mRNA_H-canaliculatus_F_contig1338.2747.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1338.2747.1
Unique NamemRNA_H-canaliculatus_F_contig1338.2747.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1338.2747.1 vs. uniprot
Match: D7G7F7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7F7_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.230e-85
Identity = 141/271 (52.03%), Postives = 177/271 (65.31%), Query Frame = 3 
Query:   99 MWPTRTPSRKRRPKLRPGTCFKATRLECEREQGKAVRVKAEEIHTVVDHDDPYLVPCINPDVRCFPRDPSSYEMRKIYTSSSFKVKPLPQHLKIEETENGTPIVDVEDGPLETAFFPPMRMVSGVGYRETNVANVLLGVDPSHW--HLWVTPVAFQLIKQVRDQVIEAGGVFISDFDTSASGWAVFHTMYICPAPSKSLYVQACRVESPLIECCGPGSGRVFAPLRCCGGRVFKEGFAPGSSDIFDPVVFKSIDRILDDSPSPGAIVAESD 905
            M  ++ P R+RR KL+PG C KA RLECER+    V V+A E+HTV+  DD +    INPD   F RDP SYE R+IY  SSF ++P  Q LK  ETE    I+ V D PLE   FPP+R   G G+RETN   V+ GVDPSH     WVTPVAF+LIK+V +QV  AGGVF +D+D S SGWA+FHT+YICPAP  ++YVQA RVE   ++CC  G   V  PL   GGR+F   F+P + D+ DPVVFK I R+L++ P   A+ A +D
Sbjct:    1 MSESKAPLRRRRSKLKPGMCLKAFRLECERDARGTVNVEAHEVHTVIGEDDKFSESYINPDDGFFRRDPLSYERRRIYERSSFNIQPPRQRLKALETETDAQIIHVSDEPLEPKRFPPLRKTPGEGFRETNATEVIFGVDPSHGCPRPWVTPVAFRLIKEVWEQVTNAGGVFTADYDLSKSGWAMFHTIYICPAPGTAMYVQAFRVEPKTVQCCSSGWNHVDRPLFRSGGRLFNADFSPINVDVLDPVVFKPIRRLLNNPP---ALTANAD 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1338.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7F7_ECTSI6.230e-8552.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1338contigH-canaliculatus_F_contig1338:11353..16416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000090.1
Exons3
Model size1457
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1338.2747.1prot_H-canaliculatus_F_contig1338.2747.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1338 13950..15873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.1538732-UTR-H-canaliculatus_F_contig1338:11352..114401622929076.1538732-UTR-H-canaliculatus_F_contig1338:11352..11440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 11353..11440 +
1696845670.664654-UTR-H-canaliculatus_F_contig1338:11352..114401696845670.664654-UTR-H-canaliculatus_F_contig1338:11352..11440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 11353..11440 +
1622929076.1739643-UTR-H-canaliculatus_F_contig1338:13939..139491622929076.1739643-UTR-H-canaliculatus_F_contig1338:13939..13949Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 13940..13949 +
1696845670.6732805-UTR-H-canaliculatus_F_contig1338:13939..139491696845670.6732805-UTR-H-canaliculatus_F_contig1338:13939..13949Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 13940..13949 +
1622929076.2203221-UTR-H-canaliculatus_F_contig1338:15873..164161622929076.2203221-UTR-H-canaliculatus_F_contig1338:15873..16416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 15874..16416 +
1696845670.7009673-UTR-H-canaliculatus_F_contig1338:15873..164161696845670.7009673-UTR-H-canaliculatus_F_contig1338:15873..16416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1338 15874..16416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929076.193168-CDS-H-canaliculatus_F_contig1338:13949..144201622929076.193168-CDS-H-canaliculatus_F_contig1338:13949..14420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 13950..14420 +
1696845670.6836433-CDS-H-canaliculatus_F_contig1338:13949..144201696845670.6836433-CDS-H-canaliculatus_F_contig1338:13949..14420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 13950..14420 +
1622929076.2049928-CDS-H-canaliculatus_F_contig1338:15528..158731622929076.2049928-CDS-H-canaliculatus_F_contig1338:15528..15873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 15529..15873 +
1696845670.6924086-CDS-H-canaliculatus_F_contig1338:15528..158731696845670.6924086-CDS-H-canaliculatus_F_contig1338:15528..15873Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1338 15529..15873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1338.2747.1

>prot_H-canaliculatus_F_contig1338.2747.1 ID=prot_H-canaliculatus_F_contig1338.2747.1|Name=mRNA_H-canaliculatus_F_contig1338.2747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=272bp
MWPTRTPSRKRRPKLRPGTCFKATRLECEREQGKAVRVKAEEIHTVVDHD
DPYLVPCINPDVRCFPRDPSSYEMRKIYTSSSFKVKPLPQHLKIEETENG
TPIVDVEDGPLETAFFPPMRMVSGVGYRETNVANVLLGVDPSHWHLWVTP
VAFQLIKQVRDQVIEAGGVFISDFDTSASGWAVFHTMYICPAPSKSLYVQ
ACRVESPLIECCGPGSGRVFAPLRCCGGRVFKEGFAPGSSDIFDPVVFKS
IDRILDDSPSPGAIVAESDYT*
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mRNA from alignment at H-canaliculatus_F_contig1338:11353..16416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1338.2747.1 ID=mRNA_H-canaliculatus_F_contig1338.2747.1|Name=mRNA_H-canaliculatus_F_contig1338.2747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5064bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1338:11353..16416+ (Hapterophycus canaliculatus Oshoro5f female)
ACGGGAGCCATTTCTGTCTCTATTGGGTGAGGGGCTCCACCATTGCCGAG
GGGACACGCCAAACTTCTGATTCCGACACTGACACGAGGCAAGCGATAAT
TTTAGCGGCAAGTGCACGACGAGAGAGTATCGGTAGATACATGGATAGGA
AGATTTTCGAACGATGATGCCAAACCTTTGACGTTTTGAGGAAGCATGGT
GAAGAGATGCCCCAGCGCTTGTGACACAAACAGGTGGCGCAAGTTGTCGC
AGCTCGAGCTGAGCAGCGATCCTCCCTCTCGTTGCGAGCTTTTCGGTGAT
ATAAGTTCCGAAGTCCTTGTCGTCAATAATGTGCACAAGAAGGGACCACA
GGAGCATAGTTGAGCATGAATTTTGGTTCCGATGCTGGAAGGTAGGCCGA
CCGGCTCGAATTGTGTCGATTGGATTTACAACCCACAGGCTGTTGTGTGC
GAGGTTGCTGTGTAGCTCTTCCTCGCCTTTTCGGGTGGTCGCTTTTCGGG
CGGAAAGCGTGTTGTCGTCGCGCCATTTCAGCAAACACCCCGGCGCGAAA
GCTGGTGCAGCACGCAGCGTGCAGTCCTTCTTCAGATGTGGTCTGCCATC
GGACAGAGGGTTCATCCTCTTTTATTTGTTTGCGTCACGTCAACGTATCA
ACAATAGAGCGTGAGTCCACTGGCAGAAAGTGGTGGTTGTAGAGACCTTC
ATTTGCGTCAGCTCGCGAATGTCGCCCAGAAAGGGTTAGGCTGTCTACGC
AAACATGAGCAACATGAGCCTGCTGAGAGTACGAGAGAGAAGAAACAGAG
AGAGAGAGAGCGGGAGAGAGAGAGAGAGAGAGAACAGGCACAAACGCTTG
CGTACGGAATAACGGCAGAAGAGGTTGCTGTGTGTCCGACAGCAGCAGTA
CAGCTCGTGGGCTTTTTCGGAGACTACAGGGATCAGAAACAAGATGCAAC
AGCTAAATACTCTCAGTACGTCACCGACTGATCACCCACGAGCAGTTTAT
TGACTAACGCTTTGGGGGCGAACAGTGAGGGCAAGCGAAAGCTAGTATTT
AAACGCGTGTACACTCGTACGCTATCATATGTGGGTCAACCGTCGGAAAC
ACAGAAAAAGGAAATACCCCGCTCCGCCGTTCGGAATTGTGGTTCGAAAA
AGGTTCGGAAACTGTTCTAAAATGATGTCAACGTGTTTGCAACTTGCACA
TACAGTGCTGTGTGTTGCCTCTCGGAGAGGGTGCCTTTTGTGCCGCATTT
TGGGATATTCCCTGCAAACTCACATGCTGCAAGCGTTCCCTACAGACACT
GATGCCACCAATCTCAGCTTCAGGGCTTCTGTACACAGTTAGATTGCCAG
AGGATTACATGTTTGCATGAAATCAAGCTCCGAAATAGCTCCCTGCCATT
TTCCACTTTTCGCACCCCTGCTCCATACTCCAGCACGAAGTATATCGCCA
AGTTAGATGGTCTGCAGACGCTGTAGACTGCTGCTGTACCAGCTTTACTC
CCCTGACTTGCGTCCTTGGAGTAAGACGCGCATTCTCGACCGCTGTGGAG
GCTTGCAGACCGTTGAAAACATGTCCACCGGTTTCATCTATGTACGTACC
CCCTATTTCCTCGATTATGTTCTTTTTGACGCTACAGCAGTAAGTGGTTG
TTCAGCCAAGGTGCGTGCGCCCTTTTCACGAAGGATTGCTTGTAACGATT
TTCGCACCTCCTTACGCAAACGATTCTCCCGCAATTGACATATGAAACAA
AAATAAGTGTGTTTCTCCACGAACCCTACATATTTCACCGGGTCTCACGG
TCTGTTCATTGTTTCATGCCGTCCAAGACCCATACTTGTACAGTGCTTGT
ATCGAAACCTGTACAATGCTTGTATCGAACCCTCACACGTGAACTCTACG
GAATTTAAACAACAGCCTCCCGAGGAGCCTCTTGAAACATGGCCGGGAAG
ATTTCCCTTCGTTCTTGAATTTTTTTTATCTTCAAACATGCATGGAATTG
TCGTTTGTTTGTGTTCTATTCACCGAAGCAATTCTGCCACACGAAGCACA
GCAGCAGGCATGCGCGCCTATTATTGGAGATCCTTTCACGGACACTACTG
CATGTGTCTTTCTGTTTCACAGCAAGCGCGGCCAACTTTCATCCCGACGA
GGATACGAAAGAAAGAGGACAAAAACGGGGCGTGATTTTCTTGGGCTACT
GTATGACTCACCCGAAACTGCTAAAAATATGGGATTCTTCTTGGCTCCGT
GGATGGGCACTTACTTTCACAAATTTAAGTTCGTCATTTCAAAACTCATC
AAACACCAAGGTATTTGGAACGCATCTCATACCGGTCTACGTGCGGAAAG
GACCGCTGCCTGTGATAGGACTTTCGTTGAGAGTGTAAACGGGCTACGTG
CTGATGCAGACAACATCAGCAAAGCTGAAATCAATTACGAACGACGGAAA
CCGTATGTGATAAAAGCTGCTCGAAGATTGACCAAGGATGGTGAGGCATG
AATATAATATAGGCTGAACAGCCGAATCCCTCGAAAGAGTGACCGACCCT
GAATCCTGACGTTTGCAACTCCTGCACCAACAACCAGATATTCAAATATG
TGGCCAACTAGGACGCCGTCGCGGAAAAGACGGCCAAAGCTACGGCCGGG
CACGTGCTTCAAGGCCACTCGGCTTGAGTGTGAACGGGAACAGGGAAAAG
CCGTTAGAGTGAAGGCTGAAGAGATACACACCGTCGTGGATCATGACGAC
CCCTACCTGGTGCCCTGCATCAATCCGGACGTTAGATGCTTCCCACGAGA
TCCATCCTCGTACGAAATGAGGAAGATATACACCTCCTCTTCCTTCAAAG
TAAAGCCTCTACCTCAGCACCTGAAAATCGAGGAGACTGAAAACGGCACG
CCGATCGTTGACGTTGAGGACGGTCCACTTGAAACGGCCTTTTTTCCACC
GATGAGGATGGTGTCTGGCGTAGGATATCGCGAGACCAATGTGGCCAACG
TTCTCCTCGGGGTGGATCCAAGTCACTGGCACTTATGGGTGACTCCCGTT
GCTTTCCAGCTCATTAAGGTGAGTAACATTGATTTCGGCTCTCGCGCAGA
TTGAATTGGGCATAGATTGAATCTCGACGAGCCTAGATTACTAAGAGCCG
GGTGTGCACGTGGTTCTGTAAATTATTATGTTGTAGTAGCCAAGAACGCT
TCTTGCAGCGCTGAAAATGGCGGCGTGACAGCAGCTTGCCCGGACGAAGG
GCACAGACATCTGCTTTGGAAAGGTATACAAGGAAGCTGCGGTGCACGAG
CGGTGCGGCGAAGCGCATTTCACTACAAAGACAGCCCGTACTTTCGGCGA
GATGGTCGCAGGACGCCCCCACCCGGACAACTCTGAGGGTACGATGTTGT
TGAGTGCCGACGCTTAGATTGCGTTTCCAGACTTCCCCATATCGTTCTGG
GTAGTCGTGCTGACGACCTTTGGAGCACATCGGCGCCAAGCTGGATGCTT
AAAGCAACCTGCTTTGGGTATTATTGTAATGAGTACTCACGCAGGTGGTA
GCAGAGGCTGACGCCTACCGACGAAAGTTGGGTGCGGCAGCTCGAAGAGC
CTGTATAGCACGTGAAGTACGACGGTACTTCAGTGCAGGAGACGAAACTT
CTATGTTGCAAACACGGCACTTCCAGCAAACACACACTAACGTATAACAG
AGACACTGGTGGTAGTCCAGTCAGGACGATGGTAGTATCCACTGATAGAA
AGGTGGCCAGTACCTAGACGATCCACGGAGATCGCAACGAGTAAGGCAAA
ACACCATACGAGATATATACTTCAGTCCTTACGGTAACACTTTTCCTGCA
GATATCTCGGCGTACGTTACCGACTTCCCATGGCACCGCTGGATATATAA
TATGGAACAACAATGCTACTGAACATCGAATACAGACGTAAGAGAATGCG
TCCGTATTTCCAGAACACAGTGGTGCCTGGCTGCGGTAGTTGCCCTGTTG
AGAGAAGCACTGGAGTTTGCAGAAACTTTGAAAGGTTGGCTAGTTCGGGG
GCGACCCTGACTGCTCATCCCACCAAAGACTGTTGCTAGTTTCAATAGCC
TGAACCCAAGCTGCATGTCTCACCAGGGACTCTTGGTCGCTTGAACTACC
TTTCTGCCTGGGATTTCGTCTCGAAGCAAGTAAGAGACCAGGTGATCGAA
GCTGGAGGAGTGTTCATCTCCGATTTCGACACGAGCGCGTCTGGCTGGGC
CGTTTTCCACACGATGTATATCTGTCCGGCGCCGTCCAAGTCGCTGTACG
TGCAAGCGTGCAGGGTGGAGTCGCCGTTGATCGAGTGCTGCGGACCAGGA
TCAGGTCGCGTGTTTGCTCCGTTGCGCTGTTGTGGGGGTAGGGTTTTTAA
AGAAGGCTTTGCACCGGGCAGCTCCGATATCTTCGACCCTGTTGTTTTCA
AGTCAATTGACAGAATACTGGATGACTCCCCATCCCCGGGCGCCATCGTT
GCCGAGTCAGATTATACTTGATGGATCACCAACTCCTGGCACTGTCGTTG
CCGAGTCGCCCTAGTAGAGCTGTGGAACAAGTGCTGTCTTAGAATTGCTA
TGCCCTTCGGTGCCTTCAAAACGTGTTTCTAGATTAGTTCGTTTCGGGCG
TATGCTCCTACGAAAAAGGTGGATTACACTTTCCTGGAATGGCATGGCGG
AAATAGACACGAGGGCCTCGTGTAAATTATGTTCCTGTGCTTCGACCGCC
ACTCGAATTATTGTTGCAACTCGCACGAAAAGTGAACCGTTCAGAGCAGT
TGTGGTGGAACTCACACGTCGCGTGACATCAACGGCTCACGTACATGGAC
TCGAGATGTTTTTGCGAGAGGGACGAGAAGGCAGGCCAACTTGATGACGT
GGACAAGAACAGCTTGTGGCTTATTCCATGAAAGCGCAAGCCCAAGCGTG
CGGCAGTTTATGTAGTCAACGCCAATGAGTATAGAGCAAGCCTTCAGTGG
TGGTGTCGCGGAGAGGTTGGCGGTGGCCTGGGTCGCCACCGGTAAATTAA
GCACCTTCGTTTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1338:11353..16416+

>mRNA_H-canaliculatus_F_contig1338.2747.1 ID=mRNA_H-canaliculatus_F_contig1338.2747.1|Name=mRNA_H-canaliculatus_F_contig1338.2747.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1632bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1338:11353..16416+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGCCAACTAGGACGCCGTCGCGGAAAAGACGGCCAAAGCTACGGCC
GGGCACGTGCTTCAAGGCCACTCGGCTTGAGTGTGAACGGGAACAGGGAA
AAGCCGTTAGAGTGAAGGCTGAAGAGATACACACCGTCGTGGATCATGAC
GACCCCTACCTGGTGCCCTGCATCAATCCGGACGTTAGATGCTTCCCACG
AGATCCATCCTCGTACGAAATGAGGAAGATATACACCTCCTCTTCCTTCA
AAGTAAAGCCTCTACCTCAGCACCTGAAAATCGAGGAGACTGAAAACGGC
ACGCCGATCGTTGACGTTGAGGACGGTCCACTTGAAACGGCCTTTTTTCC
ACCGATGAGGATGGTGTCTGGCGTAGGATATCGCGAGACCAATGTGGCCA
ACGTTCTCCTCGGGGTGGATCCAAGTCACTGGCACTTATGGGTGACTCCC
GTTGCTTTCCAGCTCATTAAGATGTGGCCAACTAGGACGCCGTCGCGGAA
AAGACGGCCAAAGCTACGGCCGGGCACGTGCTTCAAGGCCACTCGGCTTG
AGTGTGAACGGGAACAGGGAAAAGCCGTTAGAGTGAAGGCTGAAGAGATA
CACACCGTCGTGGATCATGACGACCCCTACCTGGTGCCCTGCATCAATCC
GGACGTTAGATGCTTCCCACGAGATCCATCCTCGTACGAAATGAGGAAGA
TATACACCTCCTCTTCCTTCAAAGTAAAGCCTCTACCTCAGCACCTGAAA
ATCGAGGAGACTGAAAACGGCACGCCGATCGTTGACGTTGAGGACGGTCC
ACTTGAAACGGCCTTTTTTCCACCGATGAGGATGGTGTCTGGCGTAGGAT
ATCGCGAGACCAATGTGGCCAACGTTCTCCTCGGGGTGGATCCAAGTCAC
TGGCACTTATGGGTGACTCCCGTTGCTTTCCAGCTCATTAAGCAAGTAAG
AGACCAGGTGATCGAAGCTGGAGGAGTGTTCATCTCCGATTTCGACACGA
GCGCGTCTGGCTGGGCCGTTTTCCACACGATGTATATCTGTCCGGCGCCG
TCCAAGTCGCTGTACGTGCAAGCGTGCAGGGTGGAGTCGCCGTTGATCGA
GTGCTGCGGACCAGGATCAGGTCGCGTGTTTGCTCCGTTGCGCTGTTGTG
GGGGTAGGGTTTTTAAAGAAGGCTTTGCACCGGGCAGCTCCGATATCTTC
GACCCTGTTGTTTTCAAGTCAATTGACAGAATACTGGATGACTCCCCATC
CCCGGGCGCCATCGTTGCCGAGTCAGATTATACTTGACAAGTAAGAGACC
AGGTGATCGAAGCTGGAGGAGTGTTCATCTCCGATTTCGACACGAGCGCG
TCTGGCTGGGCCGTTTTCCACACGATGTATATCTGTCCGGCGCCGTCCAA
GTCGCTGTACGTGCAAGCGTGCAGGGTGGAGTCGCCGTTGATCGAGTGCT
GCGGACCAGGATCAGGTCGCGTGTTTGCTCCGTTGCGCTGTTGTGGGGGT
AGGGTTTTTAAAGAAGGCTTTGCACCGGGCAGCTCCGATATCTTCGACCC
TGTTGTTTTCAAGTCAATTGACAGAATACTGGATGACTCCCCATCCCCGG
GCGCCATCGTTGCCGAGTCAGATTATACTTGA
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