mRNA_H-canaliculatus_F_contig1336.2734.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1336.2734.1
Unique NamemRNA_H-canaliculatus_F_contig1336.2734.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1336.2734.1 vs. uniprot
Match: D7G1K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 7.840e-39
Identity = 138/294 (46.94%), Postives = 159/294 (54.08%), Query Frame = 1 
Query:    1 GNRGSVVVLYIMAALVGILVSYMASGKRMDVGKASTTLIVRKVEGLWRLPFGGGVFEALCEGVGQCWRGLCRRCXXXXXXXSDRGQASSEETETPNFSNRKTYGHTAVATAAGEETRLILPPGVGDIEKPRRLRRPH-RGSSNGPPGG------RSSSVSSRGTAKDASDRYDNGEVSRPRARSDSDRSSGGYGDGSAAENGYAPPPGSPSAAAHLVSGEADRSSGVSGARITAYGSA-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQILATSAVDAVAAAAKLAEEIAKDN 858
            G+R   V++YIMAALVGILVSY+ S           TLIVRKVEGLWRLPFGGGVFEALCEG  QCWRG  R  XXXXXXX      S  + + P+FS RK YG+T+   AAGE  RLI P   GD E+ RR RR   RG+S G          RSSS     T + AS  Y++ E SRPRARSDS  S G  GD    E  +    G+ S+A+        RS+G        YG+A G                             QIL TSAVDA AAAAKLAEEIA D+
Sbjct:   57 GSRKWTVIVYIMAALVGILVSYVTSA----------TLIVRKVEGLWRLPFGGGVFEALCEGAAQCWRGFRRXXXXXXXXXFRGDDGSPGDGQRPDFSERKLYGYTS---AAGEGRRLIFPT-RGDAEETRRGRRGRSRGTSRGXXXXXXXXXXRSSSP----TRRTASTFYEDEEASRPRARSDSSGSGGASGDFYDGERLFGAA-GAGSSASGRAXXXXXRSNG--------YGAADGRGVAPSAGGAGRELLRPVGTARRKRGGGVQILPTSAVDAAAAAAKLAEEIANDD 323
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BLAST of mRNA_H-canaliculatus_F_contig1336.2734.1 vs. uniprot
Match: A0A6H5KCH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.130e-28
Identity = 82/132 (62.12%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:    1 GNRGSVVVLYIMAALVGILVSYMASGKRMDVGKASTTLIVRKVEGLWRLPFGGGVFEALCEGVGQCWRGLCRRCXXXXXXXSDRGQASSEETETPNFSNRKTYGHTAVATAAGEETRLILPPGVGDIEKPRR 396
            GNR   VV+YIMAALVGILVSY+AS           TLIVRKVEGLWRLPFGGGVF ALCEG  QCWRG  RRCXXXXXXX      S  + E P+FS  K YG+T+   AAGE  RLI P   GD E+ RR
Sbjct:  430 GNRKWTVVVYIMAALVGILVSYVASA----------TLIVRKVEGLWRLPFGGGVFGALCEGAAQCWRGFRRRCXXXXXXXFRGDDGSPGDDERPDFSEGKLYGYTS---AAGEGRRLIFPT-RGDAEETRR 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1336.2734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1K4_ECTSI7.840e-3946.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCH0_9PHAE3.130e-2862.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1336contigH-canaliculatus_F_contig1336:3292..5242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001350.1
Exons3
Model size879
Cds size879
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1336.2734.1prot_H-canaliculatus_F_contig1336.2734.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1336 3292..5242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.3327885-CDS-H-canaliculatus_F_contig1336:3291..38891622929074.3327885-CDS-H-canaliculatus_F_contig1336:3291..3889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 3292..3889 -
1696845669.941002-CDS-H-canaliculatus_F_contig1336:3291..38891696845669.941002-CDS-H-canaliculatus_F_contig1336:3291..3889Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 3292..3889 -
1622929074.3442338-CDS-H-canaliculatus_F_contig1336:4366..45411622929074.3442338-CDS-H-canaliculatus_F_contig1336:4366..4541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 4367..4541 -
1696845669.950914-CDS-H-canaliculatus_F_contig1336:4366..45411696845669.950914-CDS-H-canaliculatus_F_contig1336:4366..4541Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 4367..4541 -
1622929074.354737-CDS-H-canaliculatus_F_contig1336:5136..52421622929074.354737-CDS-H-canaliculatus_F_contig1336:5136..5242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 5137..5242 -
1696845669.9613357-CDS-H-canaliculatus_F_contig1336:5136..52421696845669.9613357-CDS-H-canaliculatus_F_contig1336:5136..5242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1336 5137..5242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1336.2734.1

>prot_H-canaliculatus_F_contig1336.2734.1 ID=prot_H-canaliculatus_F_contig1336.2734.1|Name=mRNA_H-canaliculatus_F_contig1336.2734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=293bp
GNRGSVVVLYIMAALVGILVSYMASGKRMDVGKASTTLIVRKVEGLWRLP
FGGGVFEALCEGVGQCWRGLCRRCCCCCRCCSDRGQASSEETETPNFSNR
KTYGHTAVATAAGEETRLILPPGVGDIEKPRRLRRPHRGSSNGPPGGRSS
SVSSRGTAKDASDRYDNGEVSRPRARSDSDRSSGGYGDGSAAENGYAPPP
GSPSAAAHLVSGEADRSSGVSGARITAYGSAGGGGGAREVAPGQEQRRSA
TATKKRRGGGFQILATSAVDAVAAAAKLAEEIAKDNGDDGGK*
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mRNA from alignment at H-canaliculatus_F_contig1336:3292..5242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1336.2734.1 ID=mRNA_H-canaliculatus_F_contig1336.2734.1|Name=mRNA_H-canaliculatus_F_contig1336.2734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1951bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1336:3292..5242- (Hapterophycus canaliculatus Oshoro5f female)
GGCAACAGGGGAAGCGTGGTCGTGCTGTACATCATGGCTGCGCTCGTGGG
CATCTTGGTGTCCTATATGGCTTCAGGCAAGAGGATGGATGTAGGGAAGG
CCTCGAGTGTTTGGACATGTGCATGCGTGGCATCGGTGCAGCGCTGCGCT
TCGCAATGCCATTGCATGTTCGCGTGGCTCAGGGCCAGGGACGAGGCCTG
TGCCGCCACCGCGTGTCACGTTTTTCTGACCCCTTGGACCAAGCCTGATG
CCCCCCGCTTTTCACCATCTCTGCACAAGGCGAGCATGGCATCCTCGCTA
TTTCATGATGTGGAACACCTTGTCCTGTGTGGAGCTTTTCGGAGATCTTG
TCGGAGATCTTGTCAGAGATCTCCGTCATTCTACGCAAACAGTATTTCCA
TGATTTAAGACCCGTCACCAAACCCAAGGGCCGTCAATCCTGCAGTGCGT
GAGGAAAGTGCGCCGTTTTTGATGTCATCTTGCCGCCTTCGATCCCTTTG
CCTTTTCCTCTCGTGTAGTTGTTTTCAAGGAAAAAAATGCGTCACTCGCG
CAAATGGTGTTCAGCCCCATGTTGACCCTATTTTCTCCGTGTCTCCATCG
CTTCCTGTGTCCCTTCCGCTCTCCAACCCATCCCTGCTCTGCTCTGGGGC
GGCGTGTTCTTCGGCATGCTCTTATCTTGCGCGTCTCCCGGCACGCACCA
GCAACCCTGATCGTCCGAAAAGTGGAAGGGTTGTGGAGGCTTCCTTTCGG
AGGAGGAGTCTTCGAAGCGCTGTGCGAGGGGGTAGGGCAGTGTTGGCGCG
GCCTTTGCCGAAGATGCTGCTGCTGCTGCCGCTGCTGCTCCGATCGGGGG
CAAGCGTCCTCCGAAGAAACGGAAACGTGGCTCGTCGCGCCGTCTTCGTT
GCTGAGGTCATCATCGTTGCACTAGTTTGGTCGCGTTCACTGGTGTCGAA
ACCCTCCCTCTCGTACTTGTACTCCCTTTCATGCCGTCCCAGTCGCTTTC
GACGGGCGGTGTGATCCTTTCGGAAGGTCTGGTTGAGCGTATCTATAATT
CAAGCTGAATTTTACTATGCTCTCTGTCGGCAGCGGCAGTTTGACTAGGT
ACGTCCGCCTGCCGACCCTGCTCAATCATCATCTCTCCCACCGACATCGA
GGATTTGCTCTTGGGAAGTGATGGTTCACTACTATCCCCTCTCTCCATTC
GCATATGATTTGGGCCGGGGCGTGCACCAAAGCACGGCGTTTGCAAGCGC
TCAACTGCTTTGGATAGGTTGCGGGTGCAGCCCTTGCTGACGATGTCGTC
CCACGTGAGTCAACACCAAATCCCCCTACCCCCACCTTCCTGCGCTTATC
CAGGCCCAATTTTTCCAACAGAAAAACGTATGGACACACGGCGGTGGCGA
CGGCGGCCGGGGAGGAAACCCGACTCATTTTGCCTCCGGGGGTCGGCGAT
ATCGAAAAGCCTCGACGATTGAGGAGACCCCACCGCGGCAGTAGTAACGG
CCCCCCGGGCGGTCGTTCTTCCTCTGTATCGTCTCGAGGAACCGCGAAAG
ACGCGTCGGATCGTTACGACAACGGGGAGGTGTCGAGGCCTCGCGCCCGC
AGCGACAGTGATCGCAGCAGCGGCGGATACGGGGACGGCAGCGCCGCCGA
AAATGGTTACGCGCCCCCCCCGGGATCGCCGTCCGCAGCGGCACATTTAG
TATCAGGAGAAGCAGATAGAAGTAGCGGTGTAAGCGGCGCAAGGATCACC
GCTTACGGCTCGGCGGGCGGCGGCGGGGGGGCGCGCGAGGTTGCCCCAGG
GCAGGAGCAGCGCCGATCAGCAACGGCGACGAAGAAAAGAAGGGGGGGGG
GGTTCCAGATCCTAGCGACGTCGGCGGTGGACGCGGTGGCCGCGGCGGCA
AAGCTGGCTGAAGAAATCGCGAAGGATAATGGCGATGATGGCGGAAAGTG
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1336:3292..5242-

>mRNA_H-canaliculatus_F_contig1336.2734.1 ID=mRNA_H-canaliculatus_F_contig1336.2734.1|Name=mRNA_H-canaliculatus_F_contig1336.2734.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1758bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1336:3292..5242- (Hapterophycus canaliculatus Oshoro5f female)
GGCAACAGGGGAAGCGTGGTCGTGCTGTACATCATGGCTGCGCTCGTGGG
CATCTTGGTGTCCTATATGGCTTCAGGCAAGAGGATGGATGTAGGGAAGG
CCTCGAGGCAACAGGGGAAGCGTGGTCGTGCTGTACATCATGGCTGCGCT
CGTGGGCATCTTGGTGTCCTATATGGCTTCAGGCAAGAGGATGGATGTAG
GGAAGGCCTCGACAACCCTGATCGTCCGAAAAGTGGAAGGGTTGTGGAGG
CTTCCTTTCGGAGGAGGAGTCTTCGAAGCGCTGTGCGAGGGGGTAGGGCA
GTGTTGGCGCGGCCTTTGCCGAAGATGCTGCTGCTGCTGCCGCTGCTGCT
CCGATCGGGGGCAAGCGTCCTCCGAAGAAACGGAAACCAACCCTGATCGT
CCGAAAAGTGGAAGGGTTGTGGAGGCTTCCTTTCGGAGGAGGAGTCTTCG
AAGCGCTGTGCGAGGGGGTAGGGCAGTGTTGGCGCGGCCTTTGCCGAAGA
TGCTGCTGCTGCTGCCGCTGCTGCTCCGATCGGGGGCAAGCGTCCTCCGA
AGAAACGGAAACGCCCAATTTTTCCAACAGAAAAACGTATGGACACACGG
CGGTGGCGACGGCGGCCGGGGAGGAAACCCGACTCATTTTGCCTCCGGGG
GTCGGCGATATCGAAAAGCCTCGACGATTGAGGAGACCCCACCGCGGCAG
TAGTAACGGCCCCCCGGGCGGTCGTTCTTCCTCTGTATCGTCTCGAGGAA
CCGCGAAAGACGCGTCGGATCGTTACGACAACGGGGAGGTGTCGAGGCCT
CGCGCCCGCAGCGACAGTGATCGCAGCAGCGGCGGATACGGGGACGGCAG
CGCCGCCGAAAATGGTTACGCGCCCCCCCCGGGATCGCCGTCCGCAGCGG
CACATTTAGTATCAGGAGAAGCAGATAGAAGTAGCGGTGTAAGCGGCGCA
AGGATCACCGCTTACGGCTCGGCGGGCGGCGGCGGGGGGGCGCGCGAGGT
TGCCCCAGGGCAGGAGCAGCGCCGATCAGCAACGGCGACGAAGAAAAGAA
GGGGGGGGGGGTTCCAGATCCTAGCGACGTCGGCGGTGGACGCGGTGGCC
GCGGCGGCAAAGCTGGCTGAAGAAATCGCGAAGGATAATGGCGATGATGG
CGGAAAGTGAGCCCAATTTTTCCAACAGAAAAACGTATGGACACACGGCG
GTGGCGACGGCGGCCGGGGAGGAAACCCGACTCATTTTGCCTCCGGGGGT
CGGCGATATCGAAAAGCCTCGACGATTGAGGAGACCCCACCGCGGCAGTA
GTAACGGCCCCCCGGGCGGTCGTTCTTCCTCTGTATCGTCTCGAGGAACC
GCGAAAGACGCGTCGGATCGTTACGACAACGGGGAGGTGTCGAGGCCTCG
CGCCCGCAGCGACAGTGATCGCAGCAGCGGCGGATACGGGGACGGCAGCG
CCGCCGAAAATGGTTACGCGCCCCCCCCGGGATCGCCGTCCGCAGCGGCA
CATTTAGTATCAGGAGAAGCAGATAGAAGTAGCGGTGTAAGCGGCGCAAG
GATCACCGCTTACGGCTCGGCGGGCGGCGGCGGGGGGGCGCGCGAGGTTG
CCCCAGGGCAGGAGCAGCGCCGATCAGCAACGGCGACGAAGAAAAGAAGG
GGGGGGGGGTTCCAGATCCTAGCGACGTCGGCGGTGGACGCGGTGGCCGC
GGCGGCAAAGCTGGCTGAAGAAATCGCGAAGGATAATGGCGATGATGGCG
GAAAGTGA
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