mRNA_H-canaliculatus_F_contig1328.2681.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1328.2681.1
Unique NamemRNA_H-canaliculatus_F_contig1328.2681.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1328.2681.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 6.860e-80
Identity = 126/200 (63.00%), Postives = 141/200 (70.50%), Query Frame = 1 
Query:    1 MPLRHIQEFIGLSGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRYYREEVIPTALQLYASLPQDVLEGVDLEVGHTLPDSVFVVTGTTRPSWPRWDGGSPAVAISPAIEGSGTSRGXXXXXXXXXXXE----------APRARGPCGGGIGCTATTGFVPGPWVVFRVARGDYLDFYRNQSAALDQVVGVSAAEVEQMLM 570
            MPL  I+ FIG+ GGPTPRDAVLLKSLL+VHEGIAWAVDRPHYR YREE+IPTAL+LYASL QDVLEGVDLEVGHTLP+S+FVVTGT RPSWPRW G   A   +P +   G  RG                      +PR     G G G T    F+PGPWVVFRVARGDYL+FYR+Q+A LDQ VG S AE+E MLM
Sbjct:    1 MPLSRIRAFIGVDGGPTPRDAVLLKSLLIVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAGRGSNDVDGPDTTRNNGSGGTGFGRSPREAS--GRGRGMTRAREFLPGPWVVFRVARGDYLEFYRDQAAVLDQAVGGSVAEMENMLM 198
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BLAST of mRNA_H-canaliculatus_F_contig1328.2681.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 4.310e-70
Identity = 125/202 (61.88%), Postives = 140/202 (69.31%), Query Frame = 1 
Query:    1 MPLRHIQEFIGLSGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRYYREEVIPTALQLYASLPQDVLEGVDLEVGHTLPDSVFVVTGTTRPSWPRWDGGSPAVAISPAIEGSGTSRGXXXXXXXXXXXEAPRARGPCGGGIG----------CTATTG--FVPGPWVVFRVARGDYLDFYRNQSAALDQVVGVSAAEVEQMLM 570
            MPL  I+ FIG+ GGPTPRDAVLLKSLLVVHEGIAWAVDRPHYR YREE+IPTAL+LYASL QDVLEGVDLEVGHTLP+S+FVVTGT RPSWPRW G   A   +P +   G  RG              R+ G  G G G          C       F+PGPWVVF VAR DYL+FYR+Q+A LDQ VG SA+E+E MLM
Sbjct:  733 MPLSRIRAFIGVDGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAGRGSNDVSDPNIR----RSNGSGGTGFGRSPREASDRGCVMMRAREFLPGPWVVFHVARADYLEFYRDQAAVLDQAVGGSASEMENMLM 930
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1328.2681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI6.860e-8063.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE4.310e-7061.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1328contigH-canaliculatus_F_contig1328:10607..12095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003450.1
Exons2
Model size573
Cds size573
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.3945384-CDS-H-canaliculatus_F_contig1328:10606..107371622929065.3945384-CDS-H-canaliculatus_F_contig1328:10606..10737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 10607..10737 +
1696845666.4563038-CDS-H-canaliculatus_F_contig1328:10606..107371696845666.4563038-CDS-H-canaliculatus_F_contig1328:10606..10737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 10607..10737 +
1622929065.413773-CDS-H-canaliculatus_F_contig1328:11653..120951622929065.413773-CDS-H-canaliculatus_F_contig1328:11653..12095Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 11654..12095 +
1696845666.464832-CDS-H-canaliculatus_F_contig1328:11653..120951696845666.464832-CDS-H-canaliculatus_F_contig1328:11653..12095Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1328 11654..12095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1328.2681.1prot_H-canaliculatus_F_contig1328.2681.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1328 10607..12095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1328.2681.1

>prot_H-canaliculatus_F_contig1328.2681.1 ID=prot_H-canaliculatus_F_contig1328.2681.1|Name=mRNA_H-canaliculatus_F_contig1328.2681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MPLRHIQEFIGLSGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRYYREEV
IPTALQLYASLPQDVLEGVDLEVGHTLPDSVFVVTGTTRPSWPRWDGGSP
AVAISPAIEGSGTSRGGGGGGTGSGGGEAPRARGPCGGGIGCTATTGFVP
GPWVVFRVARGDYLDFYRNQSAALDQVVGVSAAEVEQMLM*
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mRNA from alignment at H-canaliculatus_F_contig1328:10607..12095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1328.2681.1 ID=mRNA_H-canaliculatus_F_contig1328.2681.1|Name=mRNA_H-canaliculatus_F_contig1328.2681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1328:10607..12095+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCTGCGACATATCCAGGAGTTCATCGGTCTCAGCGGAGGCCCGAC
GCCTCGAGACGCCGTGCTCCTCAAGTCCTTGCTTGTCGTCCACGAAGGGA
TCGCCTGGGCCGTGGATCGCCCTCATTACAGGTGCTGTTTCCCGGCCATT
GTTTTACCTTGGTTCAGGGCTACATGCGAGGACCTATATCGCAGCCGTTG
ATTTGAGACAACGTATTGGTTGATTGTTGCGTGGACGACACGTGCACGTA
GTCTGCGCAACCGACTGCCACGAAGGGGAAATATCAAAAGAGACGCGTGT
TTTTTCGTGGGTGAGGTCGAGCACAGAGTCACACATCCAACGAACAGTTA
GCTGGCGAGGGGACCGCCCCGGGGACACGCAGAAGCTGAGATTCAACCCT
CAATGACGCCATATTTTGTTAAGTGAGCAGTTGTCCACTGCGCTACCAAG
TCAGCCACTGCGCTACCAAGTCAGCTGACTGGGTAGCGCAGTGGAAAGCT
GCCTACTTAACAAGCTCGTGCCAAAATACCTTGCCTTTGAAGTTGAAGTA
CAAGTCATCGCACATTGCTAGCCCTCCTCTCTCACAGGGTCGCCAACCGT
TTCCCCCGCTCGATCCTACCTGAGCCGTCGTGAGCGGTGGTGTTGCTAAT
CTTCCTTCCTACGTGTCGAAAGCGACAAAAATTCCGCCACCCGCAGCGCA
TCTCTTCCCTAACGCATGAAGTCTTGGGTGAATTTCCATGTAGATTATCT
CACACAAACGCTGCCCCCGCGCTCATCTTCAAGACTAAGGCGAGGGAGAC
AAACGCATGCGTGTTCCCACCCGGCGAGCAAAGCGCGGCGCCAGTGTTCG
ATCCTCTACGTCGCGCTCACCGAAAAGAGAAGATCGAACCTGACACATCC
CGGGCCGTCCACATGATGCGGCGAGGATTTTCTGATGCCATCGCAATCAG
CACGCCCCGCCTCCCCTCGAAGCCCCACCTCCTCGAACGACGACACACGC
GTCAACGGCACCAAAACAACAAGCACGAAAAAAAACTGCTACGACAGGTA
TTACCGAGAAGAAGTGATCCCGACGGCCCTGCAGCTGTACGCCTCCCTCC
CGCAAGACGTGCTGGAAGGGGTTGATCTCGAGGTGGGGCACACGCTACCC
GACAGCGTTTTCGTTGTCACCGGCACCACCCGCCCTTCCTGGCCTCGCTG
GGACGGAGGCTCGCCGGCGGTGGCAATATCCCCGGCGATCGAAGGCAGCG
GCACCAGCAGAGGTGGCGGGGGTGGCGGTACAGGTAGTGGCGGAGGCGAA
GCACCGCGCGCCAGAGGGCCGTGCGGTGGCGGGATAGGTTGTACCGCCAC
GACAGGGTTCGTGCCGGGGCCGTGGGTCGTCTTTCGTGTGGCTCGCGGGG
ACTACTTGGATTTCTATCGAAACCAATCAGCGGCGCTCGACCAAGTGGTG
GGAGTTTCGGCCGCGGAGGTGGAGCAAATGCTGATGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1328:10607..12095+

>mRNA_H-canaliculatus_F_contig1328.2681.1 ID=mRNA_H-canaliculatus_F_contig1328.2681.1|Name=mRNA_H-canaliculatus_F_contig1328.2681.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1328:10607..12095+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCTGCGACATATCCAGGAGTTCATCGGTCTCAGCGGAGGCCCGAC
GCCTCGAGACGCCGTGCTCCTCAAGTCCTTGCTTGTCGTCCACGAAGGGA
TCGCCTGGGCCGTGGATCGCCCTCATTACAGATGCCCCTGCGACATATCC
AGGAGTTCATCGGTCTCAGCGGAGGCCCGACGCCTCGAGACGCCGTGCTC
CTCAAGTCCTTGCTTGTCGTCCACGAAGGGATCGCCTGGGCCGTGGATCG
CCCTCATTACAGGTATTACCGAGAAGAAGTGATCCCGACGGCCCTGCAGC
TGTACGCCTCCCTCCCGCAAGACGTGCTGGAAGGGGTTGATCTCGAGGTG
GGGCACACGCTACCCGACAGCGTTTTCGTTGTCACCGGCACCACCCGCCC
TTCCTGGCCTCGCTGGGACGGAGGCTCGCCGGCGGTGGCAATATCCCCGG
CGATCGAAGGCAGCGGCACCAGCAGAGGTGGCGGGGGTGGCGGTACAGGT
AGTGGCGGAGGCGAAGCACCGCGCGCCAGAGGGCCGTGCGGTGGCGGGAT
AGGTTGTACCGCCACGACAGGGTTCGTGCCGGGGCCGTGGGTCGTCTTTC
GTGTGGCTCGCGGGGACTACTTGGATTTCTATCGAAACCAATCAGCGGCG
CTCGACCAAGTGGTGGGAGTTTCGGCCGCGGAGGTGGAGCAAATGCTGAT
GTAGGTATTACCGAGAAGAAGTGATCCCGACGGCCCTGCAGCTGTACGCC
TCCCTCCCGCAAGACGTGCTGGAAGGGGTTGATCTCGAGGTGGGGCACAC
GCTACCCGACAGCGTTTTCGTTGTCACCGGCACCACCCGCCCTTCCTGGC
CTCGCTGGGACGGAGGCTCGCCGGCGGTGGCAATATCCCCGGCGATCGAA
GGCAGCGGCACCAGCAGAGGTGGCGGGGGTGGCGGTACAGGTAGTGGCGG
AGGCGAAGCACCGCGCGCCAGAGGGCCGTGCGGTGGCGGGATAGGTTGTA
CCGCCACGACAGGGTTCGTGCCGGGGCCGTGGGTCGTCTTTCGTGTGGCT
CGCGGGGACTACTTGGATTTCTATCGAAACCAATCAGCGGCGCTCGACCA
AGTGGTGGGAGTTTCGGCCGCGGAGGTGGAGCAAATGCTGATGTAG
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