mRNA_H-canaliculatus_F_contig13321.2717.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13321.2717.1
Unique NamemRNA_H-canaliculatus_F_contig13321.2717.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13321.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13321contigH-canaliculatus_F_contig13321:65..728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size462
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.7026162-UTR-H-canaliculatus_F_contig13321:64..2661622929071.7026162-UTR-H-canaliculatus_F_contig13321:64..266Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13321 65..266 +
1696845668.8075635-UTR-H-canaliculatus_F_contig13321:64..2661696845668.8075635-UTR-H-canaliculatus_F_contig13321:64..266Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13321 65..266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.719133-CDS-H-canaliculatus_F_contig13321:266..7281622929071.719133-CDS-H-canaliculatus_F_contig13321:266..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13321 267..728 +
1696845668.8177907-CDS-H-canaliculatus_F_contig13321:266..7281696845668.8177907-CDS-H-canaliculatus_F_contig13321:266..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13321 267..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13321.2717.1prot_H-canaliculatus_F_contig13321.2717.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13321 267..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13321.2717.1

>prot_H-canaliculatus_F_contig13321.2717.1 ID=prot_H-canaliculatus_F_contig13321.2717.1|Name=mRNA_H-canaliculatus_F_contig13321.2717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=154bp
MRGRQEWGALLRRSGGPACTVDVPVDNGRSVGSMTEGAGAGCSPHRQICS
TIGRVCLLCRCPCDRRWKHDGRTSRISTAEGMGAADGTSVVACYARQTVV
STAGEARVSPSRGGEAWGFGGFASERLTSSGGRGAPNSRPSSRSISSRSS
SISN
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mRNA from alignment at H-canaliculatus_F_contig13321:65..728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13321.2717.1 ID=mRNA_H-canaliculatus_F_contig13321.2717.1|Name=mRNA_H-canaliculatus_F_contig13321.2717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=664bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13321:65..728+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGCTTGTGGGGCGATTGGTGGGGTTTGCTTGTTCAGCACATGTTCCTT
GGAACAGCGGGGAGAAAGTACATGACGGAAGCTTGAGGCCACGAGGGCTA
GGGGTTTGGTCTGTGGGGAGGCGGTCCTATGCGCGGCAAAGGTACATGAA
GGAAGCTTGAGGCGACGAGGGCTAGGGGTTTGGTCTCTAGGGAGGCGGTC
CTATGCGCGGCAGGCAAGAATGGGGAGCGTTATTGAGGCGGTCGGGGGGA
CCTGCTTGCACAGTAGACGTTCCTGTCGACAACGGGAGAAGCGTCGGTAG
CATGACTGAGGGTGCAGGTGCGGGCTGTTCGCCTCACAGGCAAATCTGTT
CTACGATAGGCCGGGTCTGCTTGCTTTGCAGGTGCCCCTGTGACCGACGA
TGGAAGCATGATGGACGCACAAGCAGAATTTCCACTGCTGAAGGAATGGG
TGCGGCAGACGGCACGAGTGTGGTCGCTTGCTATGCTCGGCAAACGGTCG
TATCAACAGCCGGTGAAGCGCGAGTATCGCCGTCGAGGGGAGGGGAGGCC
TGGGGGTTCGGTGGCTTTGCGAGCGAACGTCTCACGAGCAGCGGTGGAAG
GGGAGCACCAAACAGCCGCCCCAGCAGCCGCAGCATCAGCAGCCGCAGCA
GCAGCATCAGCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13321:65..728+

>mRNA_H-canaliculatus_F_contig13321.2717.1 ID=mRNA_H-canaliculatus_F_contig13321.2717.1|Name=mRNA_H-canaliculatus_F_contig13321.2717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=924bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13321:65..728+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGGCAGGCAAGAATGGGGAGCGTTATTGAGGCGGTCGGGGGGACC
TGCTTGCACAGTAGACGTTCCTGTCGACAACGGGAGAAGCGTCGGTAGCA
TGACTGAGGGTGCAGGTGCGGGCTGTTCGCCTCACAGGCAAATCTGTTCT
ACGATAGGCCGGGTCTGCTTGCTTTGCAGGTGCCCCTGTGACCGACGATG
GAAGCATGATGGACGCACAAGCAGAATTTCCACTGCTGAAGGAATGGGTG
CGGCAGACGGCACGAGTGTGGTCGCTTGCTATGCTCGGCAAACGGTCGTA
TCAACAGCCGGTGAAGCGCGAGTATCGCCGTCGAGGGGAGGGGAGGCCTG
GGGGTTCGGTGGCTTTGCGAGCGAACGTCTCACGAGCAGCGGTGGAAGGG
GAGCACCAAACAGCCGCCCCAGCAGCCGCAGCATCAGCAGCCGCAGCAGC
AGCATCAGCAACATGCGCGGCAGGCAAGAATGGGGAGCGTTATTGAGGCG
GTCGGGGGGACCTGCTTGCACAGTAGACGTTCCTGTCGACAACGGGAGAA
GCGTCGGTAGCATGACTGAGGGTGCAGGTGCGGGCTGTTCGCCTCACAGG
CAAATCTGTTCTACGATAGGCCGGGTCTGCTTGCTTTGCAGGTGCCCCTG
TGACCGACGATGGAAGCATGATGGACGCACAAGCAGAATTTCCACTGCTG
AAGGAATGGGTGCGGCAGACGGCACGAGTGTGGTCGCTTGCTATGCTCGG
CAAACGGTCGTATCAACAGCCGGTGAAGCGCGAGTATCGCCGTCGAGGGG
AGGGGAGGCCTGGGGGTTCGGTGGCTTTGCGAGCGAACGTCTCACGAGCA
GCGGTGGAAGGGGAGCACCAAACAGCCGCCCCAGCAGCCGCAGCATCAGC
AGCCGCAGCAGCAGCATCAGCAAC
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