mRNA_H-canaliculatus_F_contig134.2772.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig134.2772.1
Unique NamemRNA_H-canaliculatus_F_contig134.2772.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: D8LGN2_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN2_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.910e-38
Identity = 87/122 (71.31%), Postives = 95/122 (77.87%), Query Frame = 2
Query:  677 GTVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGN-RGR--PAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQGDRRPLQVR 1033
            GTVFAYGATGAGKTYTMSG EQVLG S+GPGGR R GN RG+  PAA                G++D T GLVPRSM+ LFQQ+SALPPA+TMR+RASFYEIYNEVVYDLL QGDRRPLQVR
Sbjct:   86 GTVFAYGATGAGKTYTMSGREQVLGPSRGPGGRVRPGNNRGKAPPAA--------TGRAAPVAGVSDGTEGLVPRSMRFLFQQVSALPPAVTMRIRASFYEIYNEVVYDLLTQGDRRPLQVR 199          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A6H5JAE7_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAE7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.560e-38
Identity = 86/123 (69.92%), Postives = 95/123 (77.24%), Query Frame = 2
Query:  677 GTVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGN-RGR---PAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQGDRRPLQVR 1033
            GTVFAYGATGAGKTYTMSG EQVLG S+GPGGR R GN RG+   PAA                G++D T GLVPRSM+ LFQQ+SALPPA+TMR+RASFYEIYNEVVYDLL +GDRRPLQVR
Sbjct:  222 GTVFAYGATGAGKTYTMSGREQVLGPSRGPGGRVRPGNNRGKAPPPAA--------PGRAAPAAGVSDGTEGLVPRSMRFLFQQVSALPPAVTMRIRASFYEIYNEVVYDLLTKGDRRPLQVR 336          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A482UFD7_9ARCH (Kinesin motor domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFD7_9ARCH)

HSP 1 Score: 73.6 bits (179), Expect = 1.480e-10
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2
Query:  683 VFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQ-GDRRPLQ 1027
            V AYG TG+GKTYTMSGHE+ L S                                   ++D +AGL+ R++ +LF  I+A PP +   +RAS+ EIYNE+VYDLL   G+  PL+
Sbjct:  109 VLAYGQTGSGKTYTMSGHEEHLSSHT-------------------------------FSVSDASAGLILRAVDYLFSSIAAAPPDVRTIVRASYCEIYNEMVYDLLNMTGESLPLR 193          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A836CKM9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.250e-10
Identity = 51/120 (42.50%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMR--MRASFYEIYNEVVYDLLAQGDRRPLQVR 1033
            TVFAYGATG+GKT+ +SG EQ+  S  G GG   L                        G   E+ GLVPRSM HLF++++    A   R  +RAS+ E+YNE V+DLL    + PLQVR
Sbjct:  151 TVFAYGATGSGKTFCLSGLEQLQASRGGQGGGGGL-----------------------QGGAGESEGLVPRSMAHLFERMARSNAAADTRYRVRASYCEVYNEQVFDLL-HLQKTPLQVR 246          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A2P4X8I0_9STRA (Kinesin-like protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8I0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.240e-9
Identity = 42/107 (39.25%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLL 1000
            TVFAYG TG+GKTY+MSG  +++      G  PR G  G                     + D +AGL+PRS++HLF  +      +   +RAS+ EIYNE V+DLL
Sbjct:   82 TVFAYGQTGSGKTYSMSGLNELV-----AGTEPREGRMG-----------------ISNNVLDLSAGLIPRSLKHLFGLLDQAASNVNTVVRASYCEIYNEQVFDLL 166          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: H3G5R6_PHYRM (Kinesin-like protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5R6_PHYRM)

HSP 1 Score: 67.4 bits (163), Expect = 8.940e-9
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQG 1009
            TVFAYG TG+GKTY+MSG +++L  S    G     N  R                      + + GL+PR+++HLF  +   P  +   +RAS+ EIYNE V+DLL  G
Sbjct:   92 TVFAYGQTGSGKTYSMSGLDELLAGSDSREGLVGASNNAR----------------------ELSDGLIPRALKHLFALLEQAPIDVKTVVRASYCEIYNEQVFDLLNPG 179          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A8K0FYN3_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0FYN3_9COLE)

HSP 1 Score: 68.2 bits (165), Expect = 9.490e-9
Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLA 1003
            T+FAYG TG GKTYTM+G  + +G S                                    DE AG++PR+M HLF ++S++P   T+   ASF EIYNE ++DLL+
Sbjct:   90 TIFAYGQTGTGKTYTMTGESKTIGMSL---------------------------------EGDEQAGIIPRAMAHLFDELSSIPRQYTVH--ASFLEIYNEELFDLLS 162          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A6G0XKQ8_9STRA (Kinesin-like protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKQ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.030e-8
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLL--AQGDRRPLQVR 1033
            TVFAYG TG+GKTY+MSG E+ LG +K         ++G                       +++ GL+PRS+++LFQ I+A        M+AS+ EIYNE  YDLL  A G   PL VR
Sbjct:   52 TVFAYGQTGSGKTYSMSGLEEKLGVAKDH-------SKGE----------------------EQSDGLIPRSVRYLFQAINAKSNDTNFVMKASYCEIYNEQAYDLLNTASG---PLNVR 139          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: A0A3F2RMG2_9STRA (Kinesin-like protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMG2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.380e-8
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQG 1009
            T+FAYG TG+GKTY+MSG +++L      G  PR+                           + + GL+PR+++HLF  +   P  +   +RAS+ EIYNE V+DLL  G
Sbjct:   58 TIFAYGQTGSGKTYSMSGLDELL-----VGTGPRV-----------------ERVKISVNTTELSDGLIPRALKHLFTLLEQAPSEVKTVVRASYCEIYNEQVFDLLNPG 145          
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Match: W2R9C9_PHYPN (Kinesin-like protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R9C9_PHYPN)

HSP 1 Score: 65.9 bits (159), Expect = 4.480e-8
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  680 TVFAYGATGAGKTYTMSGHEQVLGSSKGPGGRPRLGNRGRPAAGXXXXXXXXXXXXXXXGINDETAGLVPRSMQHLFQQISALPPAITMRMRASFYEIYNEVVYDLLAQG 1009
            TVFAYG TG+GKTY+MSG  ++L  ++       L N G                       D + GL+PRS++H+F  +   P  +   +RAS+ EIYNE V+DLL  G
Sbjct:  174 TVFAYGQTGSGKTYSMSGLNELLAGTE-------LRNEGM----------------GDSNAMDLSDGLIPRSLKHIFSLLDQAPIDVKTVVRASYCEIYNEQVFDLLNPG 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig134.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGN2_ECTSI1.910e-3871.31Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JAE7_9PHAE5.560e-3869.92Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A482UFD7_9ARCH1.480e-1038.79Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CKM9_9STRA5.250e-1042.50P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2P4X8I0_9STRA7.240e-939.25Kinesin-like protein n=2 Tax=Phytophthora palmivor... [more]
H3G5R6_PHYRM8.940e-937.27Kinesin-like protein n=1 Tax=Phytophthora ramorum ... [more]
A0A8K0FYN3_9COLE9.490e-937.04Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A6G0XKQ8_9STRA3.030e-840.00Kinesin-like protein n=1 Tax=Aphanomyces euteiches... [more]
A0A3F2RMG2_9STRA4.380e-835.45Kinesin-like protein n=1 Tax=Phytophthora kernovia... [more]
W2R9C9_PHYPN4.480e-837.27Kinesin-like protein n=7 Tax=Phytophthora parasiti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig134contigH-canaliculatus_F_contig134:49685..50765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue5e-36
Seed eggNOG ortholog2880.D8LGN2
KEGG koko:K10399
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categorymitochondrion
Exons1
Model size1082
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.7784488-UTR-H-canaliculatus_F_contig134:49684..502971622929080.7784488-UTR-H-canaliculatus_F_contig134:49684..50297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 49685..50297 +
1696845671.8536382-UTR-H-canaliculatus_F_contig134:49684..502971696845671.8536382-UTR-H-canaliculatus_F_contig134:49684..50297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig134 49685..50297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929080.7928119-CDS-H-canaliculatus_F_contig134:50297..507651622929080.7928119-CDS-H-canaliculatus_F_contig134:50297..50765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 50298..50765 +
1696845671.8652744-CDS-H-canaliculatus_F_contig134:50297..507651696845671.8652744-CDS-H-canaliculatus_F_contig134:50297..50765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 50298..50765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig134.2772.1prot_H-canaliculatus_F_contig134.2772.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig134 50298..50765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig134.2772.1

>prot_H-canaliculatus_F_contig134.2772.1 ID=prot_H-canaliculatus_F_contig134.2772.1|Name=mRNA_H-canaliculatus_F_contig134.2772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=156bp
MTTLISVTTRCLHLLTHAVRPGTVFAYGATGAGKTYTMSGHEQVLGSSKG
PGGRPRLGNRGRPAAGRAGGRGGGRGIGGGGGINDETAGLVPRSMQHLFQ
QISALPPAITMRMRASFYEIYNEVVYDLLAQGDRRPLQVRSARTPTRLHE
RENTLE
back to top

mRNA from alignment at H-canaliculatus_F_contig134:49685..50765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig134.2772.1 ID=mRNA_H-canaliculatus_F_contig134.2772.1|Name=mRNA_H-canaliculatus_F_contig134.2772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:49685..50765+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGGAACGTTTACGCAGTTTCAACATGTTGTGCAGTAATCGCCGATGCT TCATTCGTTACCAATACTGATGAGTGCTCCGGCCACCATTTTCCCTCGCG GTGAATCTCTCTCTACTTCACAGCGGTACCGTATGTTGAGATTCTCAATA CTGTACTCAACTTTTCCCGTCCTTTCTTGACAATCCCATGCGGTAGAATT GCGCCTCCCTTCCTGACCACAACATCGCAACCGACTTATCCGGTTATAGA CTAGATCAAAACAAAGTCTTACAGCCACAACCTCGCGATTCCAACGCGTT ACTTTCAAGAAAAACGTAATAAAACCGTTGGAACACCTCTTGAGTTACGT CGTGAGAGGCGTCGCTCGAGGTTTCTGTTGAGCTCCAACCAATGAGGGTT CATTGATGTGTGAGGTTGGGACAAACGCATGAACAGAAAATAGTGTTTTA CAACTTACCGTAAACCTTGCAATAACAAAAGCATACACTCAAATATCAAA TTGTTACAGGAATAAGACCATGCGTTCATCTAGACTCTAAAAAAATACCA GGTACTTCGTTACAAGTAGTTGTACAACTTGTACTGATCTTTCAACCGAA CCTTCTCGACCACATGACCACGTTAATCTCCGTGACAACCCGCTGCTTAC ACTTACTTACACACGCGGTGAGACCAGGAACAGTGTTTGCCTACGGAGCG ACCGGTGCAGGCAAGACCTACACAATGTCCGGCCACGAGCAGGTCCTTGG ATCGAGTAAAGGCCCTGGCGGCCGTCCTCGGCTAGGGAACCGCGGGAGAC CAGCTGCCGGTCGTGCTGGCGGTCGCGGCGGCGGCCGCGGCATTGGCGGT GGCGGTGGGATTAACGACGAGACCGCGGGGCTCGTGCCGAGATCAATGCA GCACCTCTTCCAGCAGATCTCGGCGCTGCCCCCCGCGATCACGATGCGGA TGCGGGCCTCCTTCTACGAGATCTACAACGAGGTTGTCTACGACCTCTTG GCGCAGGGGGATCGTCGCCCCCTCCAGGTGCGTTCGGCGCGCACGCCCAC TAGACTACACGAGAGAGAAAATACACTAGAA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig134:49685..50765+

>mRNA_H-canaliculatus_F_contig134.2772.1 ID=mRNA_H-canaliculatus_F_contig134.2772.1|Name=mRNA_H-canaliculatus_F_contig134.2772.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:49685..50765+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCACGTTAATCTCCGTGACAACCCGCTGCTTACACTTACTTACACA
CGCGGTGAGACCAGGAACAGTGTTTGCCTACGGAGCGACCGGTGCAGGCA
AGACCTACACAATGTCCGGCCACGAGCAGGTCCTTGGATCGAGTAAAGGC
CCTGGCGGCCGTCCTCGGCTAGGGAACCGCGGGAGACCAGCTGCCGGTCG
TGCTGGCGGTCGCGGCGGCGGCCGCGGCATTGGCGGTGGCGGTGGGATTA
ACGACGAGACCGCGGGGCTCGTGCCGAGATCAATGCAGCACCTCTTCCAG
CAGATCTCGGCGCTGCCCCCCGCGATCACGATGCGGATGCGGGCCTCCTT
CTACGAGATCTACAACGAGGTTGTCTACGACCTCTTGGCGCAGGGGGATC
GTCGCCCCCTCCAGGTGCGTTCGGCGCGCACGCCCACTAGACTACACGAG
AGAGAAAATACACTAGAAATGACCACGTTAATCTCCGTGACAACCCGCTG
CTTACACTTACTTACACACGCGGTGAGACCAGGAACAGTGTTTGCCTACG
GAGCGACCGGTGCAGGCAAGACCTACACAATGTCCGGCCACGAGCAGGTC
CTTGGATCGAGTAAAGGCCCTGGCGGCCGTCCTCGGCTAGGGAACCGCGG
GAGACCAGCTGCCGGTCGTGCTGGCGGTCGCGGCGGCGGCCGCGGCATTG
GCGGTGGCGGTGGGATTAACGACGAGACCGCGGGGCTCGTGCCGAGATCA
ATGCAGCACCTCTTCCAGCAGATCTCGGCGCTGCCCCCCGCGATCACGAT
GCGGATGCGGGCCTCCTTCTACGAGATCTACAACGAGGTTGTCTACGACC
TCTTGGCGCAGGGGGATCGTCGCCCCCTCCAGGTGCGTTCGGCGCGCACG
CCCACTAGACTACACGAGAGAGAAAATACACTAGAA
back to top