mRNA_H-canaliculatus_F_contig1339.2756.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1339.2756.1
Unique NamemRNA_H-canaliculatus_F_contig1339.2756.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1339.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1339contigH-canaliculatus_F_contig1339:25398..26351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-15_000040.1
Exons1
Model size954
Cds size930
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.0450597-UTR-H-canaliculatus_F_contig1339:25397..254211622929077.0450597-UTR-H-canaliculatus_F_contig1339:25397..25421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 25398..25421 +
1696845670.9455442-UTR-H-canaliculatus_F_contig1339:25397..254211696845670.9455442-UTR-H-canaliculatus_F_contig1339:25397..25421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 25398..25421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.0689921-CDS-H-canaliculatus_F_contig1339:25421..263511622929077.0689921-CDS-H-canaliculatus_F_contig1339:25421..26351Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 25422..26351 +
1696845670.9547973-CDS-H-canaliculatus_F_contig1339:25421..263511696845670.9547973-CDS-H-canaliculatus_F_contig1339:25421..26351Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 25422..26351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1339.2756.1prot_H-canaliculatus_F_contig1339.2756.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1339 25422..26351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1339.2756.1

>prot_H-canaliculatus_F_contig1339.2756.1 ID=prot_H-canaliculatus_F_contig1339.2756.1|Name=mRNA_H-canaliculatus_F_contig1339.2756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=310bp
MARFGEVGTSKPKFCSLHAQDDAVDLCVKRCIQAGCSNIAKFGRMGTTKA
EFCLVHAHESMVNLRLLQCHQPCCTKRATFGIPGAQSMEFCAVHAREGMV
ARLHRKCHFPGCCKSSSYGVEGSKKGEYCATHAKEGMIDVYKKTCAHEGC
RTRPTYGVRGSKVSEFCSKHAKEGMVDITSKRCGHPGCASRPHHGIEGSK
NPEFCAPHARPGMVDVMNKRCGHPGCYTTAFYGTEGSRKPEFCRKHAESG
MISLSKRCTHQGCSKHPSHGVPGSRTRIFCAEHSPDGMAAIQSKNRTRPG
RVQQASRARG
back to top

mRNA from alignment at H-canaliculatus_F_contig1339:25398..26351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1339.2756.1 ID=mRNA_H-canaliculatus_F_contig1339.2756.1|Name=mRNA_H-canaliculatus_F_contig1339.2756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:25398..26351+ (Hapterophycus canaliculatus Oshoro5f female)
TGCCATCACCAGGGTTGCACCAAGATGGCGAGGTTCGGGGAGGTCGGGAC
TTCGAAGCCTAAGTTCTGCAGTCTGCATGCTCAAGATGACGCGGTAGACC
TGTGCGTAAAGAGATGCATTCAAGCTGGTTGCAGCAACATCGCGAAATTC
GGCAGGATGGGGACCACGAAAGCGGAGTTCTGTCTCGTGCATGCTCATGA
GAGCATGGTAAACCTCCGGTTATTGCAATGTCACCAACCTTGTTGCACCA
AAAGAGCGACCTTTGGGATCCCTGGAGCCCAGAGTATGGAGTTCTGCGCG
GTGCATGCGCGAGAAGGGATGGTCGCCAGGTTGCACAGGAAGTGCCACTT
CCCAGGCTGTTGCAAATCGTCTTCATACGGCGTGGAGGGCTCGAAGAAGG
GAGAATACTGTGCGACGCACGCAAAGGAGGGGATGATTGACGTGTACAAG
AAGACTTGTGCTCACGAGGGTTGCAGGACACGACCAACGTACGGCGTGAG
AGGCTCAAAAGTATCGGAATTCTGCTCCAAGCACGCCAAGGAAGGAATGG
TCGACATCACGAGTAAGAGGTGCGGCCATCCAGGTTGCGCCAGTCGGCCG
CACCATGGCATCGAAGGTAGTAAAAACCCGGAATTTTGCGCCCCCCACGC
TCGTCCTGGAATGGTTGATGTCATGAACAAGAGGTGCGGCCACCCAGGCT
GCTACACAACAGCGTTTTATGGTACGGAGGGCAGCAGGAAGCCCGAATTC
TGCCGAAAGCACGCTGAAAGCGGAATGATAAGTCTTAGCAAGAGGTGCAC
CCACCAAGGCTGCTCCAAGCATCCGTCCCACGGCGTGCCCGGGAGCCGGA
CCAGGATATTCTGCGCCGAACATTCTCCGGACGGAATGGCCGCCATCCAA
AGCAAGAACCGCACCCGCCCCGGCCGCGTGCAACAAGCCTCTCGCGCGCG
TGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1339:25398..26351+

>mRNA_H-canaliculatus_F_contig1339.2756.1 ID=mRNA_H-canaliculatus_F_contig1339.2756.1|Name=mRNA_H-canaliculatus_F_contig1339.2756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1860bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:25398..26351+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGAGGTTCGGGGAGGTCGGGACTTCGAAGCCTAAGTTCTGCAGTCT
GCATGCTCAAGATGACGCGGTAGACCTGTGCGTAAAGAGATGCATTCAAG
CTGGTTGCAGCAACATCGCGAAATTCGGCAGGATGGGGACCACGAAAGCG
GAGTTCTGTCTCGTGCATGCTCATGAGAGCATGGTAAACCTCCGGTTATT
GCAATGTCACCAACCTTGTTGCACCAAAAGAGCGACCTTTGGGATCCCTG
GAGCCCAGAGTATGGAGTTCTGCGCGGTGCATGCGCGAGAAGGGATGGTC
GCCAGGTTGCACAGGAAGTGCCACTTCCCAGGCTGTTGCAAATCGTCTTC
ATACGGCGTGGAGGGCTCGAAGAAGGGAGAATACTGTGCGACGCACGCAA
AGGAGGGGATGATTGACGTGTACAAGAAGACTTGTGCTCACGAGGGTTGC
AGGACACGACCAACGTACGGCGTGAGAGGCTCAAAAGTATCGGAATTCTG
CTCCAAGCACGCCAAGGAAGGAATGGTCGACATCACGAGTAAGAGGTGCG
GCCATCCAGGTTGCGCCAGTCGGCCGCACCATGGCATCGAAGGTAGTAAA
AACCCGGAATTTTGCGCCCCCCACGCTCGTCCTGGAATGGTTGATGTCAT
GAACAAGAGGTGCGGCCACCCAGGCTGCTACACAACAGCGTTTTATGGTA
CGGAGGGCAGCAGGAAGCCCGAATTCTGCCGAAAGCACGCTGAAAGCGGA
ATGATAAGTCTTAGCAAGAGGTGCACCCACCAAGGCTGCTCCAAGCATCC
GTCCCACGGCGTGCCCGGGAGCCGGACCAGGATATTCTGCGCCGAACATT
CTCCGGACGGAATGGCCGCCATCCAAAGCAAGAACCGCACCCGCCCCGGC
CGCGTGCAACAAGCCTCTCGCGCGCGTGGCATGGCGAGGTTCGGGGAGGT
CGGGACTTCGAAGCCTAAGTTCTGCAGTCTGCATGCTCAAGATGACGCGG
TAGACCTGTGCGTAAAGAGATGCATTCAAGCTGGTTGCAGCAACATCGCG
AAATTCGGCAGGATGGGGACCACGAAAGCGGAGTTCTGTCTCGTGCATGC
TCATGAGAGCATGGTAAACCTCCGGTTATTGCAATGTCACCAACCTTGTT
GCACCAAAAGAGCGACCTTTGGGATCCCTGGAGCCCAGAGTATGGAGTTC
TGCGCGGTGCATGCGCGAGAAGGGATGGTCGCCAGGTTGCACAGGAAGTG
CCACTTCCCAGGCTGTTGCAAATCGTCTTCATACGGCGTGGAGGGCTCGA
AGAAGGGAGAATACTGTGCGACGCACGCAAAGGAGGGGATGATTGACGTG
TACAAGAAGACTTGTGCTCACGAGGGTTGCAGGACACGACCAACGTACGG
CGTGAGAGGCTCAAAAGTATCGGAATTCTGCTCCAAGCACGCCAAGGAAG
GAATGGTCGACATCACGAGTAAGAGGTGCGGCCATCCAGGTTGCGCCAGT
CGGCCGCACCATGGCATCGAAGGTAGTAAAAACCCGGAATTTTGCGCCCC
CCACGCTCGTCCTGGAATGGTTGATGTCATGAACAAGAGGTGCGGCCACC
CAGGCTGCTACACAACAGCGTTTTATGGTACGGAGGGCAGCAGGAAGCCC
GAATTCTGCCGAAAGCACGCTGAAAGCGGAATGATAAGTCTTAGCAAGAG
GTGCACCCACCAAGGCTGCTCCAAGCATCCGTCCCACGGCGTGCCCGGGA
GCCGGACCAGGATATTCTGCGCCGAACATTCTCCGGACGGAATGGCCGCC
ATCCAAAGCAAGAACCGCACCCGCCCCGGCCGCGTGCAACAAGCCTCTCG
CGCGCGTGGC
back to top