mRNA_H-canaliculatus_F_contig1339.2754.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1339.2754.1
Unique NamemRNA_H-canaliculatus_F_contig1339.2754.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1339.2754.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 6.810e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  242 CAQPGCTKQPSYGVAGTKNFEFCTAHAKDGMVDVRNKR 355
            C    CTK+P+YGVAG+K  EFC+ HA+DGMV+V NKR
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_H-canaliculatus_F_contig1339.2754.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.000e-5
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  242 CAQPGCTKQPSYGVAGTKNFEFCTAHAKDGMVDVRNKR 355
            C    CTK+P+YGVAG+K  EFC+ HA+DGMV+V NKR
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1339.2754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI6.810e-663.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE1.000e-563.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1339contigH-canaliculatus_F_contig1339:6003..9653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001960.2
Exons2
Model size2814
Cds size1614
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1339.2754.1prot_H-canaliculatus_F_contig1339.2754.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1339 6232..7845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.8544211-UTR-H-canaliculatus_F_contig1339:6002..62311622929076.8544211-UTR-H-canaliculatus_F_contig1339:6002..6231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 6003..6231 +
1696845670.902048-UTR-H-canaliculatus_F_contig1339:6002..62311696845670.902048-UTR-H-canaliculatus_F_contig1339:6002..6231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 6003..6231 +
1622929076.9707425-UTR-H-canaliculatus_F_contig1339:7845..79061622929076.9707425-UTR-H-canaliculatus_F_contig1339:7845..7906Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 7846..7906 +
1696845670.9230208-UTR-H-canaliculatus_F_contig1339:7845..79061696845670.9230208-UTR-H-canaliculatus_F_contig1339:7845..7906Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 7846..7906 +
1622929076.9915748-UTR-H-canaliculatus_F_contig1339:8743..96531622929076.9915748-UTR-H-canaliculatus_F_contig1339:8743..9653Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 8744..9653 +
1696845670.933414-UTR-H-canaliculatus_F_contig1339:8743..96531696845670.933414-UTR-H-canaliculatus_F_contig1339:8743..9653Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1339 8744..9653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.8740807-CDS-H-canaliculatus_F_contig1339:6231..78451622929076.8740807-CDS-H-canaliculatus_F_contig1339:6231..7845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 6232..7845 +
1696845670.9109557-CDS-H-canaliculatus_F_contig1339:6231..78451696845670.9109557-CDS-H-canaliculatus_F_contig1339:6231..7845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1339 6232..7845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1339.2754.1

>prot_H-canaliculatus_F_contig1339.2754.1 ID=prot_H-canaliculatus_F_contig1339.2754.1|Name=mRNA_H-canaliculatus_F_contig1339.2754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=538bp
MVYICAQPGCTKQPSYGVAGTKNFEFCTAHAKDGMVDVRNKRCAEEGCTK
VPSYGAAGTKKTQFCKQHAKHGMVNVRSKRCARQGCPKIPSFGRAGTRTA
VFCGEHAEEAMVDVCSKRCDHPGCGKNPSYGEPGTKTKKFCRQHAGARMV
AVIGKRCAIPGCTNMSDFGLEGRKNVGFCPDHANGARPENVEINLSRRKC
VHPEGCNTIPSFGEEGTKAARYCRTHATEGMVDVYRKRCAHAGCTIRRSF
GVPGSKKPEFCMQHAQPGMVDVVTGPTKRCSLPDCMTRSSYGLEGTKKPT
HCARHATVGMVNVSTKKCGHPEGCSAAALYGEEGSNKEEFCSHHKRQGMV
NVRNKACGSPGCTTMPSYGALNSRTREFCSKHAKDGMVRVCDNTRRTCGH
PHCSKYPHFAMAGTKPGIFCGKHAREGMVNISSSKKCAHPNCLTRPSYGE
PSSNKEEFCITHAKDGMVRTRSKRSADDNVRVLTAGAARRKKRGKPSALT
GNSMRKGTAGRKLPRQIAAIAPAVDGPVKTEMSEEES*
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mRNA from alignment at H-canaliculatus_F_contig1339:6003..9653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1339.2754.1 ID=mRNA_H-canaliculatus_F_contig1339.2754.1|Name=mRNA_H-canaliculatus_F_contig1339.2754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3651bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:6003..9653+ (Hapterophycus canaliculatus Oshoro5f female)
GGGTTGAGCAACTTGAAACGCAGAGCTGAACAACTTCATCATCTACACAG
CTCGTTCCATATCCTGCGGGTGGTGCTGGTGCTGGTGCTGGTTCTGGTGT
CTGACGCTGCTGCACTGTCGCATGCTGGTTCGTTGCTCTACTTCCGAAGA
GTCGACAGCGGTTTTGATGCCCGACAGCGCCCGACCCTTCTCAAACCCGA
TTTAGGGCGGCCTGGGGACCCGAAGATACATGGTTTACATATGTGCGCAA
CCTGGCTGCACCAAGCAGCCCTCGTACGGCGTCGCTGGGACCAAAAATTT
TGAGTTTTGCACAGCACACGCCAAAGATGGGATGGTCGATGTTCGAAACA
AGAGGTGTGCCGAAGAAGGTTGCACCAAGGTGCCTTCCTACGGGGCCGCC
GGGACAAAGAAGACCCAGTTTTGTAAGCAGCACGCGAAGCATGGAATGGT
CAACGTCCGCAGTAAGAGATGTGCCCGGCAAGGCTGCCCAAAAATCCCTT
CGTTCGGTCGTGCGGGTACCAGGACGGCCGTGTTCTGCGGCGAGCACGCT
GAGGAAGCGATGGTGGACGTCTGCAGCAAGAGGTGCGACCACCCCGGTTG
CGGGAAGAACCCGTCCTACGGCGAGCCAGGCACGAAGACCAAGAAATTCT
GCAGGCAACACGCCGGGGCCCGGATGGTCGCCGTCATAGGTAAGCGGTGC
GCCATTCCGGGGTGCACCAACATGTCGGACTTTGGCCTGGAAGGCAGGAA
AAATGTTGGATTTTGCCCGGACCACGCCAACGGGGCCCGGCCGGAGAACG
TGGAGATCAACCTGAGCCGCAGGAAGTGCGTCCACCCGGAAGGCTGCAAC
ACGATCCCGTCCTTCGGCGAAGAGGGCACGAAGGCGGCGCGGTACTGCCG
AACCCACGCCACAGAGGGCATGGTCGACGTTTACCGCAAGAGGTGCGCCC
ACGCCGGCTGTACGATTCGGCGGTCTTTCGGCGTACCTGGCAGCAAGAAG
CCGGAGTTCTGCATGCAGCACGCCCAACCCGGAATGGTTGACGTCGTGAC
CGGTCCCACCAAAAGGTGTAGCCTCCCGGACTGTATGACCAGGTCGTCAT
ATGGCCTCGAAGGGACGAAAAAGCCTACGCACTGCGCCCGGCATGCAACC
GTGGGAATGGTGAACGTGAGCACCAAGAAATGTGGGCATCCAGAAGGTTG
CAGCGCCGCTGCACTCTACGGCGAGGAAGGCAGCAACAAGGAGGAGTTTT
GCTCACACCACAAACGGCAGGGAATGGTGAATGTACGCAATAAGGCCTGT
GGCAGCCCGGGCTGCACCACGATGCCGTCGTATGGCGCTTTGAACAGCAG
GACGAGGGAGTTTTGCTCCAAGCACGCGAAGGACGGCATGGTTCGCGTTT
GTGACAATACGCGAAGGACCTGCGGCCACCCACATTGCTCGAAGTACCCT
CACTTCGCCATGGCCGGCACCAAGCCGGGGATATTCTGTGGCAAGCACGC
GAGAGAAGGAATGGTCAACATTAGCAGCAGCAAGAAATGCGCCCACCCAA
ACTGCCTCACGAGACCGTCGTACGGCGAACCAAGCAGCAACAAGGAGGAG
TTCTGCATTACGCATGCGAAAGACGGGATGGTGCGCACGAGATCAAAGCG
GTCCGCCGATGATAACGTCCGCGTTTTGACGGCGGGGGCCGCGAGACGGA
AAAAGCGCGGCAAGCCATCGGCGCTCACCGGGAATTCCATGCGGAAGGGA
ACGGCAGGCAGGAAGCTGCCCCGCCAGATTGCCGCGATAGCCCCGGCGGT
AGATGGTCCGGTCAAGACAGAGATGTCCGAGGAGGAGAGCTAAGGGAGGC
TTGCGGGGCGGAGCAGAGAGCGAGGGGGACGTCGCGGGAAGCGAGACAGA
GGAGGTGCGTTTGTTCATGCCAAGTATGGGCAAGTGTCAGCGTTGTGTGT
GTGCAGTCCAAAAATGTGCGCCCTTGGCGCACGCAGACACGGTGGTGGGA
TTAAATGCACCAAGATCGACAGAGACACAAGATCCGGTTGCGTAGCAAAT
GTCGTCGACAGCCCATTTTCTCTCGGCCTGATATCTCAAGTTCTGATTGT
TTCCACCAATGACATGTTTTCGAGGTGATATCGTGCCTGATTCTGATGCA
TGGTGCGGCCCTAGCTGTTGTATTTGTCTTTGTTGTTGTCGATGTTGTCG
TTGTCGTTTTTGTCGTTGCCTCTCGCTTTTATTGTTAGTCTCCGATTCCC
GAACAAGCGTGATCAACGTAAGAACCAGAATGCCACAGCGAGACCTTGTC
TTCTCTTGAGCAAACGACAGAAGACGGTAAAACGTGGGGCTTTTGCGACA
GGTATCGGTACAGGCGAAATGAACCATTGAGAAGAAATGCAATTTCGACG
CTGATTGGCCAAATCCCTCGGTTACCGTGCTTTGTTCGAGCCTTGAGAAG
TATACCGCACCTGCCATCCCTATCCCCCCTCCCTCCCCCCCTGCCGGCTC
GGCAGGTTGAGAGGTCGTTACTTTTGGCTGAGAGGTCTTAAGATTATGCT
CAATGTTGTGGATGAACGCGCCGGATAGCTCGTCTGAAACCCAGGCTTTT
GCGTTGCTCCGACTGTTGCCTGTGGCGTCAAACACTCTGCGGACAAGCAC
ATTGCCGACGTTTTGTGAGATGCCTGTGTTCCGACCCATCTTTCGCGCGC
TCCCCTTACCCCGTTTGTGGCCGCCCGTTGTTTTCACGCAGGTTGAGAAG
CATCGACGCAACCGGAGAGCTGGTCTCACGAATCCCTATAGGCGTGTTGA
AGTACCCCGACCTCGATGCGCGTTGTTGTTCTTCTTGCACATCCGTCGCG
TCCTTCAGTGTTTTTCATGTACGTGTAGAAGTTGTTCTTGCTGTATTTGT
TGGTGACGCACTTCGTGGCTCTCTGTACATTCCCCGCCCGAATGCGGCGC
TGCTTCTTTCTGCGCGTGATGCGTGATTCACCAATCACGATCAACGGGTG
TCGCTGCGTGGCTTGAGGAGGGAAAACTTGCCCAGTTCGAAAGCATACGT
GAGGACATGCTGGATTCGAGAAGAATGTCCTGAAAAATGTTTCTTGGGTC
TGTCGTGATGGACCAAAATATGCCTGCTCGGACAACGAGCTTGTTTGACC
ACGATAATTGATGTCTCTCCCAGGGGAAGACAACAGGGTCACTGTTCTTT
TTGACTTGACTCGAACGCAGCAAGCTGGAGGGAATCGAGCATAAAATCTC
CGTTTGTAGGTTGAATTCCCAGCCCGTGTAAGCTGATGCTGGCTGGCTGG
CAGGCTGATGGTGAGAGTGGCGGCCCAAAAGCAACACAGCCTGTCGTTCC
CGACTTATCAAACGTGACTGCTTCTGAAAAGGGCAAAGGATTGCTGTAAC
GCGTACGCGTTTAGTTTCCAGATGTTTGCGTGACGGTCCGCTCGGCCACA
CAGCACGGTCTGGAGACTCAGCGACGGCTTCCAGGTGGCGACAACTGGTA
TGCAGGACTTCGCGCTGGAATCCGGCTTTCGTTGCGATCGAGAGTGTGTG
ATATGCCACGAGCACAAATGAGCTGTATGTCCACATGGGCGGCAGGGCGA
AACACATATGTTTGACGGCACAGGTCACAGCTGGAGAAGTGAACGCAACA
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1339:6003..9653+

>mRNA_H-canaliculatus_F_contig1339.2754.1 ID=mRNA_H-canaliculatus_F_contig1339.2754.1|Name=mRNA_H-canaliculatus_F_contig1339.2754.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3228bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1339:6003..9653+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTACATATGTGCGCAACCTGGCTGCACCAAGCAGCCCTCGTACGG
CGTCGCTGGGACCAAAAATTTTGAGTTTTGCACAGCACACGCCAAAGATG
GGATGGTCGATGTTCGAAACAAGAGGTGTGCCGAAGAAGGTTGCACCAAG
GTGCCTTCCTACGGGGCCGCCGGGACAAAGAAGACCCAGTTTTGTAAGCA
GCACGCGAAGCATGGAATGGTCAACGTCCGCAGTAAGAGATGTGCCCGGC
AAGGCTGCCCAAAAATCCCTTCGTTCGGTCGTGCGGGTACCAGGACGGCC
GTGTTCTGCGGCGAGCACGCTGAGGAAGCGATGGTGGACGTCTGCAGCAA
GAGGTGCGACCACCCCGGTTGCGGGAAGAACCCGTCCTACGGCGAGCCAG
GCACGAAGACCAAGAAATTCTGCAGGCAACACGCCGGGGCCCGGATGGTC
GCCGTCATAGGTAAGCGGTGCGCCATTCCGGGGTGCACCAACATGTCGGA
CTTTGGCCTGGAAGGCAGGAAAAATGTTGGATTTTGCCCGGACCACGCCA
ACGGGGCCCGGCCGGAGAACGTGGAGATCAACCTGAGCCGCAGGAAGTGC
GTCCACCCGGAAGGCTGCAACACGATCCCGTCCTTCGGCGAAGAGGGCAC
GAAGGCGGCGCGGTACTGCCGAACCCACGCCACAGAGGGCATGGTCGACG
TTTACCGCAAGAGGTGCGCCCACGCCGGCTGTACGATTCGGCGGTCTTTC
GGCGTACCTGGCAGCAAGAAGCCGGAGTTCTGCATGCAGCACGCCCAACC
CGGAATGGTTGACGTCGTGACCGGTCCCACCAAAAGGTGTAGCCTCCCGG
ACTGTATGACCAGGTCGTCATATGGCCTCGAAGGGACGAAAAAGCCTACG
CACTGCGCCCGGCATGCAACCGTGGGAATGGTGAACGTGAGCACCAAGAA
ATGTGGGCATCCAGAAGGTTGCAGCGCCGCTGCACTCTACGGCGAGGAAG
GCAGCAACAAGGAGGAGTTTTGCTCACACCACAAACGGCAGGGAATGGTG
AATGTACGCAATAAGGCCTGTGGCAGCCCGGGCTGCACCACGATGCCGTC
GTATGGCGCTTTGAACAGCAGGACGAGGGAGTTTTGCTCCAAGCACGCGA
AGGACGGCATGGTTCGCGTTTGTGACAATACGCGAAGGACCTGCGGCCAC
CCACATTGCTCGAAGTACCCTCACTTCGCCATGGCCGGCACCAAGCCGGG
GATATTCTGTGGCAAGCACGCGAGAGAAGGAATGGTCAACATTAGCAGCA
GCAAGAAATGCGCCCACCCAAACTGCCTCACGAGACCGTCGTACGGCGAA
CCAAGCAGCAACAAGGAGGAGTTCTGCATTACGCATGCGAAAGACGGGAT
GGTGCGCACGAGATCAAAGCGGTCCGCCGATGATAACGTCCGCGTTTTGA
CGGCGGGGGCCGCGAGACGGAAAAAGCGCGGCAAGCCATCGGCGCTCACC
GGGAATTCCATGCGGAAGGGAACGGCAGGCAGGAAGCTGCCCCGCCAGAT
TGCCGCGATAGCCCCGGCGGTAGATGGTCCGGTCAAGACAGAGATGTCCG
AGGAGGAGAGCTAAATGGTTTACATATGTGCGCAACCTGGCTGCACCAAG
CAGCCCTCGTACGGCGTCGCTGGGACCAAAAATTTTGAGTTTTGCACAGC
ACACGCCAAAGATGGGATGGTCGATGTTCGAAACAAGAGGTGTGCCGAAG
AAGGTTGCACCAAGGTGCCTTCCTACGGGGCCGCCGGGACAAAGAAGACC
CAGTTTTGTAAGCAGCACGCGAAGCATGGAATGGTCAACGTCCGCAGTAA
GAGATGTGCCCGGCAAGGCTGCCCAAAAATCCCTTCGTTCGGTCGTGCGG
GTACCAGGACGGCCGTGTTCTGCGGCGAGCACGCTGAGGAAGCGATGGTG
GACGTCTGCAGCAAGAGGTGCGACCACCCCGGTTGCGGGAAGAACCCGTC
CTACGGCGAGCCAGGCACGAAGACCAAGAAATTCTGCAGGCAACACGCCG
GGGCCCGGATGGTCGCCGTCATAGGTAAGCGGTGCGCCATTCCGGGGTGC
ACCAACATGTCGGACTTTGGCCTGGAAGGCAGGAAAAATGTTGGATTTTG
CCCGGACCACGCCAACGGGGCCCGGCCGGAGAACGTGGAGATCAACCTGA
GCCGCAGGAAGTGCGTCCACCCGGAAGGCTGCAACACGATCCCGTCCTTC
GGCGAAGAGGGCACGAAGGCGGCGCGGTACTGCCGAACCCACGCCACAGA
GGGCATGGTCGACGTTTACCGCAAGAGGTGCGCCCACGCCGGCTGTACGA
TTCGGCGGTCTTTCGGCGTACCTGGCAGCAAGAAGCCGGAGTTCTGCATG
CAGCACGCCCAACCCGGAATGGTTGACGTCGTGACCGGTCCCACCAAAAG
GTGTAGCCTCCCGGACTGTATGACCAGGTCGTCATATGGCCTCGAAGGGA
CGAAAAAGCCTACGCACTGCGCCCGGCATGCAACCGTGGGAATGGTGAAC
GTGAGCACCAAGAAATGTGGGCATCCAGAAGGTTGCAGCGCCGCTGCACT
CTACGGCGAGGAAGGCAGCAACAAGGAGGAGTTTTGCTCACACCACAAAC
GGCAGGGAATGGTGAATGTACGCAATAAGGCCTGTGGCAGCCCGGGCTGC
ACCACGATGCCGTCGTATGGCGCTTTGAACAGCAGGACGAGGGAGTTTTG
CTCCAAGCACGCGAAGGACGGCATGGTTCGCGTTTGTGACAATACGCGAA
GGACCTGCGGCCACCCACATTGCTCGAAGTACCCTCACTTCGCCATGGCC
GGCACCAAGCCGGGGATATTCTGTGGCAAGCACGCGAGAGAAGGAATGGT
CAACATTAGCAGCAGCAAGAAATGCGCCCACCCAAACTGCCTCACGAGAC
CGTCGTACGGCGAACCAAGCAGCAACAAGGAGGAGTTCTGCATTACGCAT
GCGAAAGACGGGATGGTGCGCACGAGATCAAAGCGGTCCGCCGATGATAA
CGTCCGCGTTTTGACGGCGGGGGCCGCGAGACGGAAAAAGCGCGGCAAGC
CATCGGCGCTCACCGGGAATTCCATGCGGAAGGGAACGGCAGGCAGGAAG
CTGCCCCGCCAGATTGCCGCGATAGCCCCGGCGGTAGATGGTCCGGTCAA
GACAGAGATGTCCGAGGAGGAGAGCTAA
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