mRNA_H-canaliculatus_F_contig13279.2677.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13279.2677.1
Unique NamemRNA_H-canaliculatus_F_contig13279.2677.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13279.2677.1 vs. uniprot
Match: D8LCY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY6_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 2.690e-57
Identity = 132/267 (49.44%), Postives = 151/267 (56.55%), Query Frame = 1 
Query:    1 PEPILGPNGWVRPPXXXXXVNRIIGRTTALRLKSGEFVQHKMGLMKRTQAYARRSNVPVDNLVTFSIINPHTQRRYNVTREFCAAPCYATIYKRLLRDTVRKNLSLVPILSRQAPSARAXXXXXXXXXXXXXXXXXPTAGDPLRAGDGXXXXXXXXXXAPSDSGRLRDEDSGRSSKAPSALPPL---------AAAERKTINGLSGRGS---------APPTRNHQLPRGPGGIDILSGPAP-------------HVRTVSGADAAA 708
            PEP+LGP+GWV PP     V RIIGRTTALRL+SGEFVQH+ G MKRTQ+YA+R+N+PVDNLVTFSIINPHTQRRYNVTREFCAAP YA IYKRLL+DT+RKNLSL P+++RQAPS+                     AGDP RA             +    GR RD     S  A                +             GS         +PP R+HQLPRGPGGIDILS PA              HVR+VS AD  A
Sbjct:  432 PEPVLGPHGWVYPPPP---VPRIIGRTTALRLRSGEFVQHRSGFMKRTQSYAKRNNIPVDNLVTFSIINPHTQRRYNVTREFCAAPYYAAIYKRLLKDTLRKNLSLAPVVTRQAPSSARRVADATAAL---------AAGDPSRASS--------HGGSSGSDGRSRDAAERPSMSAXXXXXXXXXXXXXXXXSPXXXXXXXXXXXNGSRHHPRSASLSPPRRSHQLPRGPGGIDILSCPAKDPPLEGGGGAGRMHVRSVSSADVTA 678
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BLAST of mRNA_H-canaliculatus_F_contig13279.2677.1 vs. uniprot
Match: A0A6H5KTV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV3_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 8.270e-54
Identity = 151/268 (56.34%), Postives = 169/268 (63.06%), Query Frame = 1 
Query:    1 PEPILGPNGWVRPPXXXXXVNRIIGRTTALRLKSGEFVQHKMGLMKRTQAYARRSNVPVDNLVTFSIINPHTQRRYNVTREFCAAPCYATIYKRLLRDTVRKNLSLVPILSRQAPSARAXXXXXXXXXXXXXXXXXPTAGDPLRAGDGXXXXXXXXXXAPSDSGRLRDEDSGRSSKAPSALPPLAAAERKTINGLS----------GRGS---------APPTRNHQLPRGPGGIDILSGPAP-------------HVRTVSGADAAA 708
            PEP+LGP+GW  PP     V RIIGRTTALRL+SGEFVQH+ G MKRTQ+YA+R+N+PVDNLVTFSIINPHTQRRYNVTREFCAAP YA IYKRLL+DT+RKNLSL P+++RQAPS+   XXXXXXXXXXXXXXXX              XXXXXXXX     GR RD                 AAER +               G GS         +PP R+H LPRGPGGIDILS PA              HVR+VS AD  A
Sbjct:  483 PEPVLGPHGWTYPPPP---VPRIIGRTTALRLRSGEFVQHRSGFMKRTQSYAKRNNIPVDNLVTFSIINPHTQRRYNVTREFCAAPYYAAIYKRLLKDTLRKNLSLAPVVTRQAPSSARRXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXDGRSRD-----------------AAERPSXXXXXXXXXXXXXXVGNGSRHHPRSASLSPPRRSHPLPRGPGGIDILSCPAKDPPPEGGGGAGRTHVRSVSSADVTA 716
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13279.2677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCY6_ECTSI2.690e-5749.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTV3_9PHAE8.270e-5456.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13279contigH-canaliculatus_F_contig13279:528..1635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue1.5e-52
Seed eggNOG ortholog2880.D8LCY6
KEGG koko:K08737,ko:K11267,ko:K11654
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
EggNOG free text desc.mitotic sister chromatid cohesion
EggNOG OGsCOG0553@1,KOG0385@2759,KOG1525@1,KOG1525@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size716
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929065.175181-CDS-H-canaliculatus_F_contig13279:527..7251622929065.175181-CDS-H-canaliculatus_F_contig13279:527..725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 528..725 +
1696845666.3897636-CDS-H-canaliculatus_F_contig13279:527..7251696845666.3897636-CDS-H-canaliculatus_F_contig13279:527..725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 528..725 +
1622929065.2498486-CDS-H-canaliculatus_F_contig13279:1117..16331622929065.2498486-CDS-H-canaliculatus_F_contig13279:1117..1633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 1118..1633 +
1696845666.4010587-CDS-H-canaliculatus_F_contig13279:1117..16331696845666.4010587-CDS-H-canaliculatus_F_contig13279:1117..1633Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13279 1118..1633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13279.2677.1prot_H-canaliculatus_F_contig13279.2677.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13279 528..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13279.2677.1

>prot_H-canaliculatus_F_contig13279.2677.1 ID=prot_H-canaliculatus_F_contig13279.2677.1|Name=mRNA_H-canaliculatus_F_contig13279.2677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=238bp
PEPILGPNGWVRPPPPPPPVNRIIGRTTALRLKSGEFVQHKMGLMKRTQA
YARRSNVPVDNLVTFSIINPHTQRRYNVTREFCAAPCYATIYKRLLRDTV
RKNLSLVPILSRQAPSARAAAAAAAATAAAAAAAALPTAGDPLRAGDGGS
GGGVVVAAAPSDSGRLRDEDSGRSSKAPSALPPLAAAERKTINGLSGRGS
APPTRNHQLPRGPGGIDILSGPAPHVRTVSGADAAAVE
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mRNA from alignment at H-canaliculatus_F_contig13279:528..1635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13279.2677.1 ID=mRNA_H-canaliculatus_F_contig13279.2677.1|Name=mRNA_H-canaliculatus_F_contig13279.2677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13279:528..1635+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGAGCCCATCTTGGGGCCCAACGGATGGGTGCGCCCCCCCCCGCCTCC
TCCTCCGGTGAACCGGATCATCGGACGCACGACCGCGCTGCGGCTCAAGT
CGGGGGAGTTCGTGCAGCACAAGATGGGTTTGATGAAGAGGACGCAGGCG
TACGCGAGGCGGAGCAATGTCCCCGTAGACAACCTCGTCACCTTCAGCGT
GAGTGTTGGTGTTTGTTGGAACGGCCCGTGTTTGCAGGCCCTTGCCCCTT
ATTTTCGTCTTTTTTTCCCTTCGGATGTTGTTTTTAAGGCGGGAACGTTT
CCCTGGTACTGACTGGGGGAGTTTGTTGCATGCATCCATGCGTTTATGTG
TGTTTGTGTGTGTATTTGTGTATGTCCGTCTCTTGGTGCAGCTGTCGCCT
GCCTCCTCGATTTCGAGTGAGGAAGATCCATCGGGGATCGATCCATCGAT
CCCCGATAGCACCAAGAAAGTATGCGCATGCGGGCACGCTTCGCCGCCGT
TCCGACGCGTAACCCTTCCCGCCGGCAAAGGATTCGTCGCCTGACTCCCC
CCTCCCCTCCCCGCCCTTCCCTCGCCCTGACGAGACGCAGATCATCAACC
CTCACACCCAGCGCCGCTACAATGTCACGCGCGAGTTCTGCGCTGCGCCC
TGCTACGCGACCATCTACAAACGCCTCCTGAGGGACACCGTGCGCAAGAA
CCTCTCCCTCGTGCCGATTCTCAGCAGGCAGGCGCCGTCCGCGCGCGCTG
CAGCCGCAGCCGCAGCCGCAACCGCCGCCGCCGCAGCAGCAGCAGCTTTG
CCCACGGCCGGTGATCCATTGCGAGCAGGAGACGGGGGTAGCGGGGGAGG
TGTCGTCGTTGCCGCCGCCCCTAGCGACAGCGGTCGCCTCAGAGATGAAG
ACAGCGGACGGTCCTCCAAGGCCCCGTCCGCTCTGCCCCCCCTCGCCGCA
GCAGAACGGAAGACAATCAACGGGCTCTCCGGCCGCGGCTCCGCGCCGCC
GACGAGAAACCACCAGTTGCCCCGGGGGCCCGGCGGAATCGACATCTTGT
CCGGCCCGGCCCCGCACGTGCGGACGGTGAGCGGCGCGGACGCCGCCGCG
GTGGAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13279:528..1635+

>mRNA_H-canaliculatus_F_contig13279.2677.1 ID=mRNA_H-canaliculatus_F_contig13279.2677.1|Name=mRNA_H-canaliculatus_F_contig13279.2677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13279:528..1635+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGAGCCCATCTTGGGGCCCAACGGATGGGTGCGCCCCCCCCCGCCTCC
TCCTCCGGTGAACCGGATCATCGGACGCACGACCGCGCTGCGGCTCAAGT
CGGGGGAGTTCGTGCAGCACAAGATGGGTTTGATGAAGAGGACGCAGGCG
TACGCGAGGCGGAGCAATGTCCCCGTAGACAACCTCGTCACCTTCAGCCC
CGAGCCCATCTTGGGGCCCAACGGATGGGTGCGCCCCCCCCCGCCTCCTC
CTCCGGTGAACCGGATCATCGGACGCACGACCGCGCTGCGGCTCAAGTCG
GGGGAGTTCGTGCAGCACAAGATGGGTTTGATGAAGAGGACGCAGGCGTA
CGCGAGGCGGAGCAATGTCCCCGTAGACAACCTCGTCACCTTCAGCATCA
TCAACCCTCACACCCAGCGCCGCTACAATGTCACGCGCGAGTTCTGCGCT
GCGCCCTGCTACGCGACCATCTACAAACGCCTCCTGAGGGACACCGTGCG
CAAGAACCTCTCCCTCGTGCCGATTCTCAGCAGGCAGGCGCCGTCCGCGC
GCGCTGCAGCCGCAGCCGCAGCCGCAACCGCCGCCGCCGCAGCAGCAGCA
GCTTTGCCCACGGCCGGTGATCCATTGCGAGCAGGAGACGGGGGTAGCGG
GGGAGGTGTCGTCGTTGCCGCCGCCCCTAGCGACAGCGGTCGCCTCAGAG
ATGAAGACAGCGGACGGTCCTCCAAGGCCCCGTCCGCTCTGCCCCCCCTC
GCCGCAGCAGAACGGAAGACAATCAACGGGCTCTCCGGCCGCGGCTCCGC
GCCGCCGACGAGAAACCACCAGTTGCCCCGGGGGCCCGGCGGAATCGACA
TCTTGTCCGGCCCGGCCCCGCACGTGCGGACGGTGAGCGGCGCGGACGCC
GCCGCGGTGGAGATCATCAACCCTCACACCCAGCGCCGCTACAATGTCAC
GCGCGAGTTCTGCGCTGCGCCCTGCTACGCGACCATCTACAAACGCCTCC
TGAGGGACACCGTGCGCAAGAACCTCTCCCTCGTGCCGATTCTCAGCAGG
CAGGCGCCGTCCGCGCGCGCTGCAGCCGCAGCCGCAGCCGCAACCGCCGC
CGCCGCAGCAGCAGCAGCTTTGCCCACGGCCGGTGATCCATTGCGAGCAG
GAGACGGGGGTAGCGGGGGAGGTGTCGTCGTTGCCGCCGCCCCTAGCGAC
AGCGGTCGCCTCAGAGATGAAGACAGCGGACGGTCCTCCAAGGCCCCGTC
CGCTCTGCCCCCCCTCGCCGCAGCAGAACGGAAGACAATCAACGGGCTCT
CCGGCCGCGGCTCCGCGCCGCCGACGAGAAACCACCAGTTGCCCCGGGGG
CCCGGCGGAATCGACATCTTGTCCGGCCCGGCCCCGCACGTGCGGACGGT
GAGCGGCGCGGACGCCGCCGCGGTGGAG
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