGCGGAGGCTGGGGGCTAAAATACGAGTTCGGACGCCATGCCACAC
AAATTTCTGTGCCAACTTTTCTACAGCAAGGTTTCTGTGCTATCAATAAG
ATCCCTACCAAAAGTCTTGAATAAGTTCTTTTGAAGTCGCGACAGAAACC
AATCGGAAAAATCGGGAAAAGATAGGAAAACTTTCAATTTTACTTTTTTT
TTTTCCTGCAGCGAGGGGTCCAAGCTCAACATGAAACCGCAGACCACTCC
CCTTTCTGCGATCGCTTTCTATTTGCCCTGTCCCATCTAACATGGACGAG
AATCGGCATCGAAATCGGCATCCGGCTGAGAGAAACGAAACACGAAGGGA
CTGCCCCAGCTTTGAGTGCCACTAGGTTTCATTTCTGCAATTTCTTCTTT
CTTGCCCCTGGTACGATTTTCTGTCGTAGGCACGATCGACGCGAAGGAGC
TGAAGGTGGCCATGCGAGCGCTGGGCTTCGAGCCCAAGAAGGAGGAGATC
AAGAAGATGATCAGCGACATTGACAAGGATGGGTCGGGCACGATCGACTT
CCAGGAATTTTTGGAGATGATGACGTCCAAGATGGTGAGTAAGTCAGCGA
GTAGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13480:130..2737+

>mRNA_H-canaliculatus_F_contig13480.2825.1 ID=mRNA_H-canaliculatus_F_contig13480.2825.1|Name=mRNA_H-canaliculatus_F_contig13480.2825.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13480:130..2737+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGTCTGCATCGAAACGCGGAGGCGCGAAGTCGAAGAAGTTCGAGCT
GACGGAGGAGCAAAAGCAGGAGATCAGAGAAGCTTTTGACCTCTTCGACA
CGGATGGATCAGCAGGCGTCTGCATCGAAACGCGGAGGCGCGAAGTCGAA
GAAGTTCGAGCTGACGGAGGAGCAAAAGCAGGAGATCAGAGAAGCTTTTG
ACCTCTTCGACACGGATGGATCAGGCACGATCGACGCGAAGGAGCTGAAG
GTGGCCATGCGAGCGCTGGGCTTCGAGCCCAAGAAGGAGGAGATCAAGAA
GATGATCAGCGACATTGACAAGGATGGGTCGGGCACGATCGACTTCCAGG
AATTTTTGGAGATGATGACGTCCAAGATGGTGAGTAAGTCAGCGAGTAGG
TGAGCACGATCGACGCGAAGGAGCTGAAGGTGGCCATGCGAGCGCTGGGC
TTCGAGCCCAAGAAGGAGGAGATCAAGAAGATGATCAGCGACATTGACAA
GGATGGGTCGGGCACGATCGACTTCCAGGAATTTTTGGAGATGATGACGT
CCAAGATGGTGAGTAAGTCAGCGAGTAGGTGA
back to top