mRNA_H-canaliculatus_F_contig13367.2740.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13367.2740.1
Unique NamemRNA_H-canaliculatus_F_contig13367.2740.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13367.2740.1 vs. uniprot
Match: A0A6H5LBL5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBL5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.540e-13
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = -2 
Query:    9 GPTGVSARNKEEGDGDDDGEVGRADPVAGRDGEWGWDWGGRGLVPALARGEGMGGQGGAVARIGVNGEGALPXXXXXPFALGPFGARGSFD 281
            GPTG ++RN+E     ++  V  AD V GRDGEWGWD GGRGL P    G    G      R+G+N EG LP     PFAL PFG RGSFD
Sbjct:  361 GPTGDNSRNRE-----NEAAVVAADAVGGRDGEWGWDCGGRGLFPPSLTGAADSG----AVRLGINDEGPLPALPALPFALEPFGVRGSFD 442
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13367.2740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBL5_9PHAE1.540e-1351.65Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13367contigH-canaliculatus_F_contig13367:1145..1659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.8151796-CDS-H-canaliculatus_F_contig13367:1144..16571622929074.8151796-CDS-H-canaliculatus_F_contig13367:1144..1657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13367 1145..1657 +
1696845670.181216-CDS-H-canaliculatus_F_contig13367:1144..16571696845670.181216-CDS-H-canaliculatus_F_contig13367:1144..1657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13367 1145..1657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13367.2740.1prot_H-canaliculatus_F_contig13367.2740.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13367 1145..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13367.2740.1

>prot_H-canaliculatus_F_contig13367.2740.1 ID=prot_H-canaliculatus_F_contig13367.2740.1|Name=mRNA_H-canaliculatus_F_contig13367.2740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
SGSSNDPRAPNGPRANGRAGRAGRAPSPLTPMRATAPPWPPIPSPLARAG
TRPLPPQSQPHSPSLPATGSARPTSPSSSPSPSSLFRALTPVGPESPAVV
FGRAAREPSAPHPVPEEAAAAAVLVLSTAAPSPNAGAGSGAVAVWTGCSC
RWWWTAVDSLATLPPFAADCS
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mRNA from alignment at H-canaliculatus_F_contig13367:1145..1659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13367.2740.1 ID=mRNA_H-canaliculatus_F_contig13367.2740.1|Name=mRNA_H-canaliculatus_F_contig13367.2740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=515bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13367:1145..1659+ (Hapterophycus canaliculatus Oshoro5f female)
TCGGGTTCGTCGAACGACCCGCGCGCGCCGAACGGGCCCAGGGCAAACGG
GAGGGCGGGCAGGGCCGGGAGGGCACCTTCGCCGTTGACGCCGATGCGGG
CGACCGCCCCGCCCTGGCCGCCCATCCCCTCCCCCCTGGCCAGAGCCGGG
ACGAGGCCCCTGCCGCCCCAGTCCCAGCCCCACTCGCCGTCTCTGCCTGC
AACCGGATCCGCGCGACCCACCTCCCCGTCGTCGTCGCCGTCACCTTCCT
CCTTGTTTCGTGCGCTTACGCCCGTCGGCCCCGAGTCGCCCGCGGTGGTG
TTCGGACGCGCGGCCCGTGAGCCATCGGCGCCGCACCCGGTACCGGAGGA
AGCGGCAGCGGCGGCGGTGCTTGTCCTTTCCACCGCCGCCCCGTCTCCCA
ACGCCGGAGCAGGCTCCGGCGCCGTTGCTGTGTGGACGGGCTGCTCTTGC
CGGTGGTGGTGGACGGCGGTCGACTCCCTCGCCACTCTTCCGCCGTTCGC
CGCGGACTGCTCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13367:1145..1659+

>mRNA_H-canaliculatus_F_contig13367.2740.1 ID=mRNA_H-canaliculatus_F_contig13367.2740.1|Name=mRNA_H-canaliculatus_F_contig13367.2740.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13367:1145..1659+ (Hapterophycus canaliculatus Oshoro5f female)
TCGGGTTCGTCGAACGACCCGCGCGCGCCGAACGGGCCCAGGGCAAACGG
GAGGGCGGGCAGGGCCGGGAGGGCACCTTCGCCGTTGACGCCGATGCGGG
CGACCGCCCCGCCCTGGCCGCCCATCCCCTCCCCCCTGGCCAGAGCCGGG
ACGAGGCCCCTGCCGCCCCAGTCCCAGCCCCACTCGCCGTCTCTGCCTGC
AACCGGATCCGCGCGACCCACCTCCCCGTCGTCGTCGCCGTCACCTTCCT
CCTTGTTTCGTGCGCTTACGCCCGTCGGCCCCGAGTCGCCCGCGGTGGTG
TTCGGACGCGCGGCCCGTGAGCCATCGGCGCCGCACCCGGTACCGGAGGA
AGCGGCAGCGGCGGCGGTGCTTGTCCTTTCCACCGCCGCCCCGTCTCCCA
ACGCCGGAGCAGGCTCCGGCGCCGTTGCTGTGTGGACGGGCTGCTCTTGC
CGGTGGTGGTGGACGGCGGTCGACTCCCTCGCCACTCTTCCGCCGTTCGC
CGCGGACTGCTCCTCGGGTTCGTCGAACGACCCGCGCGCGCCGAACGGGC
CCAGGGCAAACGGGAGGGCGGGCAGGGCCGGGAGGGCACCTTCGCCGTTG
ACGCCGATGCGGGCGACCGCCCCGCCCTGGCCGCCCATCCCCTCCCCCCT
GGCCAGAGCCGGGACGAGGCCCCTGCCGCCCCAGTCCCAGCCCCACTCGC
CGTCTCTGCCTGCAACCGGATCCGCGCGACCCACCTCCCCGTCGTCGTCG
CCGTCACCTTCCTCCTTGTTTCGTGCGCTTACGCCCGTCGGCCCCGAGTC
GCCCGCGGTGGTGTTCGGACGCGCGGCCCGTGAGCCATCGGCGCCGCACC
CGGTACCGGAGGAAGCGGCAGCGGCGGCGGTGCTTGTCCTTTCCACCGCC
GCCCCGTCTCCCAACGCCGGAGCAGGCTCCGGCGCCGTTGCTGTGTGGAC
GGGCTGCTCTTGCCGGTGGTGGTGGACGGCGGTCGACTCCCTCGCCACTC
TTCCGCCGTTCGCCGCGGACTGCTCC
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