mRNA_H-canaliculatus_F_contig1326.2669.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1326.2669.1
Unique NamemRNA_H-canaliculatus_F_contig1326.2669.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A6H5L5V8_9PHAE (MsrB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5V8_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 5.010e-139
Identity = 194/227 (85.46%), Postives = 212/227 (93.39%), Query Frame = 3 
Query:  549 MRSSTM-CAALAIIRSTTAFLPTAGPVAGLSRVGSSTTNVAHRSIHRSSPLSMQFWKAPPVSEHTRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFGGTA 1226
            MR ST   AA+A++RS +AF+PT+GPVA L RVGS TT+ AHRS+HRSS L+MQFWK P  S+HTRLAK+PALDKCKPD+EWKE+L+PNT+QVLRGKATEPAGVRKA+GGFDD F+KGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEE+DADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTG VFGGTA
Sbjct:    1 MRPSTQWAAAIALVRSASAFVPTSGPVAALYRVGS-TTSAAHRSVHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDAEWKEQLKPNTYQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGRVFGGTA 226
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A836C9K1_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K1_9STRA)

HSP 1 Score: 259 bits (663), Expect = 7.580e-79
Identity = 126/200 (63.00%), Postives = 145/200 (72.50%), Query Frame = 3 
Query:  621 PVAGLSRVGSSTTNVAHRSIHRSSPLSMQFWKAPPVSEHTRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVE-CTYTGGVFG 1217
            P + L+   SS + +A R   + S + MQFWK+P     T LAK+P LDK K D+E+K  + P  + VLR KATEP  V  A GGFDD  E GTYVC  C TPLY+ SHKFDCGCGWPGFWTNI+DAVYEERD DG R EILCS CGGHLGHVFRGEGF NP PNERHCVNSVS+ FIP GK  GP+ V+ CTY+G V+G
Sbjct:   24 PASSLAITRSSGSQLATRRSIQRSTVRMQFWKSPGPDPSTNLAKEPPLDKMKSDAEYKATMDPVAYSVLRQKATEPRSVTVARGGFDDHTEDGTYVCGCCGTPLYDSSHKFDCGCGWPGFWTNIKDAVYEERDKDGFRAEILCSSCGGHLGHVFRGEGFSNPPPNERHCVNSVSIGFIPRGK--GPEDVQKCTYSGPVYG 221
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: W7U3G1_9STRA (Peptide methionine sulfoxide reductase b5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G1_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.660e-69
Identity = 110/160 (68.75%), Postives = 123/160 (76.88%), Query Frame = 3 
Query:  738 TRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVE-CTYTGGVF 1214
            T LA KPAL K K + EWK+ L P  F+VLR KATEP  V  A GG+DD   KGTYVC GC+TPLY  + KFDCGCGWPGFWTNI+DAVYE+RDADG RCEILCS C GHLGHVFR EGFGNP P+ERHCVNSVS+ F+PEG     DAV+ CTY G V+
Sbjct:   96 TNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT----DAVQPCTYEGPVY 251
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A7S2V6B3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B3_9STRA)

HSP 1 Score: 234 bits (596), Expect = 6.910e-69
Identity = 102/150 (68.00%), Postives = 114/150 (76.00%), Query Frame = 3 
Query:  768 KCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFG 1217
            K + D +W   LRP  ++VLR K TEPAG   ANGGFDD  EKGTY+CAGC TPLY   HKFDCGCGWPGFWTNI+ AVYE+ D DG RCEI+CS CG HLGHVFRGEGF NP PNERHCVNSVS+AF+PEG+ D      CTY G V+G
Sbjct:   80 KSRSDDDWYNTLRPVEYKVLRMKGTEPAGQTVANGGFDDHTEKGTYICAGCSTPLYTSEHKFDCGCGWPGFWTNIKGAVYEKLDKDGFRCEIMCSACGSHLGHVFRGEGFNNPPPNERHCVNSVSIAFLPEGEEDESKVQRCTYNGQVYG 229
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A813KAL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAL6_POLGL)

HSP 1 Score: 197 bits (501), Expect = 1.880e-55
Identity = 96/174 (55.17%), Postives = 115/174 (66.09%), Query Frame = 3 
Query:  711 WKAPPVSEHTRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGC-----RTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFG 1217
            ++ P     T L    A+D   PD+EWK +L  N ++VLR KATEP        GFDD   +G Y CAGC       PLY    KFDCGCGWPGFWTN++DAVYE+RDADGRRCE+LCS C GH+GHVFRGE FG+P  +ERHCVNS+SL F+P     G D V  TY+G V+G
Sbjct:   35 YEEPTQKGSTHLLPTGAVDVKLPDAEWKSKLPENVYKVLRQKATEPGHKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDGHMGHVFRGEAFGHPT-DERHCVNSLSLVFLP---AKGGDKVAPTYSGAVYG 204
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A812INW2_SYMPI (MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812INW2_SYMPI)

HSP 1 Score: 196 bits (497), Expect = 3.180e-55
Identity = 94/151 (62.25%), Postives = 109/151 (72.19%), Query Frame = 3 
Query:  780 DSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGC-----RTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFG 1217
            + EW ++LR N F+VLR KATEP    K   GFDD  + G Y+CAGC     + PLY  S KFDCGCGWPGFWTN+Q AVYE+RDADGRRCEILCS C GH+GHVFRGEGFG    +ERHCVNS+SL F+P     G +AV  +YTG VFG
Sbjct:   33 EKEWSDKLRTNVFKVLRKKATEPGHRIKFPQGFDDHNDSGIYICAGCFAAGQQVPLYTSSMKFDCGCGWPGFWTNVQGAVYEQRDADGRRCEILCSKCEGHMGHVFRGEGFGYCT-DERHCVNSLSLVFLP---AKGGEAVAPSYTGPVFG 179
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A813HSM0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HSM0_POLGL)

HSP 1 Score: 196 bits (497), Expect = 1.010e-51
Identity = 95/174 (54.60%), Postives = 114/174 (65.52%), Query Frame = 3 
Query:  711 WKAPPVSEHTRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGC-----RTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFG 1217
            ++ P     T L    A D   PD+EWK +L  N ++VLR KATEP G      GFDD   +G Y CAGC       PLY    KFDCGCGWPGFWTN++DAVYE+RDADG RCE+LCS C GH+GHVFRGE FG+P  +ERHCVNS+SL F+P     G + V  +YTG V+G
Sbjct:  302 YEEPTQKGSTHLLPTGAKDVSLPDAEWKSKLPENVYKVLRQKATEPGGKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGSRCEVLCSRCDGHMGHVFRGEAFGHPT-DERHCVNSLSLVFLP---AKGGNMVAPSYTGAVYG 471
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A7J6MIT1_PERCH (Peptide methionine sulfoxide reductase B3 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MIT1_PERCH)

HSP 1 Score: 182 bits (461), Expect = 3.600e-50
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 3 
Query:  774 KPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGR-RCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVF 1214
            K D  +KE L P  F+VLR  ATEP G+  A GG+DD F  GTY+C  C TPLY+ SHKFDCGCGWPG+WTNI DAV E  + DG  R EILCS CG HLGHVFRGEG G    +ERHCVN  SL+F P G  +       +YTG VF
Sbjct:   24 KGDDYFKERLTPTQFKVLREAATEPRGITMAKGGWDDNFADGTYLCGACDTPLYDSSHKFDCGCGWPGYWTNIDDAVAERMETDGSGRIEILCSKCGSHLGHVFRGEGMGYAT-DERHCVNGTSLSFKPRGSEE---VKRSSYTGRVF 167
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BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A813HA73_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HA73_POLGL)

HSP 1 Score: 196 bits (497), Expect = 3.650e-49
Identity = 93/159 (58.49%), Postives = 110/159 (69.18%), Query Frame = 3 
Query:  777 PDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGC-----RTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVECTYTGGVFGGTA*SHQ 1238
            PD+EWK +L  N ++VLR KATEP        GFDD   +G Y CAGC       PLY    KFDCGCGWPGFWTN++DAVYE+RDADGRRCE+LCS C GH+GHVFRGE FG+P  +ERHCVNS+SL F+P     G D V  TY+G V+G  A + Q
Sbjct:  509 PDAEWKSKLPENVYKVLRQKATEPGHKLTFPKGFDDHKAEGVYACAGCLAAGFEVPLYTSRMKFDCGCGWPGFWTNVKDAVYEKRDADGRRCEVLCSRCDGHMGHVFRGEAFGHPT-DERHCVNSLSLVFLP---AKGGDKVAPTYSGAVYGSGAMNRQ 663
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Match: A0A0M9G8X6_9TRYP (MsrB domain-containing protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G8X6_9TRYP)

HSP 1 Score: 177 bits (450), Expect = 2.580e-48
Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 3 
Query:  768 KCKPDSEWKEELRPNTFQVLRGKATEPAGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIP 1157
            K KP+SEW+  L P  + +LR K T+P G     G +DD +++G YVCA C+TPLY  + KF CGCGWPGFW +IQ AV E+ D DGRR EI+C+ C  HLGH+FR EGF NP PNERHCVNS S+ FIP
Sbjct:   63 KDKPESEWRATLSPAEYHILREKGTDPVG-----GKYDDLYDEGEYVCAACKTPLYTSAMKFACGCGWPGFWDSIQKAVREQPDKDGRRVEIVCNACNSHLGHIFRHEGFSNPPPNERHCVNSTSILFIP 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1326.2669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5V8_9PHAE5.010e-13985.46MsrB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C9K1_9STRA7.580e-7963.00Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
W7U3G1_9STRA3.660e-6968.75Peptide methionine sulfoxide reductase b5 n=2 Tax=... [more]
A0A7S2V6B3_9STRA6.910e-6968.00Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A813KAL6_POLGL1.880e-5555.17Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812INW2_SYMPI3.180e-5562.25MSRB5 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813HSM0_POLGL1.010e-5154.60Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7J6MIT1_PERCH3.600e-5058.78Peptide methionine sulfoxide reductase B3 n=1 Tax=... [more]
A0A813HA73_POLGL3.650e-4958.49Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A0M9G8X6_9TRYP2.580e-4858.46MsrB domain-containing protein n=1 Tax=Leptomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1326contigH-canaliculatus_F_contig1326:6714..13351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue1.9e-105
Seed eggNOG ortholog2880.D7G3N8
KEGG koko:K07305
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPeptide methionine sulphoxide reductase MrsB
Ec32 orthologEc-00_006660.1
Exons7
Model size2049
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.3147063-UTR-H-canaliculatus_F_contig1326:6713..71181622929064.3147063-UTR-H-canaliculatus_F_contig1326:6713..7118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 6714..7118 +
1696845666.052088-UTR-H-canaliculatus_F_contig1326:6713..71181696845666.052088-UTR-H-canaliculatus_F_contig1326:6713..7118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 6714..7118 +
1622929064.3301165-UTR-H-canaliculatus_F_contig1326:7148..72911622929064.3301165-UTR-H-canaliculatus_F_contig1326:7148..7291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 7149..7291 +
1696845666.0686789-UTR-H-canaliculatus_F_contig1326:7148..72911696845666.0686789-UTR-H-canaliculatus_F_contig1326:7148..7291Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 7149..7291 +
1622929064.4296854-UTR-H-canaliculatus_F_contig1326:12531..133511622929064.4296854-UTR-H-canaliculatus_F_contig1326:12531..13351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 12532..13351 +
1696845666.1562643-UTR-H-canaliculatus_F_contig1326:12531..133511696845666.1562643-UTR-H-canaliculatus_F_contig1326:12531..13351Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1326 12532..13351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.343565-CDS-H-canaliculatus_F_contig1326:7291..73351622929064.343565-CDS-H-canaliculatus_F_contig1326:7291..7335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 7292..7335 +
1696845666.083614-CDS-H-canaliculatus_F_contig1326:7291..73351696845666.083614-CDS-H-canaliculatus_F_contig1326:7291..7335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 7292..7335 +
1622929064.356873-CDS-H-canaliculatus_F_contig1326:8215..83091622929064.356873-CDS-H-canaliculatus_F_contig1326:8215..8309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 8216..8309 +
1696845666.0974944-CDS-H-canaliculatus_F_contig1326:8215..83091696845666.0974944-CDS-H-canaliculatus_F_contig1326:8215..8309Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 8216..8309 +
1622929064.3709471-CDS-H-canaliculatus_F_contig1326:9447..95821622929064.3709471-CDS-H-canaliculatus_F_contig1326:9447..9582Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 9448..9582 +
1696845666.1091595-CDS-H-canaliculatus_F_contig1326:9447..95821696845666.1091595-CDS-H-canaliculatus_F_contig1326:9447..9582Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 9448..9582 +
1622929064.3914475-CDS-H-canaliculatus_F_contig1326:10769..108631622929064.3914475-CDS-H-canaliculatus_F_contig1326:10769..10863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 10770..10863 +
1696845666.123095-CDS-H-canaliculatus_F_contig1326:10769..108631696845666.123095-CDS-H-canaliculatus_F_contig1326:10769..10863Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 10770..10863 +
1622929064.4033372-CDS-H-canaliculatus_F_contig1326:11531..116791622929064.4033372-CDS-H-canaliculatus_F_contig1326:11531..11679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 11532..11679 +
1696845666.1313467-CDS-H-canaliculatus_F_contig1326:11531..116791696845666.1313467-CDS-H-canaliculatus_F_contig1326:11531..11679Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 11532..11679 +
1622929064.417841-CDS-H-canaliculatus_F_contig1326:12365..125311622929064.417841-CDS-H-canaliculatus_F_contig1326:12365..12531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 12366..12531 +
1696845666.1457748-CDS-H-canaliculatus_F_contig1326:12365..125311696845666.1457748-CDS-H-canaliculatus_F_contig1326:12365..12531Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1326 12366..12531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1326.2669.1prot_H-canaliculatus_F_contig1326.2669.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1326 7292..12531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1326.2669.1

>prot_H-canaliculatus_F_contig1326.2669.1 ID=prot_H-canaliculatus_F_contig1326.2669.1|Name=mRNA_H-canaliculatus_F_contig1326.2669.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=227bp
MRSSTMCAALAIIRSTTAFLPTAGPVAGLSRVGSSTTNVAHRSIHRSSPL
SMQFWKAPPVSEHTRLAKKPALDKCKPDSEWKEELRPNTFQVLRGKATEP
AGVRKANGGFDDTFEKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQD
AVYEERDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLA
FIPEGKTDGPDAVECTYTGGVFGGTA*
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mRNA from alignment at H-canaliculatus_F_contig1326:6714..13351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1326.2669.1 ID=mRNA_H-canaliculatus_F_contig1326.2669.1|Name=mRNA_H-canaliculatus_F_contig1326.2669.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:6714..13351+ (Hapterophycus canaliculatus Oshoro5f female)
TCGCTCTGCGCACTTGTCGACGCAAACGTCTTCCCAGCAAATCCGCGTCT
TGTCTTCCGGCGCCGCGGCGTCAATACAGCAGTCACCTACGAGTAGGGAC
GCAGACGCCAGATTGCGCGAGGAGGAGAGAACCATCCGGTCGGTAGTGGT
CGGTGACAGGTTCGCCGAAATCGCTCCGCGTTTTTTTGGGGTATTTGTTG
TTCGTTTGTTCTCTCCCACGCCTACCCGCACAGCCGTGTGGAAAACAAGA
CGGACGTGGGCTTGATTACCGCGCTAATCTACTGCACAGCTTACCAGTGG
GCCAGAATCGCACGGTGTGCTGGGGGAAACCTCTCGTCTGGAGATCTTGT
GCTGTGTGCTGTGTCCTTTACTTGTCTGTTGTGCCGGGATGTCAGGTCAA
GTCTAGCGCTAGGCCCAGTCCAGGCCAAAGTCCAGGCCAAGTCCAGGCCA
AGTCCAGGCTGCTCGGGTGCTCCGTGAATGCATTTGGACTACCAGCGGAC
TTACTCTATTTGGACTTTGCATCCCCTCTGTCTTTCTGCCAGATCCCGTG
TCATACTACTACTTCCTGTGTCCTGATCATGAGGTCCTCCACCATGTGTG
CTGCGCTTGCGATCATTAGGAGGTGAGTTCACAATCCCTCGCCCAGTGCG
TGGGTAACGCTCCTCTGCGCTCGCGTTTCGGGGGGTCAAGAGGTCTGACG
ATGCGGATTTGACGTTGATATGTGATCCCCGCCGTTGTCTCCTAGCTGAG
GTGGCCTAGGTCACATTTGGCCGCTTGTGTCCCACGTTTCACTTTTTACT
GCTGCTGTGCTTGGTTTATGCAAACGAGTCACGAACCGTTCGGGGATCAC
CGACCTCTGGGAGCAAAGGAGCGGAGAGAGCTATGTCCGTCGCCTGTCCA
AACCCCTCTTGAACCCAACATCCAAAATCGAGGAGCGGCAAGCGAGGAGC
TGGAAGTCGGCGAGTCCATCGTTTCTTCTCCTGCAGTACCCAGTACCCAG
TACCCAGTCATGCCGCTTTTCACGAACGGCTGTCAACTGCGGCAACAATC
TGTCTGCAGCGTGCAGCCTAACTCTACCTCTGACCCTTATGGTATGGTCT
ACCGTCGAACGCAGACAGTGATTCGCAGGGAAGCCGTCCATAGTCCATTT
GTACGTTGTGATTGTTTGCGGCTCATAAAGCCTTCACAGCAGTCCTCTAG
TTTATCTACACACTGAAAACCTTCAAGTTGAATACCAAGAGCCACGAGGG
TGATGATCCACCACGACACTTGGCCACCGCACCAGTAAACGTTAGATATC
CCGTGCGTGCAGGCCACCGATACCGATCGAGCTCACCACTCATCTACTGA
TCACTTACCTGTTGACGGAAACGAGCAAGCGTTGATGTATCCGACGAGTA
AACATTAGTGGAAACAGAACGAACGACGACGATCTTCTGCCCCTCGAATA
ACCCCCCCAAGCAACCCCCCCTCCCCATCGATTCGTGCACAAACGTACAC
AGCACAACAGCATTTCTTCCCACGGCAGGACCGGTCGCTGGTCTGTCCCG
CGTCGGCTCGAGTACCACTAACGTTGCTCACCGGAGCATCCACCGAGTGA
GTCATTTCCCAACCCAGGGATCCAGCTCCTTGATGCGTAGTCTACGGCGA
ATGGGGCAACGAAATCAGCCGAACGATGAAACGCATCGAGGAGGAGAGGA
GCGGCGGGAGTTAGCGCTGCTCCCACTTCGCTTGTTCTTCTGGTCCTGTC
TGTTTGCCCTGCCTGCTCTTCTCGCACAACCTGGCTGTCGTTTTGGCCAT
TGATTCGTTCCTTCGTGGCGTTGGGACCGACGTCATCGTTGGTGTACGAT
CAGGACGTGAGGCGGACGGGGCCGCGTTTCAAATCTCCAGCGTTTACAGC
TCGCGAGGAAACGCTCTCTATCTCGGGGCCGGACATGGGAGGGTTTGTGT
TGAGCACCTTGCATAGCGGACCTGATGCGCAGGCCGTAACCAAAAGCAAA
CCAAGGTTGAGGCACAAGAAGGTCGTACGGTGCTCTTGGCATCTTCTTAC
GACTGAAGTGAAGATCGAAACGACCGGTTTGTGCTGGGAGCACCTCGTGC
ACACGTGCACCTCGTGCGTTGAGGCGTTGCAGCACGAGAACGAAGATTAG
GCTCTCCGAGCGACCGCCCATTTCCCCAGAGGAGTTGCTTCCAGAAGCCT
TATCTTTCCGCGTTCGTTGTCATCGTGATTGTCCTGGGGTCTCGAAACTT
GCGTTCAGATTCAAAGATAAAGACTAAATCGAATGAAACATAGCCTTGCG
TCAGCCTGTGTATTTTTGCCCTTGAACAAGCAGACCCACTCGGTGACGGC
AGTAGCCCCCCCGCAGGAATCCTGCGCAAGGAGTGGGGATTGAAGTCGTG
GAACAGGTCTCGCACGTCGTGTCATTGAATTGCGCCCATATATTGTTTTT
AGTGCGGCTGCTGTACATGCGACGCTGGCACAGTCACCACTCTATAAGCG
CTCTTGCGCGTCCTGCCTGACGTGAGTCCCTCGCGCTCCCCCTGCCGTCT
CTCTTGTTCCGTCCTTGCTTTGTTCGTCCACGCTCGATGGTCGGTTCCGT
TCTGTTCTGTTGTGTTCTTTCTCTCACCCCTTGCCCGTTTCAACGCCTCC
GTTCATACAAACAAACGGTGCTGCTGAAAACCGCGCGCCACGACAAACGA
TGTCTTCTGCGGCGACGAATAATGGCTGCACCAGTCTTCGCCATTAAGCA
TGCAGTTCTGGAAGGCGCCCCCGGTCTCGGAACACACGAGGCTGGCCAAG
AAGCCCGCCCTAGACAAGTGCAAGCCTGACTCGGAGTGGAAGGAAGAGCT
CAGGCCAAACACTTTCCAGGCAAGTGGCATCATGTCCAGACGTGAGGACC
GGAATGCCGGATGGATTGTAGCCGCGAGCGTGTACCAACCGCGTTGTATC
GGTGAAGCATGAACGATGCTGAGTAGGAGGCCAAGACATGTTCGGGGGGT
TCGTGGATGGACGTCGCGGAGAGGAGAGGTGGAAGCTGAAAACGCCCCTT
CGATTCTCGGGCTGACGATGGGATCAGGAGAGCTGCCGCGAGGACATGCT
GCCTGCCTTTTGTCACGGGGACGTGGGGGGATGCCCAGGGAAAGGAAAGG
GAGCTCAAGCAGGCGGCTCAAATTGCCCAGCCCAATCGTTTGCGAGGAAT
CGAACAGAGGGGTGGGGGGCGGGGGGCGGCGGATGATGCCGGGGCAAATC
ACGGAGTCACCACCTCTCGAGACGCATGCACGATAACGTTTCCGGACCAA
GAGGAGGCTCTTTCAGCAATGTCAGTGCGGAGCTGAGCGCGTCGTAACCG
CCGGGCGGTCTCACCCTGTGCTTTGCTTCATTTTTTTCGAATCTGGCGGA
AATCATGGTCCGCTACCTCCCGCGTCGTGCAAGAAACGATAAGCGTGGCA
GGCTTGCGCGTTTTAGTCACCATTGTCTTTCGATGGTTCATGACCCCGAT
CTGTGAGCTGCCGCCCCCCCCACCCCACACACGCGCAAGAAAGGAAGCCT
CGGTGGCTTATCGGAGGGCTGTTGTATCCGGCGAGGCTGTTTGTGTTCGT
TTGTGTCGCACGAAACCGAACAAGTTTGCCCACCTGTAGCAAACAAGTTG
CGTCACAACGGTCCTACCCTGGTCCTACGTGCTCTGTGTCGCAAGGGACC
ACAGGAGAGAATGGGCTATGGACTATGTACCGATGAAGTAGTCTTCACCC
GATCCCATAATCTCAGTTTTCCTGTACGAGCTTCTTTGGCGGATTTTTTT
CTGTAATTTCGAGAGTGAACGAAACGCCGGCTAACCTCCCTCCCCCCCTT
TGCTCTTTTCTGTTGCCGGAAGAGCGCCCGCGGGCTGCAAAGGGAAACCC
TCGCCACCCGCCTGTCTCGTCCACGGCGCATGCAAGCATTACCTGCTGCT
TATTGCCTGCCTCCCCGTCGGATCCGTCCCTCCGTCTATCTGTCCTCTTG
GTTTGTTGCACTTGACTGTCTACCCGTTTTCGGTGTTGCGTTTATCTGCG
CCCCAGGTGCTCCGCGGCAAAGCAACGGAGCCCGCGGGAGTGCGAAAGGC
TAACGGAGGCTTCGACGACACCTTCGAAAAGGGGACGTACGTGTGCGCAG
GTGCGTTCGTGCGTTCGTGCGTTCGTGCGTCGTGGCCTTTCTCTGTGAAA
AGTCAGATATCGTCAGCTGCAGCCTTCGCTGGTTCCATTGGCCGGCCAAG
GCGGGGGCTCCTGCCGCTGCTGTTTTACGTTTGATTCTGCCGCAACGCGT
CGGGCACTGGAACGGCTTTCGGATGCCTTCGCGGCTGCAGCAGGTGGAGC
GCCACCTTTTGACCCTCCTCGCGTCGGCTGACGTTGGGACGGGAGTGTCT
CGACTGGCGTACGCTGTCGACGGCGACAGTCGCACCGCCCGAATGTTCAG
GATTGACGAGCGAGAGCGAACGAAGCAGATACGCGTAGCCAGCAAGGATA
TTTTTGTTGTTGTTTTTTGCTCGTCGCATTTTCTCCGGACCGCCCTTGTC
TTCGCCGTCCTTGTATGCGCTCAGTCTACAGGAGGATTTTGCCTTCCGCG
CATAGCCAAAACTTCGGTCCACTGCTCTCTGTAGGCAGTCGTGTGCGCCG
TTCGCATCAACGACCGAGTTCAGCGCGCCCCACTACGCGCAAACATACCC
CCTTCTCCCTCCCCCGCTCCCTGCTCTTGTTCTCTTCTCGCCTGTTTTCA
CCCTGCGTTCGGCGTTCACGATCGATGCTCCGCGGCACCCGGCGCCGTCG
CACCCCCGAACGAAGCAGGTTGCCGCACCCCTCTGTATGAGGACAGCCAC
AAGTTCGACTGCGGCTGCGGCTGGCCGGGGTTCTGGACCAACATTCAGGA
CGCCGTGTACGAGGAAAGGGACGCGGATGGAAGGCGGTGCGAGATCCTCT
GCTCCGGCTGCGGAGGGTGAGAGGGGGAGGGGGCAGAGAGAGGAGGGGAG
AGAGGTGTGGGGTGCGAGAGAGAGAAAAAGAGAGACAGAGAGAGAGTCAA
GGGAAAGCTGAGAGAGAAAGGAGAGGACTGGATGCGAGAGAGGCAAGAAC
GATGTATTGATGGGGTGAGAGAAAAGAGAGACGGGCAGAGAGAGGGCAGG
ACAGAAACAAGGAAGAGAGCGTGTCGCTGGGTATGAGTGGGGGAAATGTG
CCGACAATTTAGTATCGCCGATATCAGTGCTAGCAGCGCACACGGAACTT
TCCCTGATATGGTTGCGTGGCACGGTCGGAAGGCGCCTAGGGCTAACAGC
ACTTGCAGTTGCATTTGCAGTCGGGACGTGGATTAGCCCGCTGACTTGTT
GTCTGCTGAAGCGCGAATATTGCTCTCACGCAAATCAGCACACGCTTTTT
CCCCAGCGCGCGTTTTGGTTTGTGTCGTTGCAAGATATGCCGCAACGATT
CCATCGAAACCGTATATACGTTCAATCTCGTGGTTGGTTTCTGTGGTAAA
TTTTTATGCGTCAAGACATTTGAACAACCTCCCACCGTCGGCGACCCACG
CCTGTTGCGTTTACTTTCTTCGCCCCTTTTTTTCAACGCCCACCCCGCCC
CCGCCCACGCCCGTGCACGATGGTTGGGCTCCGTCCGTCTCTCATTTTGA
AGGCACCTGGGACACGTGTTCCGAGGTGAGGGTTTTGGAAACCCAGAGCC
GAACGAGCGGCACTGCGTGAACTCCGTATCTCTGGCCTTCATCCCAGAGG
GCAAGACCGACGGCCCCGACGCCGTGGAGTGTACCTATACGGGAGGCGTT
TTTGGTGGCACCGCATAAAGTCACCAAGACGGGAGAAGACGAAGATATAG
GCGCGGGGATGATGCAGGAGTACTTTGACACGCGCGAAAAACGGCCAAAA
GTGATGCGGGCCCGAGAGACTAGATTCGTCCGCGTTCGTGCGTGTCCGTG
TGCGTGTCCGTGTGCGTGTGCGTGTGCGCTCATCTTTTGTTTTTTTGTGC
GAGGTGTGGAAGGAGGAATCGCCAGGGCCCCACCACCAAAAGCGCGCTTG
CGTAGCGTGGCACCGGCGGAAGCGACCGAGGCGGAGGGGTCGATCTTCTA
GTCTTGTCTAACGGAAATCCTGGGCCCGTCTCGGTCAGAGCGGAAAATGG
ACGGAGCTTCCGCTGTTGCTGCTGTTTAGGCCACCGCATGTTGCCGGCTG
GGGGGTGTGCCTATTGGTCCGTGAATATTTTGGTAGCCGCATCCTGTAAC
ACCAGTGTGTTCCGAGGTGCTACAGTAGGGAAGCTTGGCCGGAGAGCGTT
ACTGAAAAGACAATTTCTCGTTCGTTCATGTTCCCATCTCGTTTTTGTAT
GCGAAATACGAACGGGAGTAGACAGCAGAACTTGTACGTGCGCGGATTGT
TGAACCAATTCTGCACCAGGCATCTCATTTCCCGCCTTCCCCTCTTGGAT
TCTAGCTTGTGATTCCCGCTGGCCTGAAGGACTGTGCTCTTGAGCTGCAC
AGAAGCTGCTTCGATACACCATCGCATCGGGAGCCTACACGTATCTGTAC
GAAAGCGCAATAACAGCTGATCAACGGGTGCTGCCATGTGTCTCGAAAAC
CTGGCGGAAACTGATAAAAATCATACGATATGGCACAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1326:6714..13351+

>mRNA_H-canaliculatus_F_contig1326.2669.1 ID=mRNA_H-canaliculatus_F_contig1326.2669.1|Name=mRNA_H-canaliculatus_F_contig1326.2669.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1362bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1326:6714..13351+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGTCCTCCACCATGTGTGCTGCGCTTGCGATCATTAGGAGATGAGG
TCCTCCACCATGTGTGCTGCGCTTGCGATCATTAGGAGCACAACAGCATT
TCTTCCCACGGCAGGACCGGTCGCTGGTCTGTCCCGCGTCGGCTCGAGTA
CCACTAACGTTGCTCACCGGAGCATCCACCGACACAACAGCATTTCTTCC
CACGGCAGGACCGGTCGCTGGTCTGTCCCGCGTCGGCTCGAGTACCACTA
ACGTTGCTCACCGGAGCATCCACCGATCTTCGCCATTAAGCATGCAGTTC
TGGAAGGCGCCCCCGGTCTCGGAACACACGAGGCTGGCCAAGAAGCCCGC
CCTAGACAAGTGCAAGCCTGACTCGGAGTGGAAGGAAGAGCTCAGGCCAA
ACACTTTCCAGTCTTCGCCATTAAGCATGCAGTTCTGGAAGGCGCCCCCG
GTCTCGGAACACACGAGGCTGGCCAAGAAGCCCGCCCTAGACAAGTGCAA
GCCTGACTCGGAGTGGAAGGAAGAGCTCAGGCCAAACACTTTCCAGGTGC
TCCGCGGCAAAGCAACGGAGCCCGCGGGAGTGCGAAAGGCTAACGGAGGC
TTCGACGACACCTTCGAAAAGGGGACGTACGTGTGCGCAGGTGCTCCGCG
GCAAAGCAACGGAGCCCGCGGGAGTGCGAAAGGCTAACGGAGGCTTCGAC
GACACCTTCGAAAAGGGGACGTACGTGTGCGCAGGTTGCCGCACCCCTCT
GTATGAGGACAGCCACAAGTTCGACTGCGGCTGCGGCTGGCCGGGGTTCT
GGACCAACATTCAGGACGCCGTGTACGAGGAAAGGGACGCGGATGGAAGG
CGGTGCGAGATCCTCTGCTCCGGCTGCGGAGGGTTGCCGCACCCCTCTGT
ATGAGGACAGCCACAAGTTCGACTGCGGCTGCGGCTGGCCGGGGTTCTGG
ACCAACATTCAGGACGCCGTGTACGAGGAAAGGGACGCGGATGGAAGGCG
GTGCGAGATCCTCTGCTCCGGCTGCGGAGGGCACCTGGGACACGTGTTCC
GAGGTGAGGGTTTTGGAAACCCAGAGCCGAACGAGCGGCACTGCGTGAAC
TCCGTATCTCTGGCCTTCATCCCAGAGGGCAAGACCGACGGCCCCGACGC
CGTGGAGTGTACCTATACGGGAGGCGTTTTTGGTGGCACCGCATAAGCAC
CTGGGACACGTGTTCCGAGGTGAGGGTTTTGGAAACCCAGAGCCGAACGA
GCGGCACTGCGTGAACTCCGTATCTCTGGCCTTCATCCCAGAGGGCAAGA
CCGACGGCCCCGACGCCGTGGAGTGTACCTATACGGGAGGCGTTTTTGGT
GGCACCGCATAA
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