mRNA_H-canaliculatus_F_contig13450.2804.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13450.2804.1
Unique NamemRNA_H-canaliculatus_F_contig13450.2804.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13450.2804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13450contigH-canaliculatus_F_contig13450:1716..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929085.3072424-CDS-H-canaliculatus_F_contig13450:1715..20601622929085.3072424-CDS-H-canaliculatus_F_contig13450:1715..2060Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13450 1716..2060 +
1696845673.7983809-CDS-H-canaliculatus_F_contig13450:1715..20601696845673.7983809-CDS-H-canaliculatus_F_contig13450:1715..2060Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13450 1716..2060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13450.2804.1prot_H-canaliculatus_F_contig13450.2804.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13450 1716..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13450.2804.1

>prot_H-canaliculatus_F_contig13450.2804.1 ID=prot_H-canaliculatus_F_contig13450.2804.1|Name=mRNA_H-canaliculatus_F_contig13450.2804.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
TCGQRGHKSRHCRLRQASGVAKRAGRSQQRLPLADTTRTTAVRPTGPHGE
RVCNVCNSSGDRRGQQQSRQAAGGKIAVTGAATLCRGRRVDGADGGTQTY
GRVAAAGCGLGVVI*
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mRNA from alignment at H-canaliculatus_F_contig13450:1716..2060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13450.2804.1 ID=mRNA_H-canaliculatus_F_contig13450.2804.1|Name=mRNA_H-canaliculatus_F_contig13450.2804.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=345bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13450:1716..2060+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTGTGGTCAGCGTGGACACAAGTCTCGTCATTGCCGATTGCGTCAAGC
GTCGGGGGTAGCGAAGCGCGCGGGTCGTAGTCAGCAGCGGTTGCCTCTAG
CGGATACGACACGTACCACTGCTGTTAGACCAACTGGACCTCATGGAGAG
AGGGTGTGCAACGTCTGCAATAGTTCCGGAGATCGGAGGGGACAGCAGCA
ATCCAGACAGGCCGCTGGTGGTAAAATCGCGGTCACCGGAGCGGCAACTC
TCTGTCGCGGCCGTAGAGTCGACGGCGCCGACGGCGGAACACAAACCTAT
GGCCGAGTAGCAGCAGCTGGGTGCGGGCTTGGTGTCGTCATCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13450:1716..2060+

>mRNA_H-canaliculatus_F_contig13450.2804.1 ID=mRNA_H-canaliculatus_F_contig13450.2804.1|Name=mRNA_H-canaliculatus_F_contig13450.2804.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13450:1716..2060+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTGTGGTCAGCGTGGACACAAGTCTCGTCATTGCCGATTGCGTCAAGC
GTCGGGGGTAGCGAAGCGCGCGGGTCGTAGTCAGCAGCGGTTGCCTCTAG
CGGATACGACACGTACCACTGCTGTTAGACCAACTGGACCTCATGGAGAG
AGGGTGTGCAACGTCTGCAATAGTTCCGGAGATCGGAGGGGACAGCAGCA
ATCCAGACAGGCCGCTGGTGGTAAAATCGCGGTCACCGGAGCGGCAACTC
TCTGTCGCGGCCGTAGAGTCGACGGCGCCGACGGCGGAACACAAACCTAT
GGCCGAGTAGCAGCAGCTGGGTGCGGGCTTGGTGTCGTCATCTGAACCTG
TGGTCAGCGTGGACACAAGTCTCGTCATTGCCGATTGCGTCAAGCGTCGG
GGGTAGCGAAGCGCGCGGGTCGTAGTCAGCAGCGGTTGCCTCTAGCGGAT
ACGACACGTACCACTGCTGTTAGACCAACTGGACCTCATGGAGAGAGGGT
GTGCAACGTCTGCAATAGTTCCGGAGATCGGAGGGGACAGCAGCAATCCA
GACAGGCCGCTGGTGGTAAAATCGCGGTCACCGGAGCGGCAACTCTCTGT
CGCGGCCGTAGAGTCGACGGCGCCGACGGCGGAACACAAACCTATGGCCG
AGTAGCAGCAGCTGGGTGCGGGCTTGGTGTCGTCATCTGA
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