mRNA_H-canaliculatus_F_contig13433.2794.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13433.2794.1
Unique NamemRNA_H-canaliculatus_F_contig13433.2794.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13433.2794.1 vs. uniprot
Match: D8LCX9_ECTSI (Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.700e-8
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  177 GSNSGAWSKIGSMALSSIQRAAEVIAGVS--KEGSDDEQHGHQQYRAEVERTRSAATAFLSASSRS 368
            G  SG WSKIGS+ALSSIQRAAEVI G +  K+ S+ E+    Q RAEVERTR+A + FLSA   S
Sbjct: 1949 GGGSGTWSKIGSIALSSIQRAAEVIVGGAPPKDASEQEEL---QKRAEVERTRNAVSVFLSARGAS 2011
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BLAST of mRNA_H-canaliculatus_F_contig13433.2794.1 vs. uniprot
Match: A0A6H5JR08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR08_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.670e-6
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 3 
Query:  189 GAWSKIGSMALSSIQRAAEVIAGVSKEGSDDEQHGHQQYRAEVERTRSAATAFLSASSRS 368
            GAWSKIGS+ALSSIQRAAEVI G              Q RAEVERTR+A + FLSA   S
Sbjct: 1172 GAWSKIGSIALSSIQRAAEVIVGXXXXXXXXX-XXELQKRAEVERTRNAVSVFLSARGAS 1230
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13433.2794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCX9_ECTSI2.700e-860.61Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5JR08_9PHAE3.670e-660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13433contigH-canaliculatus_F_contig13433:735..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13433.2794.1prot_H-canaliculatus_F_contig13433.2794.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13433 947..1129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.9539783-UTR-H-canaliculatus_F_contig13433:734..9461622929083.9539783-UTR-H-canaliculatus_F_contig13433:734..946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13433 735..946 +
1696845673.1855342-UTR-H-canaliculatus_F_contig13433:734..9461696845673.1855342-UTR-H-canaliculatus_F_contig13433:734..946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13433 735..946 +
1622929084.0317345-UTR-H-canaliculatus_F_contig13433:1129..11611622929084.0317345-UTR-H-canaliculatus_F_contig13433:1129..1161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13433 1130..1161 +
1696845673.2112765-UTR-H-canaliculatus_F_contig13433:1129..11611696845673.2112765-UTR-H-canaliculatus_F_contig13433:1129..1161Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13433 1130..1161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.0171738-CDS-H-canaliculatus_F_contig13433:946..11291622929084.0171738-CDS-H-canaliculatus_F_contig13433:946..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13433 947..1129 +
1696845673.195704-CDS-H-canaliculatus_F_contig13433:946..11291696845673.195704-CDS-H-canaliculatus_F_contig13433:946..1129Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13433 947..1129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13433.2794.1

>prot_H-canaliculatus_F_contig13433.2794.1 ID=prot_H-canaliculatus_F_contig13433.2794.1|Name=mRNA_H-canaliculatus_F_contig13433.2794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
MALSSIQRAAEVIAGVSKEGSDDEQHGHQQYRAEVERTRSAATAFLSASS
RSRTANGDQE*
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mRNA from alignment at H-canaliculatus_F_contig13433:735..1161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13433.2794.1 ID=mRNA_H-canaliculatus_F_contig13433.2794.1|Name=mRNA_H-canaliculatus_F_contig13433.2794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=427bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13433:735..1161+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCGCCAAGAAGAGGAGGAGCGCAGGAGGAGGAGGAGGAGCAGGAGGT
AAGACCCGCAACGGGAGCCGGAGCCGAGGGAAGGAAAAGAGGGAGTCCGC
GGGCAAGCGGAGGACGGCGCGGAACGCCGACCAGAAGCGAGTAGGCCCGG
GTCCGGTCCCGGCCAGTGTCGTGGCGGGCAGCAACAGCGGGGCGTGGTCC
AAGATCGGGAGCATGGCGCTGAGCTCGATCCAGCGCGCGGCGGAGGTGAT
AGCCGGAGTGTCGAAGGAGGGCAGCGACGACGAGCAGCATGGGCACCAGC
AGTACCGCGCAGAGGTGGAACGGACGCGGTCGGCGGCGACCGCCTTCCTG
TCCGCGTCGTCTCGCAGCAGGACCGCCAATGGTGATCAAGAGTAGCAATT
GAAGTAGCAGTGGAGACAGCACGCTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13433:735..1161+

>mRNA_H-canaliculatus_F_contig13433.2794.1 ID=mRNA_H-canaliculatus_F_contig13433.2794.1|Name=mRNA_H-canaliculatus_F_contig13433.2794.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13433:735..1161+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGCTGAGCTCGATCCAGCGCGCGGCGGAGGTGATAGCCGGAGTGTC
GAAGGAGGGCAGCGACGACGAGCAGCATGGGCACCAGCAGTACCGCGCAG
AGGTGGAACGGACGCGGTCGGCGGCGACCGCCTTCCTGTCCGCGTCGTCT
CGCAGCAGGACCGCCAATGGTGATCAAGAGTAGATGGCGCTGAGCTCGAT
CCAGCGCGCGGCGGAGGTGATAGCCGGAGTGTCGAAGGAGGGCAGCGACG
ACGAGCAGCATGGGCACCAGCAGTACCGCGCAGAGGTGGAACGGACGCGG
TCGGCGGCGACCGCCTTCCTGTCCGCGTCGTCTCGCAGCAGGACCGCCAA
TGGTGATCAAGAGTAG
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