mRNA_H-canaliculatus_F_contig13228.2655.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13228.2655.1
Unique NamemRNA_H-canaliculatus_F_contig13228.2655.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13228.2655.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.930e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    4 SLTAGLVAGGAAALGAIGGAIGLSGEKPDVEAPSGDAEASVSVPDLPSVDVKKPKKGMFGGIFSSSKAKMEVPGVGASLPEVSADVS 264
            SLTAGL AGG AA+GAIG A+GLSG+KPD E PSGD +ASVSVPD+PSVDVKKPKKG+FGG+F SSK K+EVP    S+P+VSA VS
Sbjct: 2233 SLTAGLAAGGVAAVGAIGAAVGLSGDKPDAELPSGDVDASVSVPDVPSVDVKKPKKGLFGGLFGSSKGKIEVPDADVSVPDVSAGVS 2319
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BLAST of mRNA_H-canaliculatus_F_contig13228.2655.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.310e-28
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    4 SLTAGLVAGGAAALGAIGGAIGLSGEKPDVEAPSGDAEASVSVPDLPSVDVKKPKKGMFGGIFSSSKAKMEVPGVGASLPEVSA 255
            SLTAGL AGG AA+GAIG A+GLSG+KPD E PSGD +ASV+VPD+PSVDVKKPKKG+FGG+F SSKAKMEVP    ++P+V+A
Sbjct: 2182 SLTAGLAAGGMAAVGAIGAAVGLSGDKPDAELPSGDVDASVTVPDVPSVDVKKPKKGLFGGLFGSSKAKMEVPDADVAMPDVAA 2265
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BLAST of mRNA_H-canaliculatus_F_contig13228.2655.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.440e-10
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    4 SLTAGLVAGGAAALGAIGGAIGLSGEKPDVEAPSGDAEASVSVPDLPSVDVKKPKKGMFGGI 189
            SLTAGL A G A +GAIG A+GLSG+KPD E PSG    S+S+P+  SVD++KP+K +FGG+
Sbjct:  760 SLTAGLAASGVAIVGAIGAAVGLSGDKPDAEVPSGVVHVSLSIPEA-SVDIRKPRKVLFGGL 820
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13228.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB94_ECTSI1.930e-2973.56Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
A0A6H5K9M1_9PHAE2.310e-2872.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY67_9PHAE1.440e-1059.68Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13228contigH-canaliculatus_F_contig13228:1409..2509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue4.5e-26
Seed eggNOG ortholog2880.D8LB94
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size346
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13228.2655.1prot_H-canaliculatus_F_contig13228.2655.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13228 1409..2508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.6067736-CDS-H-canaliculatus_F_contig13228:1408..15041622929061.6067736-CDS-H-canaliculatus_F_contig13228:1408..1504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 1409..1504 +
1696845665.106002-CDS-H-canaliculatus_F_contig13228:1408..15041696845665.106002-CDS-H-canaliculatus_F_contig13228:1408..1504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 1409..1504 +
1622929061.6303325-CDS-H-canaliculatus_F_contig13228:1973..20931622929061.6303325-CDS-H-canaliculatus_F_contig13228:1973..2093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 1974..2093 +
1696845665.1190362-CDS-H-canaliculatus_F_contig13228:1973..20931696845665.1190362-CDS-H-canaliculatus_F_contig13228:1973..2093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 1974..2093 +
1622929061.6440089-CDS-H-canaliculatus_F_contig13228:2379..25081622929061.6440089-CDS-H-canaliculatus_F_contig13228:2379..2508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 2380..2508 +
1696845665.1275322-CDS-H-canaliculatus_F_contig13228:2379..25081696845665.1275322-CDS-H-canaliculatus_F_contig13228:2379..2508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13228 2380..2508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13228.2655.1

>prot_H-canaliculatus_F_contig13228.2655.1 ID=prot_H-canaliculatus_F_contig13228.2655.1|Name=mRNA_H-canaliculatus_F_contig13228.2655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
ASLTAGLVAGGAAALGAIGGAIGLSGEKPDVEAPSGDAEASVSVPDLPSV
DVKKPKKGMFGGIFSSSKAKMEVPGVGASLPEVSADVSAPAVSGEVSVPD
VDVDVPKVSEEVSLP
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mRNA from alignment at H-canaliculatus_F_contig13228:1409..2509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13228.2655.1 ID=mRNA_H-canaliculatus_F_contig13228.2655.1|Name=mRNA_H-canaliculatus_F_contig13228.2655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1101bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13228:1409..2509+ (Hapterophycus canaliculatus Oshoro5f female)
GCCTCTCTCACGGCGGGACTCGTGGCCGGTGGCGCTGCCGCGCTGGGTGC
TATCGGCGGTGCCATTGGCCTGTCGGGCGAAAAGCCGGATGTCGAGGTGT
GTAGGGGAAGTGCAACACGTTGTGGACTTTTGTCGCAGCCATGTCATGTC
TCAATCATGGCCTCGTCCCGATGTCGAGCCAGTCACCTACGTGGACAGGA
ATATCCCCTTCTTTTAACTGATTATTTTGCCAACACCACGTACGTTCTGT
TCAATTCGTGTGCGTCGGGCGTGTTCGTTGTACCTTGTGAGAAGCCTCGC
TGACTGTCCCGACAGAGATCGGTGTGTCATTTTTTTCGGTCTTTCTGCCA
CTGACAGAATTGCCTGGAAGTGTGACCACGTCCGTAGCACCCCGATAGAG
GTGGTGGATCGACTGCTGATCGTGATCCGCGCGTCTATCGTTTAGAACAG
ACATGATCGCACGGGCATGCTTCCAAAGGCACTGTGGCCGAGCTGGATGT
TGCGCATTTTTCCTTTGCTGACTGCTCCGCGCAACGCGTCGACGATACTG
ACGCTGTCTCGTCAGGCACCATCCGGTGACGCGGAAGCCAGCGTGTCTGT
TCCAGACTTGCCTTCCGTGGACGTGAAGAAGCCCAAGAAGGGCATGTTCG
GCGGCATTTTCAGCTCTAGCAAGGCGAAGATGGAGGTACGTGACATCTCT
CGACGTGGTCGAATACGTTCGCCGTAAACGGAGCGCACCTGCTGCAGCGT
TTAGAGATTGTATTCGCTGGGCAGGGGCTGGGCGCGACCATAGAACAGCT
GTTCTTTTTTACTTCTTCGGCGTCTTTTGAAGCATTGTCTTCGAGATCGT
GCAAGGACATCAGCTTTGTTTGCGACGCGTGCGAGCGTTGACGTGTTGAG
GCTGTTTGCCTAAGATAGTCGCTGCCCACTTGCCGCTGGTTGTCATGGAA
TCTCTTGCGCCACTGCCGCAGGTCCCTGGTGTCGGTGCCTCGTTGCCCGA
GGTGTCGGCGGACGTATCAGCTCCTGCTGTGTCGGGAGAGGTTTCTGTGC
CCGATGTCGATGTCGACGTGCCCAAGGTCTCCGAAGAAGTGTCTCTGCCG
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13228:1409..2509+

>mRNA_H-canaliculatus_F_contig13228.2655.1 ID=mRNA_H-canaliculatus_F_contig13228.2655.1|Name=mRNA_H-canaliculatus_F_contig13228.2655.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13228:1409..2509+ (Hapterophycus canaliculatus Oshoro5f female)
GCCTCTCTCACGGCGGGACTCGTGGCCGGTGGCGCTGCCGCGCTGGGTGC
TATCGGCGGTGCCATTGGCCTGTCGGGCGAAAAGCCGGATGTCGAGGCCT
CTCTCACGGCGGGACTCGTGGCCGGTGGCGCTGCCGCGCTGGGTGCTATC
GGCGGTGCCATTGGCCTGTCGGGCGAAAAGCCGGATGTCGAGGCACCATC
CGGTGACGCGGAAGCCAGCGTGTCTGTTCCAGACTTGCCTTCCGTGGACG
TGAAGAAGCCCAAGAAGGGCATGTTCGGCGGCATTTTCAGCTCTAGCAAG
GCGAAGATGGAGGCACCATCCGGTGACGCGGAAGCCAGCGTGTCTGTTCC
AGACTTGCCTTCCGTGGACGTGAAGAAGCCCAAGAAGGGCATGTTCGGCG
GCATTTTCAGCTCTAGCAAGGCGAAGATGGAGGTCCCTGGTGTCGGTGCC
TCGTTGCCCGAGGTGTCGGCGGACGTATCAGCTCCTGCTGTGTCGGGAGA
GGTTTCTGTGCCCGATGTCGATGTCGACGTGCCCAAGGTCTCCGAAGAAG
TGTCTCTGCCGGTCCCTGGTGTCGGTGCCTCGTTGCCCGAGGTGTCGGCG
GACGTATCAGCTCCTGCTGTGTCGGGAGAGGTTTCTGTGCCCGATGTCGA
TGTCGACGTGCCCAAGGTCTCCGAAGAAGTGTCTCTGCCG
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