mRNA_H-canaliculatus_F_contig13323.2718.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13323.2718.1
Unique NamemRNA_H-canaliculatus_F_contig13323.2718.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13323.2718.1 vs. uniprot
Match: A0A6H5JC90_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC90_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.350e-9
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   55 YLVEVELAPGSGSKGDERGPWVCYKRYSDFRALWGGLTRQYTGMETLLDFPT 210
            YLVEVE +    S G     W CYKR+SDFRALW GL+R+Y  ME LL FP+
Sbjct:  338 YLVEVEAS----SAGGGTRSWACYKRFSDFRALWTGLSRRYPRMEALLRFPS 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13323.2718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC90_9PHAE1.350e-957.69PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13323contigH-canaliculatus_F_contig13323:1442..2605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.7638958-CDS-H-canaliculatus_F_contig13323:1442..15841622929071.7638958-CDS-H-canaliculatus_F_contig13323:1442..1584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13323 1443..1584 -
1696845668.828971-CDS-H-canaliculatus_F_contig13323:1442..15841696845668.828971-CDS-H-canaliculatus_F_contig13323:1442..1584Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13323 1443..1584 -
1622929071.7784455-CDS-H-canaliculatus_F_contig13323:2474..26051622929071.7784455-CDS-H-canaliculatus_F_contig13323:2474..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13323 2475..2605 -
1696845668.8372686-CDS-H-canaliculatus_F_contig13323:2474..26051696845668.8372686-CDS-H-canaliculatus_F_contig13323:2474..2605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13323 2475..2605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13323.2718.1prot_H-canaliculatus_F_contig13323.2718.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13323 1443..2605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13323.2718.1

>prot_H-canaliculatus_F_contig13323.2718.1 ID=prot_H-canaliculatus_F_contig13323.2718.1|Name=mRNA_H-canaliculatus_F_contig13323.2718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
AGVRGVAGAAATNTDTRRYLVEVELAPGSGSKGDERGPWVCYKRYSDFRA
LWGGLTRQYTGMETLLDFPTPPRRRSVFLLGAEGRAAQERE
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mRNA from alignment at H-canaliculatus_F_contig13323:1442..2605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13323.2718.1 ID=mRNA_H-canaliculatus_F_contig13323.2718.1|Name=mRNA_H-canaliculatus_F_contig13323.2718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13323:1442..2605- (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGGTTCGTGGTGTTGCAGGGGCGGCGGCGACGAACACGGACACTAG
GCGCTACCTGGTGGAGGTCGAGTTGGCTCCTGGTTCGGGTTCGAAGGGGG
ACGAGCGGGGCCCTTGGGTTTGCTACAAGAGGTACGGCGTTTGAGGGTAG
CGGTACGGGGGGGGGGCCGGGGTCGTCCCAAGCTTGGGAAAATTCTGTGG
TTATTAGCGTTCCTGTTGTGTGTGTGTGTGAATCGTTATTCGTCATGGCC
GTGTCAAGGCCTGGCGTTAACTTTACTGCGCAAACGTTTACAAAGTACCT
ATGAGCAGCATCCATCCCTCTTCCGTGCACATGGACACGTAGACACATGG
ACACATGGGCACATGGACACATCGAAGTGGGAAGAAATAGGATTCGCTCC
TTCCTTGCTTAATTTCTTGCCCTACCGCAGACTATTCTAGCTCGAAAGAG
AAATAGGCAACCCTTGCTGCCATGGACAGACTGCCGATGTTCGTCTGGCG
GCACAGGCTACACGTTCCGTCGGCTGTGTTGGCTCAGCTGTATTTGTCTG
CTTACTTGGGGGCTGTAGAGCTCTCACTCGCATGAGGACCTCATGAGGTT
CTTTGGGAGAAAGGATGCGGCGGTAAGTACGCTGCTTGGCGCTGAGGGTA
AGCGTTGAGTAGCGTTTCATCTTGATAGCACAGCGTAGCCGGACTCAACG
CAGCGGCTTAGTTGAGCGCCTTCGTCTCCTTCCTGATTGATTACCTGGCC
ATCAGGGGCGTGCTCGACAAAAGTCCTCTCCCGCAGGGCGACTAGCGGGA
AAGGCTCGTGGTAGCGCCCGCCTAGCTTGTCGATTTACTCGTACCCCTAA
AACAGAGTGAGGTGCTGCTGTAGACTGACTGCGACAAAATAGCAGACGAG
CGAGATAAGGCATCGAGACCAGAAGCCTAAAATCTTATCGTACAATAATC
CGTCCTGATTTGTACGTGTTGGATGTGCCGTGTGCCGTGTTGGATGTGCC
GTGCGGCGACGACAAAAAAAGGTACTCGGACTTTCGAGCCTTGTGGGGAG
GCTTGACGCGGCAGTACACCGGCATGGAGACGTTGTTGGATTTCCCGACG
CCGCCGCGCAGAAGATCTGTTTTTTTGCTGGGTGCTGAGGGAAGAGCGGC
ACAGGAGAGAGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13323:1442..2605-

>mRNA_H-canaliculatus_F_contig13323.2718.1 ID=mRNA_H-canaliculatus_F_contig13323.2718.1|Name=mRNA_H-canaliculatus_F_contig13323.2718.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13323:1442..2605- (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGGTTCGTGGTGTTGCAGGGGCGGCGGCGACGAACACGGACACTAG
GCGCTACCTGGTGGAGGTCGAGTTGGCTCCTGGTTCGGGTTCGAAGGGGG
ACGAGCGGGGCCCTTGGGTTTGCTACAAGAGGCGGGGGTTCGTGGTGTTG
CAGGGGCGGCGGCGACGAACACGGACACTAGGCGCTACCTGGTGGAGGTC
GAGTTGGCTCCTGGTTCGGGTTCGAAGGGGGACGAGCGGGGCCCTTGGGT
TTGCTACAAGAGGTACTCGGACTTTCGAGCCTTGTGGGGAGGCTTGACGC
GGCAGTACACCGGCATGGAGACGTTGTTGGATTTCCCGACGCCGCCGCGC
AGAAGATCTGTTTTTTTGCTGGGTGCTGAGGGAAGAGCGGCACAGGAGAG
AGAGGTACTCGGACTTTCGAGCCTTGTGGGGAGGCTTGACGCGGCAGTAC
ACCGGCATGGAGACGTTGTTGGATTTCCCGACGCCGCCGCGCAGAAGATC
TGTTTTTTTGCTGGGTGCTGAGGGAAGAGCGGCACAGGAGAGAGAG
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