mRNA_H-canaliculatus_F_contig13455.2807.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13455.2807.1
Unique NamemRNA_H-canaliculatus_F_contig13455.2807.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13455.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13455contigH-canaliculatus_F_contig13455:2021..2619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.3954096-CDS-H-canaliculatus_F_contig13455:2020..22151622929085.3954096-CDS-H-canaliculatus_F_contig13455:2020..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13455 2021..2215 +
1696845673.808295-CDS-H-canaliculatus_F_contig13455:2020..22151696845673.808295-CDS-H-canaliculatus_F_contig13455:2020..2215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13455 2021..2215 +
1622929085.4135091-CDS-H-canaliculatus_F_contig13455:2325..26191622929085.4135091-CDS-H-canaliculatus_F_contig13455:2325..2619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13455 2326..2619 +
1696845673.8183289-CDS-H-canaliculatus_F_contig13455:2325..26191696845673.8183289-CDS-H-canaliculatus_F_contig13455:2325..2619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13455 2326..2619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13455.2807.1prot_H-canaliculatus_F_contig13455.2807.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13455 2021..2619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13455.2807.1

>prot_H-canaliculatus_F_contig13455.2807.1 ID=prot_H-canaliculatus_F_contig13455.2807.1|Name=mRNA_H-canaliculatus_F_contig13455.2807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=163bp
PSGRPRGDERAADLGGTGGLFCGELQKEGLLLCWVVVVASLGVHFGVRAC
RCTLLEPRRAVSAVSEIAPKRHRSLRLGLEVFARSMLYLHSLLNIPPRLR
LDSSRHPLTCIAGTETGILIAAISRPDTKAHALKSVALSIRPSVFPPLLF
FPALSLAPSVLPP
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mRNA from alignment at H-canaliculatus_F_contig13455:2021..2619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13455.2807.1 ID=mRNA_H-canaliculatus_F_contig13455.2807.1|Name=mRNA_H-canaliculatus_F_contig13455.2807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=599bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13455:2021..2619+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTCAGGGCGGCCTCGAGGAGATGAGCGTGCTGCAGATCTTGGAGGGAC
GGGTGGGTTGTTCTGCGGGGAGTTGCAAAAAGAGGGCTTATTGCTCTGTT
GGGTGGTTGTGGTTGCGAGCCTGGGGGTTCACTTTGGAGTTCGTGCGTGC
CGTTGTACTTTGCTCGAGCCTCGGCGAGCAGTTTCTGCGGTTTCCACGAT
GCCACCGATGCTCCGCGTGTTGTGGGCATCGTGCATCTTCCGTCCGCTCC
ACCCACCGCGCCTTCCCCCCCCCCCCCGGTGATTTCCCTCGCACGTTTCT
TGTGTGAAATCGCCCCGAAACGTCATCGTTCCCTTCGTCTTGGTCTGGAA
GTCTTCGCACGATCCATGCTGTATCTGCATTCACTGCTCAACATACCTCC
TCGGCTGCGTCTCGACTCCAGCCGTCACCCACTCACTTGCATCGCGGGAA
CTGAAACAGGCATACTCATCGCTGCGATAAGCCGCCCAGATACCAAAGCC
CATGCCCTCAAGTCTGTCGCCCTGTCCATCCGTCCTTCTGTGTTTCCCCC
GCTTTTGTTTTTTCCTGCTTTGTCGTTGGCTCCCTCTGTCCTGCCCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13455:2021..2619+

>mRNA_H-canaliculatus_F_contig13455.2807.1 ID=mRNA_H-canaliculatus_F_contig13455.2807.1|Name=mRNA_H-canaliculatus_F_contig13455.2807.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=978bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13455:2021..2619+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTCAGGGCGGCCTCGAGGAGATGAGCGTGCTGCAGATCTTGGAGGGAC
GGGTGGGTTGTTCTGCGGGGAGTTGCAAAAAGAGGGCTTATTGCTCTGTT
GGGTGGTTGTGGTTGCGAGCCTGGGGGTTCACTTTGGAGTTCGTGCGTGC
CGTTGTACTTTGCTCGAGCCTCGGCGAGCAGTTTCTGCGGTTTCCCCCTC
AGGGCGGCCTCGAGGAGATGAGCGTGCTGCAGATCTTGGAGGGACGGGTG
GGTTGTTCTGCGGGGAGTTGCAAAAAGAGGGCTTATTGCTCTGTTGGGTG
GTTGTGGTTGCGAGCCTGGGGGTTCACTTTGGAGTTCGTGCGTGCCGTTG
TACTTTGCTCGAGCCTCGGCGAGCAGTTTCTGCGGTTTCCGAAATCGCCC
CGAAACGTCATCGTTCCCTTCGTCTTGGTCTGGAAGTCTTCGCACGATCC
ATGCTGTATCTGCATTCACTGCTCAACATACCTCCTCGGCTGCGTCTCGA
CTCCAGCCGTCACCCACTCACTTGCATCGCGGGAACTGAAACAGGCATAC
TCATCGCTGCGATAAGCCGCCCAGATACCAAAGCCCATGCCCTCAAGTCT
GTCGCCCTGTCCATCCGTCCTTCTGTGTTTCCCCCGCTTTTGTTTTTTCC
TGCTTTGTCGTTGGCTCCCTCTGTCCTGCCCCCTGAAATCGCCCCGAAAC
GTCATCGTTCCCTTCGTCTTGGTCTGGAAGTCTTCGCACGATCCATGCTG
TATCTGCATTCACTGCTCAACATACCTCCTCGGCTGCGTCTCGACTCCAG
CCGTCACCCACTCACTTGCATCGCGGGAACTGAAACAGGCATACTCATCG
CTGCGATAAGCCGCCCAGATACCAAAGCCCATGCCCTCAAGTCTGTCGCC
CTGTCCATCCGTCCTTCTGTGTTTCCCCCGCTTTTGTTTTTTCCTGCTTT
GTCGTTGGCTCCCTCTGTCCTGCCCCCT
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