mRNA_H-canaliculatus_F_contig1347.2819.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1347.2819.1
Unique NamemRNA_H-canaliculatus_F_contig1347.2819.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1347.2819.1 vs. uniprot
Match: D8LC60_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC60_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 4.840e-58
Identity = 109/179 (60.89%), Postives = 128/179 (71.51%), Query Frame = 1 
Query:    1 QFEDTETVAGFKTRVFGHEIGEDQKCRLIAGGKELKDSQQMGFYRLPEDSCLHVMISRKVSSGFAARASPSVASPGASXXXXXXXSRTVSGEAGSAILCALTLGMVIAGWTLFVVFPGLFSSEAISLLVVLTLLQLAATLPLLKKALSVALGACWWR----RPSGDSRISSRVPGRRRQ 525
            QF+D ETVA FKTRVFG  IGE ++CRLIA GKEL+DS +MG YR+ E SC+HVMIS++ S   A R +P  A+   S       SR V   AGSAILCALTLGMV+A WT+++VFP LFS  A  LL++LTLLQLAATLP+LK+ALS ALGACWWR    RPS        VPGRRRQ
Sbjct:   21 QFDDAETVADFKTRVFGDVIGEGKRCRLIASGKELQDSHKMGSYRIQEGSCMHVMISQRGSVAGAERGTPCAAAVPPSAAASTSSSRGVGRGAGSAILCALTLGMVMAAWTVYMVFPELFSCAATCLLLLLTLLQLAATLPILKQALSAALGACWWRPWVRRPSS-------VPGRRRQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1347.2819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC60_ECTSI4.840e-5860.89Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1347contigH-canaliculatus_F_contig1347:13692..15315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-20_004560.1
Exons4
Model size528
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1347.2819.1prot_H-canaliculatus_F_contig1347.2819.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1347 13692..15315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929087.3161187-CDS-H-canaliculatus_F_contig1347:13691..137661622929087.3161187-CDS-H-canaliculatus_F_contig1347:13691..13766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 13692..13766 +
1696845674.6558423-CDS-H-canaliculatus_F_contig1347:13691..137661696845674.6558423-CDS-H-canaliculatus_F_contig1347:13691..13766Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 13692..13766 +
1622929087.3295481-CDS-H-canaliculatus_F_contig1347:14039..141931622929087.3295481-CDS-H-canaliculatus_F_contig1347:14039..14193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 14040..14193 +
1696845674.6652756-CDS-H-canaliculatus_F_contig1347:14039..141931696845674.6652756-CDS-H-canaliculatus_F_contig1347:14039..14193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 14040..14193 +
1622929087.345448-CDS-H-canaliculatus_F_contig1347:14858..149381622929087.345448-CDS-H-canaliculatus_F_contig1347:14858..14938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 14859..14938 +
1696845674.6745756-CDS-H-canaliculatus_F_contig1347:14858..149381696845674.6745756-CDS-H-canaliculatus_F_contig1347:14858..14938Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 14859..14938 +
1622929087.3677862-CDS-H-canaliculatus_F_contig1347:15096..153151622929087.3677862-CDS-H-canaliculatus_F_contig1347:15096..15315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 15097..15315 +
1696845674.684854-CDS-H-canaliculatus_F_contig1347:15096..153151696845674.684854-CDS-H-canaliculatus_F_contig1347:15096..15315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1347 15097..15315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1347.2819.1

>prot_H-canaliculatus_F_contig1347.2819.1 ID=prot_H-canaliculatus_F_contig1347.2819.1|Name=mRNA_H-canaliculatus_F_contig1347.2819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=176bp
QFEDTETVAGFKTRVFGHEIGEDQKCRLIAGGKELKDSQQMGFYRLPEDS
CLHVMISRKVSSGFAARASPSVASPGASASAAAASSRTVSGEAGSAILCA
LTLGMVIAGWTLFVVFPGLFSSEAISLLVVLTLLQLAATLPLLKKALSVA
LGACWWRRPSGDSRISSRVPGRRRQ*
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mRNA from alignment at H-canaliculatus_F_contig1347:13692..15315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1347.2819.1 ID=mRNA_H-canaliculatus_F_contig1347.2819.1|Name=mRNA_H-canaliculatus_F_contig1347.2819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1347:13692..15315+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTTCGAAGATACGGAAACCGTGGCGGGGTTCAAGACCCGTGTATTTGG
CCATGAGATTGGAGAAGACCAAAAGGTACGGAAATAGAAGCGCAGGGGCT
ACACCATTCTGGCTGATCACGATCCTGCGGGTCCCATGAAGACGATTACT
GCGGTGTGGAATGCCCAGTTTGAAACCTTCTCTCAGCTTGGTCCGAAAAC
GTGCTCGTCAAATGATATGTACAGCAGATACCTGGATTACTCTCGTTTCG
TTTCATGCGCGGGCTTCCTCGTGCCTTCTACCCCCTCCCTTTGCTCTTGA
CTCAGCACCACCTTCGTGTCTTTCGCCTACAACGCCCGTTTGTGGCAGTG
CCGGCTCATCGCAGGTGGCAAGGAGCTCAAAGACTCGCAGCAGATGGGAT
TTTACCGTCTGCCAGAGGATAGCTGTCTCCACGTGATGATCAGCAGGAAG
GTCTCGTCTGGATTCGCCGCCCGTGCGTCCCCAAGCGTTGCTTCCCCTGG
AGGTAGGCGCTTATCGCAGCACCAATGTTGTGTGCGCTCAGGGGTTGAAG
GTTGCCTTTGAGGAGGGTTCAAGAAGAGACGTGGCTCGTGCGTTGCTGCT
GTGGCAGCTGCGAGGGTGTCCGCTCCCTAAATGCACTTTATTTTCGGAGG
GTAAGGGGGCATGTCTTGTCTTGTAGGTCAACTAGTCATCGATATCGCAA
GCTACTTGTCGGCCTTTTCTAAGGGGGGGCTGGGTGACGTATCAACGTAC
TTTTACTCAGCAACCCTGCAACGCTTGTGTAGCTTACAACCACTGTATCT
TCACTCAAACACCGATCAGCTCGTTGAAAGCATGACAACATGACAACATG
ACAGCATCACAACGTGACAGCATCACAACATGACAGCATAACAACATGAC
AGCATCACAACATGACAGCATCACAACACGACAGCTTCGTTCGTTAGCCA
GGGAAAAGAGCGTGTGGGAAGTCGGCCGTTTCACTTGTTGGCCGCGTTGG
ATGCATTTCTACAGTCATGGGTTACGAGGTAGGAGGTCTTCAACACCCCC
TGTCTACCATGTGTACTCCCCCTGCTAGCTCAACCACGCGTCTTCCTGGT
CGATCCTTCCTGTCGGTCCGCGTCATCCCTCGATTTTAATCAGCAACGTC
AGCGACACCAACACCAGCATCAGCGTCGGCAGCAGCAGCATCATCGAGGA
CTGTTTCTGGAGAAGCTGGTTCTGCAATCCTGTGCGCTCTCACCCTGGTG
CGTGCCCGATTTCATGTGTCACACGTGCGCCAAGGATCTGAGTGCGTAGA
GTGCGAAGTGCGCGCCCTCTTCCCTCGTAGTTGCCCGAAGTTGAGGGTGC
AACCGACTGATCATTGTTTCGTGCGCACTTGCGACCTGTGCGTGCCATCC
CTCAGGGCATGGTGATCGCCGGCTGGACTCTCTTCGTCGTATTCCCAGGG
CTGTTTTCGTCGGAGGCGATCAGTCTGCTAGTGGTGCTCACCCTGCTCCA
GCTGGCGGCCACGCTTCCCCTCCTCAAGAAGGCCTTGTCTGTGGCTCTTG
GAGCGTGTTGGTGGAGGAGGCCGTCCGGAGATTCAAGGATTTCCTCCCGT
GTCCCTGGTAGACGAAGGCAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1347:13692..15315+

>mRNA_H-canaliculatus_F_contig1347.2819.1 ID=mRNA_H-canaliculatus_F_contig1347.2819.1|Name=mRNA_H-canaliculatus_F_contig1347.2819.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1056bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1347:13692..15315+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTTCGAAGATACGGAAACCGTGGCGGGGTTCAAGACCCGTGTATTTGG
CCATGAGATTGGAGAAGACCAAAAGCAGTTCGAAGATACGGAAACCGTGG
CGGGGTTCAAGACCCGTGTATTTGGCCATGAGATTGGAGAAGACCAAAAG
TGCCGGCTCATCGCAGGTGGCAAGGAGCTCAAAGACTCGCAGCAGATGGG
ATTTTACCGTCTGCCAGAGGATAGCTGTCTCCACGTGATGATCAGCAGGA
AGGTCTCGTCTGGATTCGCCGCCCGTGCGTCCCCAAGCGTTGCTTCCCCT
GGAGTGCCGGCTCATCGCAGGTGGCAAGGAGCTCAAAGACTCGCAGCAGA
TGGGATTTTACCGTCTGCCAGAGGATAGCTGTCTCCACGTGATGATCAGC
AGGAAGGTCTCGTCTGGATTCGCCGCCCGTGCGTCCCCAAGCGTTGCTTC
CCCTGGAGCATCAGCGTCGGCAGCAGCAGCATCATCGAGGACTGTTTCTG
GAGAAGCTGGTTCTGCAATCCTGTGCGCTCTCACCCTGCATCAGCGTCGG
CAGCAGCAGCATCATCGAGGACTGTTTCTGGAGAAGCTGGTTCTGCAATC
CTGTGCGCTCTCACCCTGGGCATGGTGATCGCCGGCTGGACTCTCTTCGT
CGTATTCCCAGGGCTGTTTTCGTCGGAGGCGATCAGTCTGCTAGTGGTGC
TCACCCTGCTCCAGCTGGCGGCCACGCTTCCCCTCCTCAAGAAGGCCTTG
TCTGTGGCTCTTGGAGCGTGTTGGTGGAGGAGGCCGTCCGGAGATTCAAG
GATTTCCTCCCGTGTCCCTGGTAGACGAAGGCAGTGAGGCATGGTGATCG
CCGGCTGGACTCTCTTCGTCGTATTCCCAGGGCTGTTTTCGTCGGAGGCG
ATCAGTCTGCTAGTGGTGCTCACCCTGCTCCAGCTGGCGGCCACGCTTCC
CCTCCTCAAGAAGGCCTTGTCTGTGGCTCTTGGAGCGTGTTGGTGGAGGA
GGCCGTCCGGAGATTCAAGGATTTCCTCCCGTGTCCCTGGTAGACGAAGG
CAGTGA
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