mRNA_H-canaliculatus_F_contig13284.2684.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13284.2684.1
Unique NamemRNA_H-canaliculatus_F_contig13284.2684.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13284.2684.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.160e-12
Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:    1 EFQDNGIQGAGVLYPSPASRFGARDDRGPSSPGMAAAGYLLFDGSFEGFGGELARGSSASGPAFVDTTSVSPYFASLERGSGGGGEGHCDPRGRQRRYYLDGLGNGDGDDDDAHPTRSPHFA 366
            EFQD G +G GVLYPSPASRFGARD  GPSS   +    L F     G G +   GSS++        +VSPYFA+     G            + RY+       +G DDD HPT SP+FA
Sbjct:  477 EFQDQGFRGEGVLYPSPASRFGARDT-GPSSSSSSRMPGLSFSAG-GGVGDDNLPGSSSA--------AVSPYFAASFEDDG------------KSRYH-------EGYDDDGHPTSSPYFA 569
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BLAST of mRNA_H-canaliculatus_F_contig13284.2684.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 7.080e-6
Identity = 36/75 (48.00%), Postives = 39/75 (52.00%), Query Frame = 1 
Query:    1 EFQDNGIQGAGVLYPSPASRFGARDDRGPSSPGMAAAGYLLFDGSFEGFGGELARGSSASGPAFVDTTSVSPYFA 225
            E  D G +G GVLYPSPASRFGARD  GPSS      G     G   G G +   GSS +         VSPYFA
Sbjct:  399 EAMDEGSRGEGVLYPSPASRFGARDT-GPSSSSWRMPGLSFIPGG--GIGDDNVPGSSVA---------VSPYFA 461
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13284.2684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9D8_ECTSI6.160e-1242.62MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWV7_9PHAE7.080e-648.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13284contigH-canaliculatus_F_contig13284:49..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue7.4e-11
Seed eggNOG ortholog2880.D7G9D8
Preferred nameMLH3
KEGG koko:K08739
KEGG Pathwayko03430,map03430
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005712,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:1990837
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1977@2759
Ec32 ortholog descriptionMutL protein homolog 3
Ec32 orthologEc-28_000540.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.8608031-CDS-H-canaliculatus_F_contig13284:48..4141622929065.8608031-CDS-H-canaliculatus_F_contig13284:48..414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13284 49..414 +
1696845666.6520169-CDS-H-canaliculatus_F_contig13284:48..4141696845666.6520169-CDS-H-canaliculatus_F_contig13284:48..414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13284 49..414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13284.2684.1prot_H-canaliculatus_F_contig13284.2684.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13284 49..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13284.2684.1

>prot_H-canaliculatus_F_contig13284.2684.1 ID=prot_H-canaliculatus_F_contig13284.2684.1|Name=mRNA_H-canaliculatus_F_contig13284.2684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
EFQDNGIQGAGVLYPSPASRFGARDDRGPSSPGMAAAGYLLFDGSFEGFG
GELARGSSASGPAFVDTTSVSPYFASLERGSGGGGEGHCDPRGRQRRYYL
DGLGNGDGDDDDAHPTRSPHFA
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mRNA from alignment at H-canaliculatus_F_contig13284:49..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13284.2684.1 ID=mRNA_H-canaliculatus_F_contig13284.2684.1|Name=mRNA_H-canaliculatus_F_contig13284.2684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=367bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13284:49..415+ (Hapterophycus canaliculatus Oshoro5f female)
GAGTTCCAAGACAACGGGATCCAGGGTGCGGGTGTTCTTTACCCTTCCCC
CGCCTCGCGTTTCGGCGCTCGTGACGACCGAGGCCCATCCTCTCCAGGCA
TGGCCGCGGCGGGCTACCTGCTGTTCGACGGCTCCTTCGAAGGCTTTGGC
GGAGAACTCGCCAGGGGAAGCAGCGCCAGCGGCCCCGCCTTCGTCGACAC
TACCTCGGTGTCTCCGTACTTCGCAAGCCTCGAACGAGGCAGCGGTGGAG
GCGGCGAGGGTCACTGCGATCCTCGCGGTCGGCAGCGGCGCTACTACCTC
GATGGCCTCGGCAACGGCGACGGCGATGACGACGACGCGCATCCGACCAG
GTCGCCGCACTTTGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13284:49..415+

>mRNA_H-canaliculatus_F_contig13284.2684.1 ID=mRNA_H-canaliculatus_F_contig13284.2684.1|Name=mRNA_H-canaliculatus_F_contig13284.2684.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13284:49..415+ (Hapterophycus canaliculatus Oshoro5f female)
GAGTTCCAAGACAACGGGATCCAGGGTGCGGGTGTTCTTTACCCTTCCCC
CGCCTCGCGTTTCGGCGCTCGTGACGACCGAGGCCCATCCTCTCCAGGCA
TGGCCGCGGCGGGCTACCTGCTGTTCGACGGCTCCTTCGAAGGCTTTGGC
GGAGAACTCGCCAGGGGAAGCAGCGCCAGCGGCCCCGCCTTCGTCGACAC
TACCTCGGTGTCTCCGTACTTCGCAAGCCTCGAACGAGGCAGCGGTGGAG
GCGGCGAGGGTCACTGCGATCCTCGCGGTCGGCAGCGGCGCTACTACCTC
GATGGCCTCGGCAACGGCGACGGCGATGACGACGACGCGCATCCGACCAG
GTCGCCGCACTTTGCGGAGTTCCAAGACAACGGGATCCAGGGTGCGGGTG
TTCTTTACCCTTCCCCCGCCTCGCGTTTCGGCGCTCGTGACGACCGAGGC
CCATCCTCTCCAGGCATGGCCGCGGCGGGCTACCTGCTGTTCGACGGCTC
CTTCGAAGGCTTTGGCGGAGAACTCGCCAGGGGAAGCAGCGCCAGCGGCC
CCGCCTTCGTCGACACTACCTCGGTGTCTCCGTACTTCGCAAGCCTCGAA
CGAGGCAGCGGTGGAGGCGGCGAGGGTCACTGCGATCCTCGCGGTCGGCA
GCGGCGCTACTACCTCGATGGCCTCGGCAACGGCGACGGCGATGACGACG
ACGCGCATCCGACCAGGTCGCCGCACTTTGCG
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