mRNA_H-canaliculatus_F_contig13441.2800.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13441.2800.1
Unique NamemRNA_H-canaliculatus_F_contig13441.2800.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.920e-40
Identity = 76/100 (76.00%), Postives = 81/100 (81.00%), Query Frame = 3 
Query:    3 CKETG-NKGGAMKQVLELEEGKK-EKLWVHVSCSLWIPEVRFITEDLTPVQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGIIIR 296
            CKET  +KGGAMKQVL    GK  EKLWVHVSCSLWIPEVRF +E+L PV L  IE SRK LKCLLCG +G CVQCAGGRCL SYHPWCLIHS+RGII R
Sbjct:   61 CKETNLSKGGAMKQVLG--NGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDRGIINR 158
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 8.150e-36
Identity = 68/89 (76.40%), Postives = 72/89 (80.90%), Query Frame = 3 
Query:   33 MKQVLELEEGKK-EKLWVHVSCSLWIPEVRFITEDLTPVQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGIIIR 296
            MKQVL    GK  EKLWVHVSCSLWIPEVRF +E+L PV L  IE SRK LKCLLCG +G CVQCAGGRCL SYHPWCLIHS+RGII R
Sbjct:    1 MKQVLG--NGKNGEKLWVHVSCSLWIPEVRFTSEELNPVNLDFIEKSRKILKCLLCGQKGTCVQCAGGRCLLSYHPWCLIHSDRGIINR 87
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A5D6XI01_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI01_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.880e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 3 
Query:   24 GGAMKQVLELEEGKKEKLWVHVSCSLWIPEVRF-ITEDLTP-VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            GGA+++        +  +WVHV C  WIPE+   +T +L   V +  ++ SR+TL+CL+CG RG C+QC  GRC  ++H  C I S   +I
Sbjct:  102 GGALRRT------SQPGVWVHVLCVNWIPELSHSLTGELNQAVNIALLDRSRETLRCLVCGQRGGCIQCVSGRCARAFHVLCAIRSPSTLI 186
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A2D4CCC1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCC1_PYTIN)

HSP 1 Score: 69.7 bits (169), Expect = 8.840e-12
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 3 
Query:   24 GGAMKQVLELEEGKKEKLWVHVSCSLWIPEVRFITEDLTP--VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            GGA+++  +        +W HV C  WIPE+           + L  ++ SR++LKCL+CGLRG C+QC  GRC  S+H  C + +   +I
Sbjct:   85 GGALRRTTQ------PGVWCHVLCMQWIPELSHSLRGHLDEALDLSCLDPSRESLKCLVCGLRGGCIQCVSGRCARSFHVLCALRAPSDVI 169
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A8K1C640_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C640_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 1.210e-11
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 3 
Query:   24 GGAMKQVLELEEGKKEKLWVHVSCSLWIPEVRFITEDLT-----PVQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            GGA++Q        +  +W HV C  WIPE   ++  LT      + + +++ SR+TLKCL+CG RG C+QC  GRC  ++H  C +     +I
Sbjct:   86 GGALRQT------NQNGVWCHVLCMNWIPE---LSHSLTGAMDETLDIRTLDKSRETLKCLVCGQRGGCIQCISGRCARAFHVVCAMRCPSDVI 170
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A0P1AX52_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX52_PLAHL)

HSP 1 Score: 68.6 bits (166), Expect = 2.250e-11
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:   75 LWVHVSCSLWIPEV-RFITEDLTP-VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            +W HV C  WIPE+   +T  +   VQ+  ++ SR TL+CL+CGLRG C+QC  GRC  ++H  C   +   I+
Sbjct:   76 VWCHVLCLNWIPELYHSLTGAMDEAVQIALLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSSIL 149
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A225WAV8_9STRA (Kinesin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WAV8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.800e-11
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 3 
Query:   75 LWVHVSCSLWIPEVRFITEDLTP--VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            +W HV C  WIPE+           VQ+ +++ SR +L+C++CGLRG C+QC  GRC  ++H  C   S   ++
Sbjct:   63 VWCHVLCINWIPELYHSLAGAMDEAVQISNLDRSRSSLRCVVCGLRGGCIQCVSGRCAKAFHVLCAFRSPSSLV 136
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A484E017_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E017_BRELC)

HSP 1 Score: 67.0 bits (162), Expect = 7.820e-11
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:   75 LWVHVSCSLWIPEVRFITEDLTP--VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            +W H+ C  WIPE+           VQ+  ++ SR TL+CL+CGLRG C+QC  GRC  ++H  C   +   ++
Sbjct:   89 VWCHLLCINWIPELYHSLSGAMDEAVQISLLDKSRSTLRCLICGLRGGCIQCVSGRCAKAFHVLCAFRAPSSLL 162
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: A0A833WFP8_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WFP8_PHYIN)

HSP 1 Score: 66.2 bits (160), Expect = 1.460e-10
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 3 
Query:   75 LWVHVSCSLWIPEVRF----ITEDLTPVQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            +W HV C  WIPE+      + ++   + L+  E SR TL+C++CG+RG C+QC  GRC  ++H  C   S   ++
Sbjct:   92 VWCHVLCINWIPELYHSLTGVMDEAVKISLY--EKSRSTLRCVICGVRGGCIQCVSGRCAKAFHVVCAFRSPSSLV 165
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BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Match: K3WLS9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLS9_GLOUD)

HSP 1 Score: 66.2 bits (160), Expect = 1.460e-10
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 3 
Query:   24 GGAMKQVLELEEGKKEKLWVHVSCSLWIPEVRF-ITEDLTP-VQLHSIEASRKTLKCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGII 290
            GGA+++        +  +W HV C  WIPE+   +T ++   V +  ++ SR++L+CL+CG RG C+QC  GRC  ++H  C + S   +I
Sbjct:  101 GGALRRT------SQPGVWSHVLCINWIPELSHSLTGEMNEEVNIALLDRSRESLRCLVCGQRGGCIQCISGRCTRAFHVLCAMRSPASLI 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13441.2800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV42_ECTSI3.920e-4076.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE8.150e-3676.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XI01_9STRA1.880e-1239.56Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CCC1_PYTIN8.840e-1236.26Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1C640_PYTOL1.210e-1136.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AX52_PLAHL2.250e-1141.89Kinesin-like protein n=1 Tax=Plasmopara halstedii ... [more]
A0A225WAV8_9STRA5.800e-1137.84Kinesin n=1 Tax=Phytophthora megakarya TaxID=4795 ... [more]
A0A484E017_BRELC7.820e-1137.84Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A833WFP8_PHYIN1.460e-1036.84PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]
K3WLS9_GLOUD1.460e-1035.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13441contigH-canaliculatus_F_contig13441:679..1379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue6e-31
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13441.2800.1prot_H-canaliculatus_F_contig13441.2800.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13441 711..1379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.4240613-UTR-H-canaliculatus_F_contig13441:678..7101622929084.4240613-UTR-H-canaliculatus_F_contig13441:678..710Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13441 679..710 +
1696845673.441865-UTR-H-canaliculatus_F_contig13441:678..7101696845673.441865-UTR-H-canaliculatus_F_contig13441:678..710Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13441 679..710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.435241-CDS-H-canaliculatus_F_contig13441:710..7911622929084.435241-CDS-H-canaliculatus_F_contig13441:710..791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13441 711..791 +
1696845673.4545965-CDS-H-canaliculatus_F_contig13441:710..7911696845673.4545965-CDS-H-canaliculatus_F_contig13441:710..791Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13441 711..791 +
1622929084.4463203-CDS-H-canaliculatus_F_contig13441:1196..13791622929084.4463203-CDS-H-canaliculatus_F_contig13441:1196..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13441 1197..1379 +
1696845673.4637406-CDS-H-canaliculatus_F_contig13441:1196..13791696845673.4637406-CDS-H-canaliculatus_F_contig13441:1196..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13441 1197..1379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13441.2800.1

>prot_H-canaliculatus_F_contig13441.2800.1 ID=prot_H-canaliculatus_F_contig13441.2800.1|Name=mRNA_H-canaliculatus_F_contig13441.2800.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=88bp
MKQVLELEEGKKEKLWVHVSCSLWIPEVRFITEDLTPVQLHSIEASRKTL
KCLLCGLRGVCVQCAGGRCLHSYHPWCLIHSERGIIIR
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mRNA from alignment at H-canaliculatus_F_contig13441:679..1379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13441.2800.1 ID=mRNA_H-canaliculatus_F_contig13441.2800.1|Name=mRNA_H-canaliculatus_F_contig13441.2800.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=701bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13441:679..1379+ (Hapterophycus canaliculatus Oshoro5f female)
TATGCAAGGAGACCGGAAACAAGGGGGGCGCGATGAAGCAAGTTCTGGAG
CTTGAGGAGGGGAAGAAGGAGAAGCTGTGGGTACACGTCAGCTGCTCGTT
GTGGATACCCGAGGTGAGTGTTGGGGGGGGGGGTTCGACGCGTCGATTCA
CGTGTCAAGTGATCGTCCTCGTGCCTTCCGGCGACGTTGTTCCGCTAACA
GCTCGTTTGGGTCGACGAGCGCAGGGCGAGGGCGAGAGGAAGCGTTGTTC
CCACGTAGTGGCAGCAAGGGAGACGAGCCGAAAGTGTGGTGTCCGTGTCC
GGACGGGCGTACCTCTCGAGCGTGTTGCGCCTCAGCTCATGCGCGTGCTC
AGAGGCGTGTGTACTACTTTCGAGCCTTCATTTCCCTGTTGTGATCCCGT
TTCAGACTCTCCAAAACCACATCCGGGTTCGTTCGTTCGTTTGTTCGTTC
GTCCCACCACCTACTATCTCTGTCGTTCTTCCGCCACCTTGTTCGCTCTG
CCCCCCCCCCCCTCCCAGGTGAGGTTCATTACCGAGGACCTGACGCCCGT
CCAGCTGCACTCGATCGAGGCAAGCCGGAAAACTCTCAAGTGCCTCCTGT
GCGGGCTGAGGGGCGTCTGCGTCCAGTGCGCGGGGGGGCGCTGCCTTCAC
TCTTACCACCCCTGGTGCCTCATCCATTCCGAGAGGGGGATTATTATCCG
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13441:679..1379+

>mRNA_H-canaliculatus_F_contig13441.2800.1 ID=mRNA_H-canaliculatus_F_contig13441.2800.1|Name=mRNA_H-canaliculatus_F_contig13441.2800.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13441:679..1379+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCAAGTTCTGGAGCTTGAGGAGGGGAAGAAGGAGAAGCTGTGGGT
ACACGTCAGCTGCTCGTTGTGGATACCCGAGATGAAGCAAGTTCTGGAGC
TTGAGGAGGGGAAGAAGGAGAAGCTGTGGGTACACGTCAGCTGCTCGTTG
TGGATACCCGAGGTGAGGTTCATTACCGAGGACCTGACGCCCGTCCAGCT
GCACTCGATCGAGGCAAGCCGGAAAACTCTCAAGTGCCTCCTGTGCGGGC
TGAGGGGCGTCTGCGTCCAGTGCGCGGGGGGGCGCTGCCTTCACTCTTAC
CACCCCTGGTGCCTCATCCATTCCGAGAGGGGGATTATTATCCGCGTGAG
GTTCATTACCGAGGACCTGACGCCCGTCCAGCTGCACTCGATCGAGGCAA
GCCGGAAAACTCTCAAGTGCCTCCTGTGCGGGCTGAGGGGCGTCTGCGTC
CAGTGCGCGGGGGGGCGCTGCCTTCACTCTTACCACCCCTGGTGCCTCAT
CCATTCCGAGAGGGGGATTATTATCCGC
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