mRNA_H-canaliculatus_F_contig13478.2823.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13478.2823.1
Unique NamemRNA_H-canaliculatus_F_contig13478.2823.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Match: A0A6H5K771_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K771_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.490e-17
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 VLRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARLIPAVL 138
            VLRGGD AELKAVKRVVWLAVNVAYNLRLEVSYLNDRRA L+P++L
Sbjct:    2 VLRGGDTAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRACLVPSLL 47
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BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.620e-16
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 VLRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARLIPAVL 138
            VLRGGD AELKAVKRVVWLAV VAYNLRLEVSYLNDRRA L+P++L
Sbjct:  698 VLRGGDTAELKAVKRVVWLAVKVAYNLRLEVSYLNDRRACLVPSLL 743
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BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Match: A0A7S2CEE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CEE6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.040e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 VLRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARLIPA 132
            +LRG D+  L+A K++V  A+NVAYNLRLE SYLNDR +R  PA
Sbjct:   66 ILRGADKKTLRAAKQIVRFAINVAYNLRLEQSYLNDRCSRPGPA 109
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BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Match: A0A7S2U7Q0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7Q0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.190e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 VLRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARLIP 129
            VLRG     LK +KRV+   +NVAYNL+LE SYL DR ARL P
Sbjct:   85 VLRGASRPILKQIKRVLRFLINVAYNLKLETSYLRDRCARLPP 127
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BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Match: A0A7S1V5K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5K4_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.800e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    4 LRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARL 123
            LRGG +A LK VK+V+   + VAYNL+LE  YL +R A+L
Sbjct:  147 LRGGSQAALKQVKKVLGFIIKVAYNLKLETCYLRERCAKL 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13478.2823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K771_9PHAE2.490e-1789.13PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3Z3_ECTSI1.620e-1686.961-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S2CEE6_9STRA2.040e-861.36Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2U7Q0_9STRA1.190e-660.47Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1V5K4_9STRA7.800e-555.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13478contigH-canaliculatus_F_contig13478:2382..2519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3e-13
Seed eggNOG ortholog2880.D7G3Z3
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0230@2759
EC2.7.1.150
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.9014754-CDS-H-canaliculatus_F_contig13478:2381..25191622929087.9014754-CDS-H-canaliculatus_F_contig13478:2381..2519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13478 2382..2519 -
1696845674.9080076-CDS-H-canaliculatus_F_contig13478:2381..25191696845674.9080076-CDS-H-canaliculatus_F_contig13478:2381..2519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13478 2382..2519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13478.2823.1prot_H-canaliculatus_F_contig13478.2823.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13478 2382..2519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13478.2823.1

>prot_H-canaliculatus_F_contig13478.2823.1 ID=prot_H-canaliculatus_F_contig13478.2823.1|Name=mRNA_H-canaliculatus_F_contig13478.2823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=46bp
VLRGGDEAELKAVKRVVWLAVNVAYNLRLEVSYLNDRRARLIPAVL
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mRNA from alignment at H-canaliculatus_F_contig13478:2382..2519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13478.2823.1 ID=mRNA_H-canaliculatus_F_contig13478.2823.1|Name=mRNA_H-canaliculatus_F_contig13478.2823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13478:2382..2519- (Hapterophycus canaliculatus Oshoro5f female)
GTGCTGAGAGGCGGGGACGAGGCCGAGCTCAAGGCGGTCAAGCGCGTCGT
CTGGCTGGCGGTGAACGTGGCCTACAACCTCCGCCTGGAGGTGTCCTACC
TGAACGACCGCCGGGCGCGGCTGATCCCGGCGGTCCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13478:2382..2519-

>mRNA_H-canaliculatus_F_contig13478.2823.1 ID=mRNA_H-canaliculatus_F_contig13478.2823.1|Name=mRNA_H-canaliculatus_F_contig13478.2823.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13478:2382..2519- (Hapterophycus canaliculatus Oshoro5f female)
GTGCTGAGAGGCGGGGACGAGGCCGAGCTCAAGGCGGTCAAGCGCGTCGT
CTGGCTGGCGGTGAACGTGGCCTACAACCTCCGCCTGGAGGTGTCCTACC
TGAACGACCGCCGGGCGCGGCTGATCCCGGCGGTCCTCGTGCTGAGAGGC
GGGGACGAGGCCGAGCTCAAGGCGGTCAAGCGCGTCGTCTGGCTGGCGGT
GAACGTGGCCTACAACCTCCGCCTGGAGGTGTCCTACCTGAACGACCGCC
GGGCGCGGCTGATCCCGGCGGTCCTC
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