mRNA_H-canaliculatus_F_contig13329.2720.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13329.2720.1
Unique NamemRNA_H-canaliculatus_F_contig13329.2720.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A6H5KLK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 8.940e-61
Identity = 106/115 (92.17%), Postives = 106/115 (92.17%), Query Frame = 1
Query:   22 HESGFGMPQRTNEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAKAAKEAAQHR 366
            HESGFGMP R NEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG       VSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAKAAKEAAQHR
Sbjct:  269 HESGFGMPHRANEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGA------VSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAKAAKEAAQHR 377          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S3Y2Z2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Z2_HETAK)

HSP 1 Score: 159 bits (403), Expect = 4.140e-47
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 1
Query:   58 EPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAK 339
            +PP EFDHAI+YVTTIK+RF  EP  YKAFLEILHTYQKEQRGIKDVLEQVS+LFADHPDLL+EFTYFLPD VQ QA+ERLNRAA ESEMRKAK
Sbjct:   75 QPPVEFDHAISYVTTIKRRFQSEPAIYKAFLEILHTYQKEQRGIKDVLEQVSALFADHPDLLKEFTYFLPDAVQVQAKERLNRAAHESEMRKAK 168          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.490e-46
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 1
Query:   58 EPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAKA 342
            E PAEFDHAI+YVTTIKKRFS EPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQ+QARERLNRAA+ESE R+ +A
Sbjct:  292 EQPAEFDHAISYVTTIKKRFSTEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQDQARERLNRAAQESEERRRRA 386          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S1XK99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK99_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.610e-44
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 1
Query:   28 SGFGMPQRTNEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMR 330
            +G G   + N  P EFDHAI YVTTIKKRFS +P TYK FLEILHTYQKEQR IK+VL+QVS LFA+HPDLL+EFTYFLPD VQEQA+ERL RAA+E+EMR
Sbjct:   11 AGDGNAAKGNGQPVEFDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQKEQRSIKEVLDQVSELFAEHPDLLKEFTYFLPDAVQEQAKERLQRAAQEAEMR 111          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S1XJY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJY5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.370e-43
Identity = 74/102 (72.55%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   28 SGFGMPQRTNEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRK 333
            +G G   + N  P EFDHAI YVTTIKKRFS +P TYK FLEILHTYQ+EQRGIK VL+QVS LF DHPDLL+EFTYFLPD VQ+QA+ERL+RAA+++EMRK
Sbjct:   11 AGDGNAAKGNGQPVEFDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQREQRGIKMVLDQVSELFRDHPDLLKEFTYFLPDAVQDQAKERLHRAAQQAEMRK 112          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S4E9C3_9STRA (Hypothetical protein n=8 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9C3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.060e-42
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1
Query:   64 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRK 333
            P EFDHAITYVTTIKKRF+HEP+TYKAFLEILHTYQKEQR IKDVLEQVS LFADH DLL+EFTYFLPD VQEQA+ERL+RAARESEMR+
Sbjct:  137 PVEFDHAITYVTTIKKRFAHEPETYKAFLEILHTYQKEQRSIKDVLEQVSQLFADHSDLLKEFTYFLPDAVQEQAKERLSRAARESEMRR 226          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S2CK77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CK77_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.370e-42
Identity = 75/102 (73.53%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   37 GMPQRTNEPPAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAKA 342
            G   R +  P EFD AI YVT IKKRF H+  TYKAFLEILHTYQ+EQ+GIK+VLEQVS LFADH DLL EFTYFLPD VQEQA ERL+RA RESEMR+A A
Sbjct:    2 GAAGRQSGQPVEFDRAINYVTKIKKRFDHDQDTYKAFLEILHTYQREQKGIKEVLEQVSGLFADHEDLLTEFTYFLPDAVQEQATERLHRAVRESEMRRAAA 103          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7R9ZHJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHJ2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.880e-40
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 1
Query:   70 EFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKA 336
            EFDHAITYVTTIKKRF+++P+TY+ FLEILHTYQKEQRGIK+VLEQVSSLFADHPDLL+EFT+FLPD VQEQA+ERL RAA E+  R A
Sbjct:  121 EFDHAITYVTTIKKRFANDPRTYQTFLEILHTYQKEQRGIKEVLEQVSSLFADHPDLLKEFTFFLPDAVQEQAKERLQRAAEEAHARHA 209          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A7S1USX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USX6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.400e-39
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   43 PQRTNEP--PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESE 324
            PQ+   P    EFDHAI+YVT IKKRF+ +P TY  FLEILHTYQKEQRGIK+VLEQV++LFADHPDLL+EFT+FLPD VQEQA+ERL+RAA ESE
Sbjct:  102 PQQPQPPGTAVEFDHAISYVTNIKKRFADDPATYHTFLEILHTYQKEQRGIKEVLEQVAALFADHPDLLKEFTFFLPDAVQEQAKERLHRAAAESE 197          
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Match: A0A397A634_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A634_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.370e-38
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 1
Query:   64 PAEFDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAARESEMRKAK 339
            P EFDHAI YVTTIKKRF+ EP+TYKAFLEILHTYQKEQ  IK VL+QVS LF DHPDLLREFT+FLPD VQEQA+ERLN+AA ++++R+AK
Sbjct:  162 PVEFDHAILYVTTIKKRFADEPETYKAFLEILHTYQKEQGSIKQVLDQVSFLFRDHPDLLREFTFFLPDAVQEQAKERLNKAAEKAQLRQAK 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13329.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLK8_9PHAE8.940e-6192.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3Y2Z2_HETAK4.140e-4785.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZD67_9STRA9.490e-4690.53HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S1XK99_9STRA6.610e-4474.26Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1XJY5_9STRA2.370e-4372.55Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4E9C3_9STRA2.060e-4287.78Hypothetical protein n=8 Tax=Pelagomonas calceolat... [more]
A0A7S2CK77_9STRA5.370e-4273.53Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9ZHJ2_9STRA2.880e-4080.90Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1USX6_9STRA2.400e-3973.96Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A397A634_9STRA1.370e-3877.17Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13329contigH-canaliculatus_F_contig13329:313..3125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog157072.XP_008874986.1
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
EggNOG free text desc.histone deacetylation
EggNOG OGsCOG5602@1,KOG4204@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13329.2720.1prot_H-canaliculatus_F_contig13329.2720.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13329 313..3125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.8814223-CDS-H-canaliculatus_F_contig13329:312..4391622929071.8814223-CDS-H-canaliculatus_F_contig13329:312..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 313..439 -
1696845668.860036-CDS-H-canaliculatus_F_contig13329:312..4391696845668.860036-CDS-H-canaliculatus_F_contig13329:312..439Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 313..439 -
1622929071.9321668-CDS-H-canaliculatus_F_contig13329:787..9171622929071.9321668-CDS-H-canaliculatus_F_contig13329:787..917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 788..917 -
1696845668.8715124-CDS-H-canaliculatus_F_contig13329:787..9171696845668.8715124-CDS-H-canaliculatus_F_contig13329:787..917Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 788..917 -
1622929071.95133-CDS-H-canaliculatus_F_contig13329:1648..17691622929071.95133-CDS-H-canaliculatus_F_contig13329:1648..1769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 1649..1769 -
1696845668.8803265-CDS-H-canaliculatus_F_contig13329:1648..17691696845668.8803265-CDS-H-canaliculatus_F_contig13329:1648..1769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 1649..1769 -
1622929071.9751005-CDS-H-canaliculatus_F_contig13329:3062..31251622929071.9751005-CDS-H-canaliculatus_F_contig13329:3062..3125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 3063..3125 -
1696845668.8920166-CDS-H-canaliculatus_F_contig13329:3062..31251696845668.8920166-CDS-H-canaliculatus_F_contig13329:3062..3125Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13329 3063..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13329.2720.1

>prot_H-canaliculatus_F_contig13329.2720.1 ID=prot_H-canaliculatus_F_contig13329.2720.1|Name=mRNA_H-canaliculatus_F_contig13329.2720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp
GGGGGGGHESGFGMPQRTNEPPAEFDHAITYVTTIKKRFSHEPQTYKAFL
EILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERL
NRAARESEMRKAKAAKEAAQHRHASGSSIHHGANSSASSHSAGVGGG
back to top

mRNA from alignment at H-canaliculatus_F_contig13329:313..3125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13329.2720.1 ID=mRNA_H-canaliculatus_F_contig13329.2720.1|Name=mRNA_H-canaliculatus_F_contig13329.2720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2813bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13329:313..3125- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGCGGCGGTGGTGGAGGGCACGAGAGCGGTTTCGGGATGCCTCAGCG GACGAACGAGCCGGTACGTGCTGTGTTGGGGAAGATGAAGAGTCGCCCCT TTGGGTGTCTCAGCATCCCACTCTGTGGCTGTCGGTCTGAGGTAGTCGAG AACGTAGAGGTGCACGAGTTTTTACTTGCTTTTGTGTAGCGTTTGTCACC GTGTGACAGGTGCAGGCGCTTCTTTTTTTTGCGTTCGAGCGTGCGTGTTT CGACGCCTGAAAGTTCAGTCGTGCCCATGTCGGAGGGCGTACACGTTCAG AGTTCGACCGGGGTGACCGGGGGAGGATGGACCCCTCTGGAGTCATCCAG AGCGGTCTCTTTCGTCTTGCTGTTTTTTTTTTTTTGATAAAACAAGTCAA CAACACTGAAGGAATACCCATCTGAGACACTGTCCATCTCAAGGGGCTTT TGTTCATTCCATTCAGTGAGGGTTCCATTCGGTGACAGGATGAAACTATG GAGCAGTAGGCCAGTTGTGGACAAAAACGTGAAAAGTTGTGGACAAAGAC GTGAAAAACGTGGGATGGGGGATGGACAAACACAGAAGAGTGACATTTGG GAAATGAATGGGATGGGGAAGAGAACAACAACATATACACCACGAGAACT TTAATACTTCCTGTGATGATTTGCCGCGTGAGAGAATTCGTTGTCCAGAA GCTTGGTGATCCATCGATTGAGCCATCGGTCGAACCCATGATCTGGTTCA CGTGACTAATCCTTTTGTTTTTTGTCAAGAAAGAGTAAAGAACATCAATG CAATACCCTCCCCTGTGATAGATACAGCGATACCGACCCAGGGGAATTTT CGTCGACTTTTTTTCTTACGGGGAAGAAAAGGGTCTTCATTTTTTGTTAG GTATTGGCAGTCGGGATGTTCCTTATCGCCTGTTGGCGGCGGCGAAGGGG CCATGCGGTCAGGGATCTAGCACCCCTGTGCGGCCTGTCCATCAGGATGG CGTGCGAGAGGGTTGTCCGACGTGATCGTGCATTCGTTGCGCGTTGGGGT GCGAGTGTCCGGAGGGGTGGTGGGGGGGATAGAAGGAGTCGGTGCTGTTC GCCTGGAGGTATCGAGTGAATTCCCTCCGTATGATTCGGGGGTCTCGTCA AAAAGTAGGCGTTTGCGCCGTCTTGCCTTTCCGCTGTTCGCGTTTCGTCA CTAAGAAAGAAACACGACGCCCCCCCCCCCCCCTGTCTGGTTCCTTTTCG TGCCCCCACACAACTCATCCGACACCCCTGTGTCCACCACACCTCGCTCC GCGGGGACCGGGTTGGCTTGGACTGACTGCGAAAAATCTCGACCCACCAC GCGCAGCCGGCGGAGTTCGACCACGCCATCACGTACGTCACCACCATCAA GAAGCGCTTCAGCCACGAGCCGCAGACCTACAAGGCCTTCCTCGAGATCC TGCACACCTACCAGAAGGAGCAGCGAGGTGAGCGGCGGGTGGCACGCACG TACACGCGCGCGCGGCGGCAGTCGTTCGCGTTCCGCTGAGAGAGTAGATT TTTTTCTTTCAGTTTTCTTGCGGTTGGTCAGCCGCCCCAGGGCCGGGGGT CGATGCTGGTGCAGGGCAATTGCCGTAATCTGCTCTGATTTTTCCCCCAG AGAGAGATGGCCGTTTGTTTCTCGTGGAGAGGCTGTCCCGGGGAAATCGC CGAAGGGGGGGTGGGCGGGGGGAGGGGTGGTGATGTCTCCTTGTAGGGGG GAAATTTAAGGCGCCGCCCCCGGACTCAAACCAGGATTTTCTGTATCTTA GCGGGATTCGATGTGTGAGAAGGGAGGAGGTGATGGGGGAGGGGTCGGAG CAGATGACGGTTTACACGGAACGCACACAAAAAGCTCCCATTTTTTGTTT GTTTTCTACCCTCGATGTCCTGTCAGCGTCTCTTGCTACATTGACCTCCC TGCCACGCGCGAGTGAAGATATGGAAGCATTACATTCTGAAAGAAAAAAA AATGTTGGGAACTCTTTCGTGCGTGCACCACCTCTCCCACAGCGTCGGTC CACCCCACAAACAGTAGCGGCGCGTTGCAGCTCTCGTGCTCCCCCGTCGC CGCCCCGTCCCGTCTCGTCCCATCCCATCCCATCCCCACGGGGTCCCGAT TCCGCGCCGTCTGCCGTCTCACAACGCACCCGCGGTGTGCACGCGTGTCC TGCCGCAGGCATCAAGGACGTCCTGGAGCAGGTGTCCTCTCTGTTCGCCG ACCACCCAGACCTGCTTCGCGAGTTCACCTACTTCCTGCCCGACCCCGTG CAGGAGCAGGCCAGGGAGAGGCTCAACCGCGCGGCCAGGTGCGTAGGACG AGCGCCGCCCTCGCGGCAGGCGGTGGAGGGCTGGTCGGGGCGGGTAGGGC CAAGGGATAGATAAGTCTCGCCGTCGCGCGGGGAGGGTTGGATCTTTGTA CATACGCAGCTGGGCGGATGCGACACCTGCGTTGTTGGCGACGGGTGCGA CCGAGGACGGTCGCCAACAGCAAGAGCGCCCGTGCCAGGAGGACCCCCGG TACTTTCGCTCCCATCCCCTCGCCTCGCCGCTGCAAGTACTTGTGTCCAC CTTCCAAGAGGAACTTCGGGGAAGCTTATCCCGAAAACCTCCCCCCCCCC TCCCCGCGCGCGCCCCTCCCCGACCCCGATCCACAGGGAGAGCGAGATGC GCAAGGCCAAGGCCGCAAAAGAAGCTGCCCAGCACAGGCACGCGAGCGGC AGTAGCATCCATCACGGTGCAAACAGTAGCGCCTCCTCTCACTCGGCCGG TGTAGGAGGTGGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13329:313..3125-

>mRNA_H-canaliculatus_F_contig13329.2720.1 ID=mRNA_H-canaliculatus_F_contig13329.2720.1|Name=mRNA_H-canaliculatus_F_contig13329.2720.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13329:313..3125- (Hapterophycus canaliculatus Oshoro5f female)
GGAGGCGGCGGTGGTGGAGGGCACGAGAGCGGTTTCGGGATGCCTCAGCG
GACGAACGAGCCGGGAGGCGGCGGTGGTGGAGGGCACGAGAGCGGTTTCG
GGATGCCTCAGCGGACGAACGAGCCGCCGGCGGAGTTCGACCACGCCATC
ACGTACGTCACCACCATCAAGAAGCGCTTCAGCCACGAGCCGCAGACCTA
CAAGGCCTTCCTCGAGATCCTGCACACCTACCAGAAGGAGCAGCGAGCCG
GCGGAGTTCGACCACGCCATCACGTACGTCACCACCATCAAGAAGCGCTT
CAGCCACGAGCCGCAGACCTACAAGGCCTTCCTCGAGATCCTGCACACCT
ACCAGAAGGAGCAGCGAGGCATCAAGGACGTCCTGGAGCAGGTGTCCTCT
CTGTTCGCCGACCACCCAGACCTGCTTCGCGAGTTCACCTACTTCCTGCC
CGACCCCGTGCAGGAGCAGGCCAGGGAGAGGCTCAACCGCGCGGCCAGGC
ATCAAGGACGTCCTGGAGCAGGTGTCCTCTCTGTTCGCCGACCACCCAGA
CCTGCTTCGCGAGTTCACCTACTTCCTGCCCGACCCCGTGCAGGAGCAGG
CCAGGGAGAGGCTCAACCGCGCGGCCAGGGAGAGCGAGATGCGCAAGGCC
AAGGCCGCAAAAGAAGCTGCCCAGCACAGGCACGCGAGCGGCAGTAGCAT
CCATCACGGTGCAAACAGTAGCGCCTCCTCTCACTCGGCCGGTGTAGGAG
GTGGAGGAGAGCGAGATGCGCAAGGCCAAGGCCGCAAAAGAAGCTGCCCA
GCACAGGCACGCGAGCGGCAGTAGCATCCATCACGGTGCAAACAGTAGCG
CCTCCTCTCACTCGGCCGGTGTAGGAGGTGGA
back to top