mRNA_H-canaliculatus_F_contig1332.2716.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1332.2716.1
Unique NamemRNA_H-canaliculatus_F_contig1332.2716.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1332.2716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1332contigH-canaliculatus_F_contig1332:21218..21592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929071.4819617-CDS-H-canaliculatus_F_contig1332:21217..215921622929071.4819617-CDS-H-canaliculatus_F_contig1332:21217..21592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 21218..21592 +
1696845668.7069263-CDS-H-canaliculatus_F_contig1332:21217..215921696845668.7069263-CDS-H-canaliculatus_F_contig1332:21217..21592Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1332 21218..21592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1332.2716.1prot_H-canaliculatus_F_contig1332.2716.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1332 21218..21592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1332.2716.1

>prot_H-canaliculatus_F_contig1332.2716.1 ID=prot_H-canaliculatus_F_contig1332.2716.1|Name=mRNA_H-canaliculatus_F_contig1332.2716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
GNGGRGGRAALPAGATPPAAAAAAAIGIRSRTGASRSGTGKCSVVALVAF
AAVAAVFALSAAAATTTTAMAAGGGVRRSLSSCRATCQSLASSRTKLAPL
RRRRRAAARPSVLAAKTTGLTGPAT
back to top

mRNA from alignment at H-canaliculatus_F_contig1332:21218..21592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1332.2716.1 ID=mRNA_H-canaliculatus_F_contig1332.2716.1|Name=mRNA_H-canaliculatus_F_contig1332.2716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:21218..21592+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAATGGAGGGAGAGGAGGGCGCGCAGCTTTACCTGCGGGAGCAACGCC
GCCAGCGGCGGCGGCGGCGGCGGCGATCGGGATCCGTTCGCGGACTGGAG
CGTCGAGAAGCGGGACCGGGAAGTGTTCGGTCGTAGCCCTGGTGGCGTTT
GCGGCGGTGGCCGCGGTATTCGCCTTATCGGCGGCGGCGGCGACGACGAC
GACAGCGATGGCGGCGGGAGGTGGTGTGCGGAGGAGTCTCTCGTCCTGCC
GCGCGACGTGTCAATCGCTCGCATCGTCGCGGACAAAGCTGGCGCCGCTG
CGGCGCCGGCGACGTGCGGCAGCTCGACCGTCAGTGCTAGCAGCGAAGAC
GACCGGGCTTACAGGACCGGCAACC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1332:21218..21592+

>mRNA_H-canaliculatus_F_contig1332.2716.1 ID=mRNA_H-canaliculatus_F_contig1332.2716.1|Name=mRNA_H-canaliculatus_F_contig1332.2716.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1332:21218..21592+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAATGGAGGGAGAGGAGGGCGCGCAGCTTTACCTGCGGGAGCAACGCC
GCCAGCGGCGGCGGCGGCGGCGGCGATCGGGATCCGTTCGCGGACTGGAG
CGTCGAGAAGCGGGACCGGGAAGTGTTCGGTCGTAGCCCTGGTGGCGTTT
GCGGCGGTGGCCGCGGTATTCGCCTTATCGGCGGCGGCGGCGACGACGAC
GACAGCGATGGCGGCGGGAGGTGGTGTGCGGAGGAGTCTCTCGTCCTGCC
GCGCGACGTGTCAATCGCTCGCATCGTCGCGGACAAAGCTGGCGCCGCTG
CGGCGCCGGCGACGTGCGGCAGCTCGACCGTCAGTGCTAGCAGCGAAGAC
GACCGGGCTTACAGGACCGGCAACCGGGAATGGAGGGAGAGGAGGGCGCG
CAGCTTTACCTGCGGGAGCAACGCCGCCAGCGGCGGCGGCGGCGGCGGCG
ATCGGGATCCGTTCGCGGACTGGAGCGTCGAGAAGCGGGACCGGGAAGTG
TTCGGTCGTAGCCCTGGTGGCGTTTGCGGCGGTGGCCGCGGTATTCGCCT
TATCGGCGGCGGCGGCGACGACGACGACAGCGATGGCGGCGGGAGGTGGT
GTGCGGAGGAGTCTCTCGTCCTGCCGCGCGACGTGTCAATCGCTCGCATC
GTCGCGGACAAAGCTGGCGCCGCTGCGGCGCCGGCGACGTGCGGCAGCTC
GACCGTCAGTGCTAGCAGCGAAGACGACCGGGCTTACAGGACCGGCAACC
back to top