mRNA_H-canaliculatus_F_contig1337.2742.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1337.2742.1
Unique NamemRNA_H-canaliculatus_F_contig1337.2742.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: D7FVC7_ECTSI (CTR-like PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC7_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.600e-29
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDETERLLEELLRQSTSATCTTEESKEMDNTGDCLDDLLQK 287
            +F+R++PF+G E ++I E VVSGGRPTVPRGD P  I  LMCRCWSE+P QRP F E E +L+ELL  + +AT    E +  + TGDCLDDLL+K
Sbjct:  217 IFSREIPFNGFEVADIREAVVSGGRPTVPRGDCPREISSLMCRCWSENPQQRPAFGEIEEILQELLLSTAAAT----ELEGTETTGDCLDDLLRK 307
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A0A820CEQ6_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A820CEQ6_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 6.460e-9
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:   33 LEASEIVETVVSGG--RPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDETERLLEELLRQSTSATCTTEESKEMDNTGDCLDDLLQK 287
            LE S IVE V SG   RP++  G+  S I HLM RCWSEDP++RP F +  +++  + +   S        K M+   + L+ L+++
Sbjct:  629 LEPSAIVENVKSGSLLRPSIEAGECNSEIVHLMKRCWSEDPNERPDFTDIRQVMRRINKDGESGNILDNLLKRMEQYANNLEGLVEE 715
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: F4PRV4_CAVFA (PKC domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRV4_CAVFA)

HSP 1 Score: 58.5 bits (140), Expect = 1.060e-7
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQF 167
            MFTRK+PF G+   E +  V+ GGRPT+P    P  + +L+ +CW  +PS RP F
Sbjct:  548 MFTRKIPFEGMNEFERINFVLKGGRPTIP-DTVPIKLANLIRQCWDSNPSARPTF 601
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A2E4X6_TRIVA (TKL family protein kinase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2E4X6_TRIVA)

HSP 1 Score: 57.4 bits (137), Expect = 2.690e-7
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDETERLL 188
            M T  +PF   + +EI + V++G RP +P  D P  I+HL+ RCWS++PS+RP F +  + L
Sbjct:  214 MLTETMPFIKYKDAEIAKMVLAGKRPKLP-DDTPRKIKHLVTRCWSQNPSERPTFSDIVKEL 274
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A0A1Y1HIF8_KLENI (ATMRK serine/threonine protein kinase-like domain n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HIF8_KLENI)

HSP 1 Score: 55.8 bits (133), Expect = 9.190e-7
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETVVSGG-RPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDETERLLEELLR 203
            + T K+P+S L   +    VV  G RPT+P+   P  +  +M RCWS +PS+RP+F E  +LL++ L+
Sbjct:  494 LLTGKLPYSDLTPLQAAVGVVQKGLRPTIPKTCHPK-LAEVMHRCWSTNPSERPEFSEVTKLLQDALK 560
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A2EVH8_TRIVA (TKL family protein kinase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2EVH8_TRIVA)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETVV-SGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDETERLL 188
            + T K+P++G++A  +   VV    RP +P+   P+ +++L+CRCW +DP+QRP F E  RL 
Sbjct:  216 LLTFKLPWAGMDALAVTRAVVIEKKRPILPK--CPAPLKNLICRCWDQDPNQRPTFAEIYRLF 276
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A9TM14_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TM14_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 2.180e-6
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:    3 MFTRKVPFSGL-EASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDE 173
            + T  VPF  + + +E+ + V+ G RP +P+ D P+ +E L+ RCWS+D S RP+FDE
Sbjct:   93 ILTGDVPFYDIAQHNEVKKKVLKGDRPGLPK-DCPTSLERLIRRCWSQDASARPRFDE 149
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A0A1J4KAU2_9EUKA (Protein kinase domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KAU2_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 2.420e-6
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    3 MFTRKVPFSGLEASEIVETV-VSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDE 173
            M T+K+PF  L+ ++++  V +   RP +P  D P  +  +M +CWSE+PS+RP F+E
Sbjct:  219 MITKKLPFDNLQPAQVIFAVLIDHKRPPIP-SDTPQALSEVMQQCWSENPSERPPFEE 275
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BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A9T613_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T613_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 6.610e-6
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:    3 MFTRKVPFSGL-EASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDE 173
            + T  VPF  + + +E+ + V+ G RP +P+ D P+ +E L+ RCWS+D S RP+FDE
Sbjct:  209 ILTGDVPFYDIAQHNEVKKKVLKGDRPGLPK-DCPTSLERLIRRCWSQDASARPRFDE 265
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Match: A0A2K1LAD5_PHYPA (Protein kinase domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LAD5_PHYPA)

HSP 1 Score: 53.1 bits (126), Expect = 8.090e-6
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:    3 MFTRKVPFSGL-EASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPSQRPQFDE 173
            + T  VPF  + + +E+ + V+ G RP +P+ D P+ +E L+ RCWS+D S RP+FDE
Sbjct:  440 ILTGDVPFYDIAQHNEVKKKVLKGDRPGLPK-DCPTSLERLIRRCWSQDASARPRFDE 496
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1337.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVC7_ECTSI1.600e-2957.89CTR-like PK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A820CEQ6_9BILA6.460e-936.78Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
F4PRV4_CAVFA1.060e-745.45PKC domain-containing protein n=1 Tax=Cavenderia f... [more]
A2E4X6_TRIVA2.690e-741.94TKL family protein kinase n=1 Tax=Trichomonas vagi... [more]
A0A1Y1HIF8_KLENI9.190e-739.71ATMRK serine/threonine protein kinase-like domain ... [more]
A2EVH8_TRIVA1.300e-639.68TKL family protein kinase n=1 Tax=Trichomonas vagi... [more]
A9TM14_PHYPA2.180e-643.10Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A1J4KAU2_9EUKA2.420e-639.66Protein kinase domain-containing protein n=1 Tax=T... [more]
A9T613_PHYPA6.610e-643.10Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A0A2K1LAD5_PHYPA8.090e-643.10Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1337contigH-canaliculatus_F_contig1337:17690..18742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.5e-08
Seed eggNOG ortholog4792.ETI57301
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3Q71I@4776,COG0515@1,KOG0192@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCTR-like protein kinase
Ec32 orthologEc-14_000610.1
Exons3
Model size329
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1337.2742.1prot_H-canaliculatus_F_contig1337.2742.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1337 17729..18740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.4851248-UTR-H-canaliculatus_F_contig1337:17689..177281622929075.4851248-UTR-H-canaliculatus_F_contig1337:17689..17728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 17690..17728 -
1696845670.3864858-UTR-H-canaliculatus_F_contig1337:17689..177281696845670.3864858-UTR-H-canaliculatus_F_contig1337:17689..17728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 17690..17728 -
1622929075.5464563-UTR-H-canaliculatus_F_contig1337:18740..187421622929075.5464563-UTR-H-canaliculatus_F_contig1337:18740..18742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 18741..18742 -
1696845670.4331481-UTR-H-canaliculatus_F_contig1337:18740..187421696845670.4331481-UTR-H-canaliculatus_F_contig1337:18740..18742Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1337 18741..18742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929075.5008712-CDS-H-canaliculatus_F_contig1337:17728..177761622929075.5008712-CDS-H-canaliculatus_F_contig1337:17728..17776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 17729..17776 -
1696845670.3978136-CDS-H-canaliculatus_F_contig1337:17728..177761696845670.3978136-CDS-H-canaliculatus_F_contig1337:17728..17776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 17729..17776 -
1622929075.515793-CDS-H-canaliculatus_F_contig1337:18385..185441622929075.515793-CDS-H-canaliculatus_F_contig1337:18385..18544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 18386..18544 -
1696845670.407108-CDS-H-canaliculatus_F_contig1337:18385..185441696845670.407108-CDS-H-canaliculatus_F_contig1337:18385..18544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 18386..18544 -
1622929075.5341463-CDS-H-canaliculatus_F_contig1337:18659..187401622929075.5341463-CDS-H-canaliculatus_F_contig1337:18659..18740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 18660..18740 -
1696845670.4221437-CDS-H-canaliculatus_F_contig1337:18659..187401696845670.4221437-CDS-H-canaliculatus_F_contig1337:18659..18740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1337 18660..18740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1337.2742.1

>prot_H-canaliculatus_F_contig1337.2742.1 ID=prot_H-canaliculatus_F_contig1337.2742.1|Name=mRNA_H-canaliculatus_F_contig1337.2742.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MFTRKVPFSGLEASEIVETVVSGGRPTVPRGDFPSGIEHLMCRCWSEDPS
QRPQFDETERLLEELLRQSTSATCTTEESKEMDNTGDCLDDLLQK*
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mRNA from alignment at H-canaliculatus_F_contig1337:17690..18742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1337.2742.1 ID=mRNA_H-canaliculatus_F_contig1337.2742.1|Name=mRNA_H-canaliculatus_F_contig1337.2742.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1053bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1337:17690..18742- (Hapterophycus canaliculatus Oshoro5f female)
AGATGTTTACTCGCAAGGTGCCTTTCAGCGGACTTGAAGCGTCGGAAATT
GTGGAAACCGTGGTTTCTGGCGGGCGTCCCACGGTATGTTGATAGGGCTT
CGGGACGAATGTGCGCATTGAAAAGCTGACATGCCGTAGGGCCGAGTTCA
TAACGCAAGAAAGCTCAGATCGATTTACCCGTGCCTGATCAACCTCAGGT
GCCCCGCGGAGACTTCCCTTCCGGAATTGAGCATTTGATGTGTCGGTGTT
GGAGTGAAGACCCGTCGCAACGACCCCAATTTGACGAAACAGAACGCTTG
TTAGAAGAACTTCTGAGACAATCGACATCGGCTACTTGTACGACGGAGGA
GTCAAAGGTAAATGATACACCAACTCCAGGAATCGCGAAAAACAAGTCCA
CAAATGTTTGCGGTTTCCGTTTGTGGTAGGCAAGTGAAATGTTCGATGGA
GAAACCTGAAAACATGTGCTTAATCCACTGCTGCTCGTTGTAAGGGGGCT
CTGGAAACTGTTTGAGGTCAACGTTTTGGAGGGGGAAACTGCAACAAGCA
CAAAAATTTGCCTGCAGATGGCATCTCCGAAGGAAACTTTCAACTCTGAG
TGGACGAGCGCCGACGTGGTGTCGATGGCTCTACACATTCTTAAAGGCCT
GCAAGGGGTACCTCGTGAAATAACCGTCATTGCATGTCTCGAACATTTTA
ACCCTGTTGTAATCGGCGACATAAAAACCTCGCAATATGTAGTGAAACCT
CGCTACTTTTGAACTTCAGATACGCACTTCAAGGTTTCGAACCTTTTTGA
AGAGTCTCCAGATTAATATCATAAAGCGAAAATTCGCCGTAGATACTTTT
TGGGGGCCATTTACCACACTGAGTGATGAAAGCTCAATTGCTGACGTCGC
CTGTCGCGCAGATTAGGCCTTCTGATGGCAAAACGATCTCCTGCTCACTT
GTTCGTACGTGTACAGGAAATGGACAACACAGGAGACTGCCTTGATGACC
TACTCCAGAAATAGGGCCAGTACTTCTTGCTTGCTGGCCTCAAGAAGTGT
GGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1337:17690..18742-

>mRNA_H-canaliculatus_F_contig1337.2742.1 ID=mRNA_H-canaliculatus_F_contig1337.2742.1|Name=mRNA_H-canaliculatus_F_contig1337.2742.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1337:17690..18742- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTACTCGCAAGGTGCCTTTCAGCGGACTTGAAGCGTCGGAAATTGT
GGAAACCGTGGTTTCTGGCGGGCGTCCCACGATGTTTACTCGCAAGGTGC
CTTTCAGCGGACTTGAAGCGTCGGAAATTGTGGAAACCGTGGTTTCTGGC
GGGCGTCCCACGGTGCCCCGCGGAGACTTCCCTTCCGGAATTGAGCATTT
GATGTGTCGGTGTTGGAGTGAAGACCCGTCGCAACGACCCCAATTTGACG
AAACAGAACGCTTGTTAGAAGAACTTCTGAGACAATCGACATCGGCTACT
TGTACGACGGAGGAGTCAAAGGTGCCCCGCGGAGACTTCCCTTCCGGAAT
TGAGCATTTGATGTGTCGGTGTTGGAGTGAAGACCCGTCGCAACGACCCC
AATTTGACGAAACAGAACGCTTGTTAGAAGAACTTCTGAGACAATCGACA
TCGGCTACTTGTACGACGGAGGAGTCAAAGGAAATGGACAACACAGGAGA
CTGCCTTGATGACCTACTCCAGAAATAGGAAATGGACAACACAGGAGACT
GCCTTGATGACCTACTCCAGAAATAG
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