mRNA_H-canaliculatus_F_contig13348.2730.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13348.2730.1
Unique NamemRNA_H-canaliculatus_F_contig13348.2730.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Match: A0A6H5KRZ0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.510e-20
Identity = 62/115 (53.91%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:    1 LSVSSTSEALELSEALLCSGAGEFEVIWIGEVLVTSTILVSNSTSLNITSSGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSLQRGLAEAAAVEVIDLSVLTAVDCFFSYNGG 345
            LSVSST+EALEL+  L CSGAG+FEV W GEV+VT T  VS  TSL IT S       AVIDGG  VQLF+V+  S L L+ +S+ R      AV+  + S +TA DC FS N G
Sbjct:   45 LSVSSTAEALELTNELECSGAGDFEVEWSGEVVVTKTFAVSTGTSLKITGS---IFDGAVIDGGGAVQLFVVNDGSQLELDSVSVVRSFG--TAVDASE-SQVTATDCTFSSNNG 153
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BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.260e-17
Identity = 61/121 (50.41%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    7 VSSTSEALELSEALLCSGAGEFEVIWIGEVLVTSTILVSNSTSLNITSSGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSLQRGLAE----------AAAVEVIDLSVLTAVDCFFSYN 339
            VS+T EA ELSEALLCSGAGEFEV W GEVL+   I +SN + + +T  GA+ G  AVIDGGD V LF V+  S+L L+ LSL RG+A            A +   D  +LTA  C F  N
Sbjct:   33 VSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVT--GASAGE-AVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGN 150
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BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.500e-12
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 LSVSSTSEALELSEALL-CSGAGEFEVIWIGEVLVTSTILVSNSTSLNITSSGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSLQRG 264
            L+VS+T+EALELS++L  C+G+GEFEV W G VL++ TI V N T+L +   GA     AVIDGGD + LF V   S L+L+ +SL  G
Sbjct:   31 LNVSTTAEALELSDSLNNCAGSGEFEVNWSGNVLLSQTITVQNRTALTVRGVGAEA---AVIDGGDAISLFHVFNGSVLMLDGVSLIGG 116
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BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-8
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    7 VSSTSEALELSEALLCSGAGEFEVIWIGEVLVTSTILVSNSTSLNITSSGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSLQRGLAEA 276
            V+S+ +A+ L+  L CS  G+F V W+GEV+VT TI V+N TSLNIT  G+     A  +G    QLF+V+  SS+   D++   G A +
Sbjct:   85 VASSEDAVTLATLLRCSD-GDFAVQWVGEVIVTETIRVTNGTSLNITGDGSG----ATANGDHTTQLFVVEGGSSMHCTDMTFANGNASS 169
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BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Match: A0A6H5L9I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I1_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-6
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 LSVSSTSEALELSEALLCSGAGEFEVIWIGEVLVTSTILVSNSTSLNITSSGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSL 255
            L+V ST +A +L+ +++CS  G+F V W  EV VT+TI VS+ TSLNIT     TG  A+ DGG   QL L     S   + +SL
Sbjct:   31 LTVGSTGDADDLANSVICSN-GDFNVQWDEEVFVTTTIRVSDGTSLNIT----GTGPGAIADGGGSTQLALSGGAISAAYSSVSL 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13348.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRZ0_9PHAE6.510e-2053.91Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JWI3_9PHAE3.260e-1750.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF6_ECTSI5.500e-1251.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM10_ECTSI1.350e-842.22Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5L9I1_9PHAE1.450e-644.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13348contigH-canaliculatus_F_contig13348:2412..2803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.6483736-CDS-H-canaliculatus_F_contig13348:2411..28011622929073.6483736-CDS-H-canaliculatus_F_contig13348:2411..2801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13348 2412..2801 +
1696845669.6224706-CDS-H-canaliculatus_F_contig13348:2411..28011696845669.6224706-CDS-H-canaliculatus_F_contig13348:2411..2801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13348 2412..2801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13348.2730.1prot_H-canaliculatus_F_contig13348.2730.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13348 2412..2801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13348.2730.1

>prot_H-canaliculatus_F_contig13348.2730.1 ID=prot_H-canaliculatus_F_contig13348.2730.1|Name=mRNA_H-canaliculatus_F_contig13348.2730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=130bp
LSVSSTSEALELSEALLCSGAGEFEVIWIGEVLVTSTILVSNSTSLNITS
SGAATGSPAVIDGGDEVQLFLVDADSSLVLNDLSLQRGLAEAAAVEVIDL
SVLTAVDCFFSYNGGELGHVSFQFSDYHER
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mRNA from alignment at H-canaliculatus_F_contig13348:2412..2803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13348.2730.1 ID=mRNA_H-canaliculatus_F_contig13348.2730.1|Name=mRNA_H-canaliculatus_F_contig13348.2730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13348:2412..2803+ (Hapterophycus canaliculatus Oshoro5f female)
CTATCTGTTTCCAGCACCTCCGAGGCTTTGGAACTCAGCGAAGCATTGTT
GTGCTCCGGAGCAGGCGAGTTCGAGGTGATCTGGATTGGGGAGGTGCTTG
TGACCAGCACCATCTTAGTGTCCAACAGCACCTCGTTGAACATCACCAGC
AGCGGGGCGGCAACGGGCTCACCAGCAGTCATCGATGGAGGCGACGAGGT
GCAACTTTTCCTTGTGGATGCGGATTCTTCCCTAGTGCTCAACGACCTCT
CGCTCCAGCGAGGCCTGGCTGAGGCCGCAGCGGTGGAAGTTATCGACTTG
TCTGTACTGACGGCGGTTGACTGCTTCTTTTCCTACAACGGAGGTGAGCT
GGGGCATGTGAGTTTTCAGTTTTCAGATTACCACGAACGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13348:2412..2803+

>mRNA_H-canaliculatus_F_contig13348.2730.1 ID=mRNA_H-canaliculatus_F_contig13348.2730.1|Name=mRNA_H-canaliculatus_F_contig13348.2730.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=780bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13348:2412..2803+ (Hapterophycus canaliculatus Oshoro5f female)
CTATCTGTTTCCAGCACCTCCGAGGCTTTGGAACTCAGCGAAGCATTGTT
GTGCTCCGGAGCAGGCGAGTTCGAGGTGATCTGGATTGGGGAGGTGCTTG
TGACCAGCACCATCTTAGTGTCCAACAGCACCTCGTTGAACATCACCAGC
AGCGGGGCGGCAACGGGCTCACCAGCAGTCATCGATGGAGGCGACGAGGT
GCAACTTTTCCTTGTGGATGCGGATTCTTCCCTAGTGCTCAACGACCTCT
CGCTCCAGCGAGGCCTGGCTGAGGCCGCAGCGGTGGAAGTTATCGACTTG
TCTGTACTGACGGCGGTTGACTGCTTCTTTTCCTACAACGGAGGTGAGCT
GGGGCATGTGAGTTTTCAGTTTTCAGATTACCACGAACGCCTATCTGTTT
CCAGCACCTCCGAGGCTTTGGAACTCAGCGAAGCATTGTTGTGCTCCGGA
GCAGGCGAGTTCGAGGTGATCTGGATTGGGGAGGTGCTTGTGACCAGCAC
CATCTTAGTGTCCAACAGCACCTCGTTGAACATCACCAGCAGCGGGGCGG
CAACGGGCTCACCAGCAGTCATCGATGGAGGCGACGAGGTGCAACTTTTC
CTTGTGGATGCGGATTCTTCCCTAGTGCTCAACGACCTCTCGCTCCAGCG
AGGCCTGGCTGAGGCCGCAGCGGTGGAAGTTATCGACTTGTCTGTACTGA
CGGCGGTTGACTGCTTCTTTTCCTACAACGGAGGTGAGCTGGGGCATGTG
AGTTTTCAGTTTTCAGATTACCACGAACGC
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