mRNA_H-canaliculatus_F_contig13425.2787.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13425.2787.1
Unique NamemRNA_H-canaliculatus_F_contig13425.2787.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13425.2787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13425contigH-canaliculatus_F_contig13425:2367..3041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13425.2787.1prot_H-canaliculatus_F_contig13425.2787.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13425 2367..3038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.889324-CDS-H-canaliculatus_F_contig13425:2366..24341622929082.889324-CDS-H-canaliculatus_F_contig13425:2366..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 2367..2434 +
1696845672.707652-CDS-H-canaliculatus_F_contig13425:2366..24341696845672.707652-CDS-H-canaliculatus_F_contig13425:2366..2434Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 2367..2434 +
1622929082.9041774-CDS-H-canaliculatus_F_contig13425:2803..30381622929082.9041774-CDS-H-canaliculatus_F_contig13425:2803..3038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 2804..3038 +
1696845672.717349-CDS-H-canaliculatus_F_contig13425:2803..30381696845672.717349-CDS-H-canaliculatus_F_contig13425:2803..3038Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 2804..3038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929082.9179194-UTR-H-canaliculatus_F_contig13425:3038..30411622929082.9179194-UTR-H-canaliculatus_F_contig13425:3038..3041Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13425 3039..3041 +
1696845672.7284958-UTR-H-canaliculatus_F_contig13425:3038..30411696845672.7284958-UTR-H-canaliculatus_F_contig13425:3038..3041Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13425 3039..3041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13425.2787.1

>prot_H-canaliculatus_F_contig13425.2787.1 ID=prot_H-canaliculatus_F_contig13425.2787.1|Name=mRNA_H-canaliculatus_F_contig13425.2787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MYLFYKPRWHSRGRPSGGKHNRDPPPSPGQVQCLILFRAWFFIERRRARA
CPSTLRVLSVAFFNEWTRVEPTVATQRWHIQQHCDASGSNLGWAPTSSWL
*
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mRNA from alignment at H-canaliculatus_F_contig13425:2367..3041+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13425.2787.1 ID=mRNA_H-canaliculatus_F_contig13425.2787.1|Name=mRNA_H-canaliculatus_F_contig13425.2787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=675bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13425:2367..3041+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATTTGTTTTACAAGCCTCGATGGCATTCGCGGGGTAGACCGAGCGG
CGGCAAGCACAACCGAGACCCGCGAGGAATGGTCCTGCATCCCCTGCCTG
CTGCCCATGTTTTTGGCACGGCCGTGTGGATCGACTGTCGGTGCTACCTG
CGCCAGCCGCTGTTTTCGGTGCGGAGCGTCGGGAATTCGTGCCATGTGGG
CTGCTTGCGGCGAAGCGAAACCGACGTTTCGCGATCCGTAAAAACGGTTC
GATTCGCATTTTTTGGGTCGTTGGCGGCTTCCTCGCCGGGCCAGTTGCGC
CCCCACCCCCTCCCCCCCCCCCCCCTCGTCGGGGCAAGTGCAGTGCTTGG
TTTTATTCCGGGCGTGGTTTTTCATTGAGCGTAGACGTGCACGCTGCGGC
TTCCTCGCCGGGCCAATTGCGCCCCCACCCCCTCCCCCCCGCCCCCCTCG
CCGGGGCAAGTGCAGTGCTTGATTTTATTCCGGGCGTGGTTTTTCATTGA
GCGTAGACGTGCACGAGCGTGTCCGTCTACACTCCGTGTGCTTTCTGTCG
CTTTCTTTAACGAGTGGACGCGCGTTGAGCCGACAGTCGCCACACAGCGA
TGGCACATACAGCAGCATTGTGACGCCAGCGGGTCCAACCTCGGTTGGGC
TCCAACCAGCAGCTGGCTGTAGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13425:2367..3041+

>mRNA_H-canaliculatus_F_contig13425.2787.1 ID=mRNA_H-canaliculatus_F_contig13425.2787.1|Name=mRNA_H-canaliculatus_F_contig13425.2787.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13425:2367..3041+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTATTTGTTTTACAAGCCTCGATGGCATTCGCGGGGTAGACCGAGCGG
CGGCAAGCACAACCGAGAATGTATTTGTTTTACAAGCCTCGATGGCATTC
GCGGGGTAGACCGAGCGGCGGCAAGCACAACCGAGACCCGCCCCCCTCGC
CGGGGCAAGTGCAGTGCTTGATTTTATTCCGGGCGTGGTTTTTCATTGAG
CGTAGACGTGCACGAGCGTGTCCGTCTACACTCCGTGTGCTTTCTGTCGC
TTTCTTTAACGAGTGGACGCGCGTTGAGCCGACAGTCGCCACACAGCGAT
GGCACATACAGCAGCATTGTGACGCCAGCGGGTCCAACCTCGGTTGGGCT
CCAACCAGCAGCTGGCTGTAGCCCGCCCCCCTCGCCGGGGCAAGTGCAGT
GCTTGATTTTATTCCGGGCGTGGTTTTTCATTGAGCGTAGACGTGCACGA
GCGTGTCCGTCTACACTCCGTGTGCTTTCTGTCGCTTTCTTTAACGAGTG
GACGCGCGTTGAGCCGACAGTCGCCACACAGCGATGGCACATACAGCAGC
ATTGTGACGCCAGCGGGTCCAACCTCGGTTGGGCTCCAACCAGCAGCTGG
CTGTAG
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