mRNA_H-canaliculatus_F_contig1343.2792.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1343.2792.1
Unique NamemRNA_H-canaliculatus_F_contig1343.2792.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1343.2792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1343contigH-canaliculatus_F_contig1343:24765..25279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.1171634-CDS-H-canaliculatus_F_contig1343:24764..251961622929083.1171634-CDS-H-canaliculatus_F_contig1343:24764..25196Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1343 24765..25196 +
1696845672.7598677-CDS-H-canaliculatus_F_contig1343:24764..251961696845672.7598677-CDS-H-canaliculatus_F_contig1343:24764..25196Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1343 24765..25196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.1329558-UTR-H-canaliculatus_F_contig1343:25196..252791622929083.1329558-UTR-H-canaliculatus_F_contig1343:25196..25279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1343 25197..25279 +
1696845672.7684333-UTR-H-canaliculatus_F_contig1343:25196..252791696845672.7684333-UTR-H-canaliculatus_F_contig1343:25196..25279Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1343 25197..25279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1343.2792.1prot_H-canaliculatus_F_contig1343.2792.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1343 24765..25196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1343.2792.1

>prot_H-canaliculatus_F_contig1343.2792.1 ID=prot_H-canaliculatus_F_contig1343.2792.1|Name=mRNA_H-canaliculatus_F_contig1343.2792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=144bp
SDRRGALGGAHPPGTGGRCFAVVLGVIAGVRDVAIQRPPAACRRGEGHES
SQPPLLCCNPSQRQESWRKSRQPTFLLIVTHRLRSRSETSRLPPRSAVLN
NQKLENFPAFIPPYPRHRNAQNASRVQAVMRRIFEPRRSSCRA*
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mRNA from alignment at H-canaliculatus_F_contig1343:24765..25279+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1343.2792.1 ID=mRNA_H-canaliculatus_F_contig1343.2792.1|Name=mRNA_H-canaliculatus_F_contig1343.2792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=515bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1343:24765..25279+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGATAGACGAGGGGCGCTTGGCGGGGCTCATCCCCCAGGGACAGGTGG
GCGTTGTTTCGCGGTCGTTCTCGGGGTTATTGCCGGTGTACGAGACGTAG
CGATTCAGCGACCGCCTGCAGCCTGTCGCCGTGGTGAAGGACATGAGTCG
TCGCAGCCGCCCCTGTTGTGTTGTAATCCCTCCCAAAGGCAAGAATCATG
GCGGAAATCCAGACAACCCACGTTTCTGTTGATTGTCACCCATCGCCTGC
GAAGTCGTTCTGAGACGTCCAGGCTGCCCCCGCGTTCAGCTGTTCTGAAC
AACCAGAAACTTGAGAATTTCCCAGCTTTCATCCCTCCATACCCACGCCA
TCGAAACGCTCAAAATGCCTCGCGTGTTCAAGCAGTTATGCGACGAATTT
TTGAACCCAGGCGGTCGAGCTGTCGAGCATAAGGAAGGATTGTAGGCATA
CCGCAGAGATTGGGCCGGCAAACGTGCCGGAGTTCCACGTGAACGGACCG
CGATGCACAGCGACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1343:24765..25279+

>mRNA_H-canaliculatus_F_contig1343.2792.1 ID=mRNA_H-canaliculatus_F_contig1343.2792.1|Name=mRNA_H-canaliculatus_F_contig1343.2792.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=864bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1343:24765..25279+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGATAGACGAGGGGCGCTTGGCGGGGCTCATCCCCCAGGGACAGGTGG
GCGTTGTTTCGCGGTCGTTCTCGGGGTTATTGCCGGTGTACGAGACGTAG
CGATTCAGCGACCGCCTGCAGCCTGTCGCCGTGGTGAAGGACATGAGTCG
TCGCAGCCGCCCCTGTTGTGTTGTAATCCCTCCCAAAGGCAAGAATCATG
GCGGAAATCCAGACAACCCACGTTTCTGTTGATTGTCACCCATCGCCTGC
GAAGTCGTTCTGAGACGTCCAGGCTGCCCCCGCGTTCAGCTGTTCTGAAC
AACCAGAAACTTGAGAATTTCCCAGCTTTCATCCCTCCATACCCACGCCA
TCGAAACGCTCAAAATGCCTCGCGTGTTCAAGCAGTTATGCGACGAATTT
TTGAACCCAGGCGGTCGAGCTGTCGAGCATAAAGCGATAGACGAGGGGCG
CTTGGCGGGGCTCATCCCCCAGGGACAGGTGGGCGTTGTTTCGCGGTCGT
TCTCGGGGTTATTGCCGGTGTACGAGACGTAGCGATTCAGCGACCGCCTG
CAGCCTGTCGCCGTGGTGAAGGACATGAGTCGTCGCAGCCGCCCCTGTTG
TGTTGTAATCCCTCCCAAAGGCAAGAATCATGGCGGAAATCCAGACAACC
CACGTTTCTGTTGATTGTCACCCATCGCCTGCGAAGTCGTTCTGAGACGT
CCAGGCTGCCCCCGCGTTCAGCTGTTCTGAACAACCAGAAACTTGAGAAT
TTCCCAGCTTTCATCCCTCCATACCCACGCCATCGAAACGCTCAAAATGC
CTCGCGTGTTCAAGCAGTTATGCGACGAATTTTTGAACCCAGGCGGTCGA
GCTGTCGAGCATAA
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