mRNA_H-canaliculatus_F_contig13278.2676.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13278.2676.1
Unique NamemRNA_H-canaliculatus_F_contig13278.2676.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: D7FUE2_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE2_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.900e-48
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQPAAST 255
            MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQ  +ST
Sbjct:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQAPSST 85
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A835YX65_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.690e-33
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQ 240
            MP IEVGTVGGGTSLPAQAACLDV+GCRGA+QAP  PG NA+Q+A+V+A A LAGELSL+AALASNQLVRAHMQHNRK Q
Sbjct:  485 MPCIEVGTVGGGTSLPAQAACLDVIGCRGASQAPDAPGANARQLAQVIAAAVLAGELSLMAALASNQLVRAHMQHNRKKQ 564
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S2FDH1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDH1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.760e-32
Identity = 62/84 (73.81%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQPAAS 252
            MPSIEVGTVGGGTSLPAQA CLD++G RGA++AP  PG+NAQ++ ++VA A +AGELSL++ALA+N+LV+AHMQHNRKPQPAAS
Sbjct:  370 MPSIEVGTVGGGTSLPAQAQCLDIMGVRGASRAPKNPGDNAQKLGRMVAAAVMAGELSLLSALAANELVKAHMQHNRKPQPAAS 453
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S0ST55_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0ST55_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.660e-29
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAP-GRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQPAAST 255
            MPSIEVGTVGGGT LPAQAACLD++  RGA++ P  +PG+NA+++A+V+  A LAGELSL+AALA+N LVR+HMQHNRKP  +A T
Sbjct:   87 MPSIEVGTVGGGTHLPAQAACLDILDVRGASKGPHSQPGDNARKLAQVIGAAVLAGELSLIAALAANHLVRSHMQHNRKPTESAPT 172
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A1E7FDJ4_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDJ4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.710e-28
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGTSLPAQAACL+ +GCRG    PG   +NA+++A VVA ATLAGELSL+AALA+N LV+AHM HNRKP
Sbjct:  141 MPSIEVGTVGGGTSLPAQAACLEAIGCRGGASTPG---DNARKLATVVAAATLAGELSLLAALAANTLVQAHMVHNRKP 216
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S1CUP3_9STRA (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUP3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.530e-27
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKP 237
            MPSIEVGTVGGGT LPAQAACL  +G +G  +    PG+NA+Q+A VVA AT+AGELSL+AALASN LV AHM HNRKP
Sbjct:   23 MPSIEVGTVGGGTGLPAQAACLKAIGVKGGGE---NPGDNAKQLAHVVAAATMAGELSLMAALASNSLVAAHMTHNRKP 98
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S1Y0Q7_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.710e-27
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQP 243
            MPS+EVGTVGGGTSLPAQ ACL+V+   GA++AP  PG NAQ ++K +AGA LAGE+SL+AALASNQLVRAHM HNRK  P
Sbjct:  366 MPSLEVGTVGGGTSLPAQRACLEVMNVAGASRAPKAPGTNAQALSKAIAGAVLAGEMSLMAALASNQLVRAHMIHNRKKAP 446
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S4W3S1_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W3S1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.080e-26
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQPAAST 255
            MPSIEVGTVGGGTSLPAQ+ACL  +GC+G       PG+NA+Q+A VVA AT+AGELSL+AALA+N LV+AHM HNRKP  A ST
Sbjct:  530 MPSIEVGTVGGGTSLPAQSACLKAIGCKGGGV---NPGDNAKQLAHVVAAATMAGELSLLAALAANTLVQAHMTHNRKPTTAKST 611
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BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A7S4ALR6_9STRA (3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALR6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.370e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQP 243
            MPSIEVGTVGGGTSLPAQAACL+ +GC+G    PG    NAQ++A VVA AT+AGELSL+AALA+N LV+AHM HNRKP P
Sbjct:  555 MPSIEVGTVGGGTSLPAQAACLEAIGCKGGGSTPGA---NAQKLATVVAAATMAGELSLLAALAANTLVQAHMVHNRKPAP 632
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Match: A0A812U1Q8_SYMMI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U1Q8_SYMMI)

HSP 1 Score: 102 bits (255), Expect = 1.150e-25
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1 
Query:    1 MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAGATLAGELSLVAALASNQLVRAHMQHNRKPQPAA 249
            MPSIEVGTVGGGT LPAQ+ CLD+ G RGA++     G+NA+Q+A++V  + LAGELSL+AALA+N LVR+HMQHNRKP   A
Sbjct:   87 MPSIEVGTVGGGTHLPAQSGCLDICGVRGASRVAA--GDNARQLAQIVGASVLAGELSLMAALAANHLVRSHMQHNRKPAAPA 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13278.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE2_ECTSI5.900e-4896.47Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A835YX65_9STRA5.690e-3382.503-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S2FDH1_9STRA1.760e-3273.813-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S0ST55_9STRA1.660e-2967.44Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A1E7FDJ4_9STRA4.710e-2873.42Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S1CUP3_9STRA2.530e-2770.89Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
A0A7S1Y0Q7_9STRA2.710e-2771.603-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S4W3S1_9STRA3.080e-2669.413-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A7S4ALR6_9STRA4.370e-2671.603-hydroxy-3-methylglutaryl coenzyme A reductase n=... [more]
A0A812U1Q8_SYMMI1.150e-2565.06Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13278contigH-canaliculatus_F_contig13278:2344..3013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog159749.K0T6D9
Preferred nameHMG1
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004420,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0006066,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006694,GO:0006696,GO:0006720,GO:0006721,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0010142,GO:0012505,GO:0016020,GO:0016021,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0019287,GO:0019637,GO:0019693,GO:0031090,GO:0031224,GO:0031903,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032991,GO:0033865,GO:0033875,GO:0034032,GO:0034399,GO:0034641,GO:0035383,GO:0042175,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045337,GO:0045338,GO:0046165,GO:0046483,GO:0046490,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0072521,GO:0090407,GO:0097384,GO:0098588,GO:0098805,GO:0098827,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902652,GO:1902653,GO:1902767,GO:1905368,GO:1905369
EggNOG free text desc.Hydroxymethylglutaryl-coenzyme A reductase
EggNOG OGs2XANU@2836,COG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
BiGG ReactioniMM904.YML075C,iND750.YML075C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.93556-CDS-H-canaliculatus_F_contig13278:2343..24641622929064.93556-CDS-H-canaliculatus_F_contig13278:2343..2464Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13278 2344..2464 -
1696845666.3391452-CDS-H-canaliculatus_F_contig13278:2343..24641696845666.3391452-CDS-H-canaliculatus_F_contig13278:2343..2464Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13278 2344..2464 -
1622929064.9714143-CDS-H-canaliculatus_F_contig13278:2876..30131622929064.9714143-CDS-H-canaliculatus_F_contig13278:2876..3013Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13278 2877..3013 -
1696845666.3547862-CDS-H-canaliculatus_F_contig13278:2876..30131696845666.3547862-CDS-H-canaliculatus_F_contig13278:2876..3013Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13278 2877..3013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13278.2676.1prot_H-canaliculatus_F_contig13278.2676.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13278 2344..3013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13278.2676.1

>prot_H-canaliculatus_F_contig13278.2676.1 ID=prot_H-canaliculatus_F_contig13278.2676.1|Name=mRNA_H-canaliculatus_F_contig13278.2676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
MPSIEVGTVGGGTSLPAQAACLDVVGCRGATQAPGRPGENAQQMAKVVAG
ATLAGELSLVAALASNQLVRAHMQHNRKPQPAAST*
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mRNA from alignment at H-canaliculatus_F_contig13278:2344..3013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13278.2676.1 ID=mRNA_H-canaliculatus_F_contig13278.2676.1|Name=mRNA_H-canaliculatus_F_contig13278.2676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=670bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13278:2344..3013- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGATCGAGGTCGGTACCGTTGGCGGCGGCACCAGCCTTCCCGC
ACAGGCGGCGTGCCTGGACGTGGTCGGCTGCCGAGGAGCGACCCAGGCGC
CAGGCAGGCCGGGAGAGAACGCTCAGCAGATGGCCAAGTGAGTCTCTTCT
TTGTGTTAGTGCTGTGACGGTTCAATAAGTGTGACAAGTCGTCTACATTG
AAGGGTGGACATGGAGCTAATACACTTCATGGGGGCACGGAGCAACAACA
CGGAGCCATGGCCCCCCGTTGGTTGTCGGTGACTGGCCTTTTGGGTCGAC
AGAGCTGAGACTGACAACGCGCAGGGGCTGAGCGGACATGATTTGCTGCC
GACAGGGTGGGATGATTGCCATCGCATCGGAGGACACGAGGAAAAGCCTC
GAACGAGGCCCTCTGCCAGCGTCTGCAGAAATTCGTGCGATCGTCCTGCT
TCCCCATCCGTACCCGATGCGTGTGACGGTTGGATCCGCCAGCACTCACA
CCCTTCCTCCCCCTCTGGACTCCCCTCATGTGTGTGCGTCTTCTGTCAGG
GTCGTGGCCGGTGCGACGCTGGCTGGAGAACTGTCTCTCGTGGCAGCCCT
GGCGTCCAACCAGCTCGTGCGTGCCCACATGCAGCACAACCGCAAGCCCC
AGCCCGCGGCGTCGACATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13278:2344..3013-

>mRNA_H-canaliculatus_F_contig13278.2676.1 ID=mRNA_H-canaliculatus_F_contig13278.2676.1|Name=mRNA_H-canaliculatus_F_contig13278.2676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13278:2344..3013- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTCGATCGAGGTCGGTACCGTTGGCGGCGGCACCAGCCTTCCCGC
ACAGGCGGCGTGCCTGGACGTGGTCGGCTGCCGAGGAGCGACCCAGGCGC
CAGGCAGGCCGGGAGAGAACGCTCAGCAGATGGCCAAATGCCTTCGATCG
AGGTCGGTACCGTTGGCGGCGGCACCAGCCTTCCCGCACAGGCGGCGTGC
CTGGACGTGGTCGGCTGCCGAGGAGCGACCCAGGCGCCAGGCAGGCCGGG
AGAGAACGCTCAGCAGATGGCCAAGGTCGTGGCCGGTGCGACGCTGGCTG
GAGAACTGTCTCTCGTGGCAGCCCTGGCGTCCAACCAGCTCGTGCGTGCC
CACATGCAGCACAACCGCAAGCCCCAGCCCGCGGCGTCGACATGAGGTCG
TGGCCGGTGCGACGCTGGCTGGAGAACTGTCTCTCGTGGCAGCCCTGGCG
TCCAACCAGCTCGTGCGTGCCCACATGCAGCACAACCGCAAGCCCCAGCC
CGCGGCGTCGACATGA
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