mRNA_H-canaliculatus_F_contig13425.2786.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13425.2786.1
Unique NamemRNA_H-canaliculatus_F_contig13425.2786.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13425.2786.1 vs. uniprot
Match: D8LIM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIM2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.360e-21
Identity = 71/125 (56.80%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:    1 MTLPAVITAAQAAGLAAEKRMRDNRHRQPSXXXXXQAIAGEREEEDRVQAPAVPVGMGAKRVGRVRGRGTPPAQREETFVGPRSAAGSSDFANGSSVYGTGKSQIQASPQYWVPRKLSRSPLNKD 375
            MTLP VIT   AAG   ++RM D+R   P          GE EEE   Q+P V VGMGAKRVGRVRGRG   A  +    GPRS AG       S VYGTG SQIQASPQYWVPRKLSRSP+ K+
Sbjct:  210 MTLPDVITEGLAAG---DRRMMDSRSSLPH-------TVGEEEEE---QSP-VAVGMGAKRVGRVRGRGGAAAASQRG--GPRSTAGG--IGASSPVYGTGNSQIQASPQYWVPRKLSRSPMKKN 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13425.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIM2_ECTSI1.360e-2156.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13425contigH-canaliculatus_F_contig13425:1162..1539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004370.1
Exons1
Model size380
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.0436327-CDS-H-canaliculatus_F_contig13425:1161..15391622929083.0436327-CDS-H-canaliculatus_F_contig13425:1161..1539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 1162..1539 +
1696845672.750954-CDS-H-canaliculatus_F_contig13425:1161..15391696845672.750954-CDS-H-canaliculatus_F_contig13425:1161..1539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13425 1162..1539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13425.2786.1prot_H-canaliculatus_F_contig13425.2786.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13425 1162..1539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13425.2786.1

>prot_H-canaliculatus_F_contig13425.2786.1 ID=prot_H-canaliculatus_F_contig13425.2786.1|Name=mRNA_H-canaliculatus_F_contig13425.2786.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
MTLPAVITAAQAAGLAAEKRMRDNRHRQPSPPPPTQAIAGEREEEDRVQA
PAVPVGMGAKRVGRVRGRGTPPAQREETFVGPRSAAGSSDFANGSSVYGT
GKSQIQASPQYWVPRKLSRSPLNKDS
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mRNA from alignment at H-canaliculatus_F_contig13425:1162..1539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13425.2786.1 ID=mRNA_H-canaliculatus_F_contig13425.2786.1|Name=mRNA_H-canaliculatus_F_contig13425.2786.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13425:1162..1539+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCTGCCCGCCGTCATCACCGCCGCGCAGGCCGCCGGGCTGGCCGC
CGAGAAGAGGATGAGGGACAACCGCCACCGGCAGCCCTCCCCGCCGCCGC
CGACGCAGGCGATAGCGGGAGAGCGGGAAGAAGAGGATAGGGTGCAAGCC
CCCGCTGTGCCCGTGGGGATGGGAGCCAAGCGGGTCGGGCGCGTTCGAGG
GCGCGGAACCCCCCCGGCCCAGCGGGAGGAGACGTTCGTAGGACCGCGCT
CGGCGGCCGGTAGCTCTGACTTCGCGAACGGTTCGTCTGTCTATGGGACC
GGGAAAAGCCAGATTCAGGCGAGTCCTCAGTATTGGGTCCCTAGGAAGCT
CAGCCGTTCGCCTCTTAACAAGGACAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13425:1162..1539+

>mRNA_H-canaliculatus_F_contig13425.2786.1 ID=mRNA_H-canaliculatus_F_contig13425.2786.1|Name=mRNA_H-canaliculatus_F_contig13425.2786.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13425:1162..1539+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCCTGCCCGCCGTCATCACCGCCGCGCAGGCCGCCGGGCTGGCCGC
CGAGAAGAGGATGAGGGACAACCGCCACCGGCAGCCCTCCCCGCCGCCGC
CGACGCAGGCGATAGCGGGAGAGCGGGAAGAAGAGGATAGGGTGCAAGCC
CCCGCTGTGCCCGTGGGGATGGGAGCCAAGCGGGTCGGGCGCGTTCGAGG
GCGCGGAACCCCCCCGGCCCAGCGGGAGGAGACGTTCGTAGGACCGCGCT
CGGCGGCCGGTAGCTCTGACTTCGCGAACGGTTCGTCTGTCTATGGGACC
GGGAAAAGCCAGATTCAGGCGAGTCCTCAGTATTGGGTCCCTAGGAAGCT
CAGCCGTTCGCCTCTTAACAAGGACAGCATGACCCTGCCCGCCGTCATCA
CCGCCGCGCAGGCCGCCGGGCTGGCCGCCGAGAAGAGGATGAGGGACAAC
CGCCACCGGCAGCCCTCCCCGCCGCCGCCGACGCAGGCGATAGCGGGAGA
GCGGGAAGAAGAGGATAGGGTGCAAGCCCCCGCTGTGCCCGTGGGGATGG
GAGCCAAGCGGGTCGGGCGCGTTCGAGGGCGCGGAACCCCCCCGGCCCAG
CGGGAGGAGACGTTCGTAGGACCGCGCTCGGCGGCCGGTAGCTCTGACTT
CGCGAACGGTTCGTCTGTCTATGGGACCGGGAAAAGCCAGATTCAGGCGA
GTCCTCAGTATTGGGTCCCTAGGAAGCTCAGCCGTTCGCCTCTTAACAAG
GACAGC
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