mRNA_H-canaliculatus_F_contig134.2763.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig134.2763.1
Unique NamemRNA_H-canaliculatus_F_contig134.2763.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig134.2763.1 vs. uniprot
Match: A0A151ZCB8_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCB8_9MYCE)

HSP 1 Score: 56.6 bits (135), Expect = 1.660e-5
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  139 GITPLHFCIFRGNNEQAISIIESGECDLDAGDAGGQTPCHIACYRDNIDIVKKLLETGAD 318
            G+TPLH C ++G  E  + +IE  + +++  D  G+T  H AC+   I+++K LL  GAD
Sbjct:  270 GVTPLHICAYKGYVETMVLLIEKYQINVNIQDYSGKTALHYACHSAKIEVIKTLLNYGAD 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig134.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ZCB8_9MYCE1.660e-538.33Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig134contigH-canaliculatus_F_contig134:1175..3863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_002820.1
Exons3
Model size769
Cds size768
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig134.2763.1prot_H-canaliculatus_F_contig134.2763.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig134 1175..3863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.2293274-CDS-H-canaliculatus_F_contig134:1174..16691622929078.2293274-CDS-H-canaliculatus_F_contig134:1174..1669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 1175..1669 -
1696845671.4256947-CDS-H-canaliculatus_F_contig134:1174..16691696845671.4256947-CDS-H-canaliculatus_F_contig134:1174..1669Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 1175..1669 -
1622929078.2480059-CDS-H-canaliculatus_F_contig134:3027..31141622929078.2480059-CDS-H-canaliculatus_F_contig134:3027..3114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 3028..3114 -
1696845671.4362535-CDS-H-canaliculatus_F_contig134:3027..31141696845671.4362535-CDS-H-canaliculatus_F_contig134:3027..3114Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 3028..3114 -
1622929078.2666564-CDS-H-canaliculatus_F_contig134:3677..38631622929078.2666564-CDS-H-canaliculatus_F_contig134:3677..3863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 3678..3863 -
1696845671.4451044-CDS-H-canaliculatus_F_contig134:3677..38631696845671.4451044-CDS-H-canaliculatus_F_contig134:3677..3863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig134 3678..3863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig134.2763.1

>prot_H-canaliculatus_F_contig134.2763.1 ID=prot_H-canaliculatus_F_contig134.2763.1|Name=mRNA_H-canaliculatus_F_contig134.2763.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
VPPSRKRHATAKLGTDANTRGLRQNARERHREDTRRISNHKNEAMAGITP
LHFCIFRGNNEQAISIIESGECDLDAGDAGGQTPCHIACYRDNIDIVKKL
LETGADPSKADKSGNTPMHAAAGEGAMAVAKYFVEKGVSSSVKNADGFTP
LVSVRLRPPSQEGGGGVLIVSSFGAAFEGGDGRRGVVRRQRDGSRVEGRV
VLEGRALRHGHISSTESEPLADTLSLLGSVQRDSSAFRRAEKEHGRITRV
APHTN*
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mRNA from alignment at H-canaliculatus_F_contig134:1175..3863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig134.2763.1 ID=mRNA_H-canaliculatus_F_contig134.2763.1|Name=mRNA_H-canaliculatus_F_contig134.2763.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2689bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:1175..3863- (Hapterophycus canaliculatus Oshoro5f female)
GTTCCACCATCTCGAAAGCGCCACGCAACGGCCAAGCTGGGCACCGACGC
AAATACGAGGGGACTAAGGCAGAACGCAAGGGAGCGGCACAGAGAGGATA
CGAGGAGAATAAGCAACCATAAAAACGAAGCGATGGCCGGCATTACGCCC
CTGCACTTCTGCATATTTCGTGGCAACAACGAGCAGGTGAGAGACCCCTG
GAACCTATATAGAGAGGAAATTTGTTTGCATTTATTTGTCAAGAGGAGAA
AGGAAAGTCTTAGGAAAGTCTCATGTCTTGAAACAGCCTCAACTCCTGTT
CCATGACGCCTGACGACACCCCTTTTATAGCAGCGGTGTCGAGCCAACGC
TTCAGACGCCGTTAGCTACGGGAGAGAGAGATAGGTTGCGTTGTGCGTAT
GTCGGCGCTGCAACTGAAGTCTCTTCACGTACGCGTTTGCGCATTTGAAG
GGGCATGGCACGTTGAGAAATACAGGGCATCACGGAAGCATGGACGACGG
TGCCGACGACCTTTTGCGGTGCAACAAACCAGTGCAGGACGAGCACCTCC
CTTTCCTCCTAGCTGGGAGAGGCCGCGGACGCACCGGGTCCATTGCCGTC
GCCGTGACTCTCCTTCTCTGTCTCTCGTGTTCGTGAGTTTGACATTTCCT
CCTCTACTCGTTCTAGCCGTTCCGCCGACTTGTTGAGGATTAGCTTGGCT
CTTTCCTCTCCTGCCCCTTTCTGACGTATCTGTGTGCTCTACTCCCCAGG
CGATATCCATCATCGAAAGCGGCGAGTGCGACTTGGACGCCGGCGATGCT
GGAGGCCAGACCCCCTGCCACATCGCATGCTACCGGGTGAGGAGCAGCAA
CGCAGGAACAGAAACACGAGAGACGCGGGCAACAGCAGCAGCATCAGAAA
ATTGCCGCCCGTAATTTTTGAAACAATTTACTTGCACAACCCAGCCCGAA
GCAGTCCGCAGCAGCTTGTTGCCGAAATAAGGGTTCCGGTCCGCCCTCAT
GCAGGTTTGGGTTTGCGTCTCTCCGATGTACTTGTACGACGTATTTTAAC
ACCGCCTTCGGAATGTGTAAGCTTCGCGTCGATAGCTCATACCCCTGCCG
GCATCTCGAGCCTCATCTTTTTTAGGCTGACCGGAGTATTTTTTTTTCCT
GGCTGCGTTGATGTGTGACCAGTCGACTCATCATCCAAGCTTGGCGCGCG
TAGGTTATAGTGTAAGTGAAGATCTTCTACTTGTTTTATTTCAGTCAACA
ACACGAAAGGATGCGTCCTCGGCAGCGATAATGGCACCTGTGATGTGTGT
GTAGGTGGCAACAGCAGCAACAGAAGCGGCAGCGTTATGTAGCAACGCAG
GCGAAGTTTTGTGATATACATCCATCTCACATGTGTGACAGACTACCGGT
ACGACTCGTGCATGGGGAGCACCGGTCGTCCCGTCGTCCCGCCGTCCCGC
ATCTCAATTTCAAGTCCGACACATCGGACGAGGAGACTTCCATGATTCGC
CGACACGTCAAACCGCTGTACTTTACACTTACACAAAACGAACCATCATT
TTTTTTTACGACGACAGAAGCACCCGCAAAAAAGACTTCCAATAAGCCTC
ACGGTTGTGTATCAAACCTTGGGGTACGCACTGTACGGCGGACTCAGGAG
TGAACGTTCTCAACACTTGTGGGACAATCTCTGAAAGTTTATAAGTATGG
TGCATCCTCCGTTTTCGTTAGAGTTGAAGCCCAGGAGGCAATGTTTTGCG
GGGGTGCTCTGAACGCGAACAGCCGATTCGCCTCTTCTGCTGTGCCCGTG
CGCGAGCGTCTCCGCCCGCCGCTATCGCGAGCACGGGAGGAAAAATACAA
TACGGTCGAGACGACGATCCAACTTTTATGCAGGGGTAACAAGCAGGACG
TCACGCAAGATGTCAGTTTTTTTTTATTCGAATCGATTGGAAAAGGCCTC
TCTAGACGATCCTTTCGATCACATAATTCATAAACGAGACTCGTTCGGCG
ACGACCGGCACTGGGCAAGGGAGGCGTGCGGGAACCGGCGTGAGAGAAGA
AGGGCAAGCGAGGCACGTGCTCAGCGTCACCACACACGGAGGCACTGCGC
CGGTTGGCGCTGTCGATGCGAACACAAGGCGAACACGAAATTAACACGCA
TGTTTGCCGGGCCCCCGCCCCCGCCCCCGCCCCCCCCCACACAGGACAAC
ATCGATATCGTCAAGAAGCTACTGGAGACTGGCGCGGATCCTTCCAAGGC
CGATAAGAGCGGAAACACCCCCATGCATGCCGCGGCGGGGGAGGGAGCGA
TGGCCGTGGCGAAGTACTTCGTGGAAAAGGGGGTCTCCTCCAGCGTCAAG
AACGCCGACGGCTTTACTCCGCTGGTCAGTGTTAGGTTGCGGCCTCCGTC
TCAAGAGGGTGGGGGGGGGGTGCTGATTGTTTCTTCTTTCGGCGCAGCCT
TTGAAGGAGGGGACGGGAGAAGAGGAGTGGTCCGGAGGCAGCGAGACGGG
TCAAGAGTGGAGGGAAGGGTAGTTTTGGAAGGGCGAGCTCTTCGTCATGG
GCACATATCCTCCACGGAGTCTGAACCACTCGCGGACACACTCTCGCTCC
TGGGATCGGTGCAACGAGACTCGTCGGCGTTTCGACGAGCCGAGAAAGAA
CACGGAAGGATCACACGTGTTGCACCGCACACAAATTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig134:1175..3863-

>mRNA_H-canaliculatus_F_contig134.2763.1 ID=mRNA_H-canaliculatus_F_contig134.2763.1|Name=mRNA_H-canaliculatus_F_contig134.2763.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig134:1175..3863- (Hapterophycus canaliculatus Oshoro5f female)
GTTCCACCATCTCGAAAGCGCCACGCAACGGCCAAGCTGGGCACCGACGC
AAATACGAGGGGACTAAGGCAGAACGCAAGGGAGCGGCACAGAGAGGATA
CGAGGAGAATAAGCAACCATAAAAACGAAGCGATGGCCGGCATTACGCCC
CTGCACTTCTGCATATTTCGTGGCAACAACGAGCAGGTTCCACCATCTCG
AAAGCGCCACGCAACGGCCAAGCTGGGCACCGACGCAAATACGAGGGGAC
TAAGGCAGAACGCAAGGGAGCGGCACAGAGAGGATACGAGGAGAATAAGC
AACCATAAAAACGAAGCGATGGCCGGCATTACGCCCCTGCACTTCTGCAT
ATTTCGTGGCAACAACGAGCAGGCGATATCCATCATCGAAAGCGGCGAGT
GCGACTTGGACGCCGGCGATGCTGGAGGCCAGACCCCCTGCCACATCGCA
TGCTACCGGGCGATATCCATCATCGAAAGCGGCGAGTGCGACTTGGACGC
CGGCGATGCTGGAGGCCAGACCCCCTGCCACATCGCATGCTACCGGGACA
ACATCGATATCGTCAAGAAGCTACTGGAGACTGGCGCGGATCCTTCCAAG
GCCGATAAGAGCGGAAACACCCCCATGCATGCCGCGGCGGGGGAGGGAGC
GATGGCCGTGGCGAAGTACTTCGTGGAAAAGGGGGTCTCCTCCAGCGTCA
AGAACGCCGACGGCTTTACTCCGCTGGTCAGTGTTAGGTTGCGGCCTCCG
TCTCAAGAGGGTGGGGGGGGGGTGCTGATTGTTTCTTCTTTCGGCGCAGC
CTTTGAAGGAGGGGACGGGAGAAGAGGAGTGGTCCGGAGGCAGCGAGACG
GGTCAAGAGTGGAGGGAAGGGTAGTTTTGGAAGGGCGAGCTCTTCGTCAT
GGGCACATATCCTCCACGGAGTCTGAACCACTCGCGGACACACTCTCGCT
CCTGGGATCGGTGCAACGAGACTCGTCGGCGTTTCGACGAGCCGAGAAAG
AACACGGAAGGATCACACGTGTTGCACCGCACACAAATTAAGACAACATC
GATATCGTCAAGAAGCTACTGGAGACTGGCGCGGATCCTTCCAAGGCCGA
TAAGAGCGGAAACACCCCCATGCATGCCGCGGCGGGGGAGGGAGCGATGG
CCGTGGCGAAGTACTTCGTGGAAAAGGGGGTCTCCTCCAGCGTCAAGAAC
GCCGACGGCTTTACTCCGCTGGTCAGTGTTAGGTTGCGGCCTCCGTCTCA
AGAGGGTGGGGGGGGGGTGCTGATTGTTTCTTCTTTCGGCGCAGCCTTTG
AAGGAGGGGACGGGAGAAGAGGAGTGGTCCGGAGGCAGCGAGACGGGTCA
AGAGTGGAGGGAAGGGTAGTTTTGGAAGGGCGAGCTCTTCGTCATGGGCA
CATATCCTCCACGGAGTCTGAACCACTCGCGGACACACTCTCGCTCCTGG
GATCGGTGCAACGAGACTCGTCGGCGTTTCGACGAGCCGAGAAAGAACAC
GGAAGGATCACACGTGTTGCACCGCACACAAATTAA
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