mRNA_H-canaliculatus_F_contig13225.2654.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13225.2654.1
Unique NamemRNA_H-canaliculatus_F_contig13225.2654.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13225.2654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13225contigH-canaliculatus_F_contig13225:6..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13225.2654.1prot_H-canaliculatus_F_contig13225.2654.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13225 233..553 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.5326374-UTR-H-canaliculatus_F_contig13225:5..2321622929061.5326374-UTR-H-canaliculatus_F_contig13225:5..232Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13225 6..232 +
1696845665.0771291-UTR-H-canaliculatus_F_contig13225:5..2321696845665.0771291-UTR-H-canaliculatus_F_contig13225:5..232Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13225 6..232 +
1622929061.5627074-UTR-H-canaliculatus_F_contig13225:553..5581622929061.5627074-UTR-H-canaliculatus_F_contig13225:553..558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13225 554..558 +
1696845665.0961654-UTR-H-canaliculatus_F_contig13225:553..5581696845665.0961654-UTR-H-canaliculatus_F_contig13225:553..558Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13225 554..558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.5478163-CDS-H-canaliculatus_F_contig13225:232..5531622929061.5478163-CDS-H-canaliculatus_F_contig13225:232..553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13225 233..553 +
1696845665.0868394-CDS-H-canaliculatus_F_contig13225:232..5531696845665.0868394-CDS-H-canaliculatus_F_contig13225:232..553Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13225 233..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13225.2654.1

>prot_H-canaliculatus_F_contig13225.2654.1 ID=prot_H-canaliculatus_F_contig13225.2654.1|Name=mRNA_H-canaliculatus_F_contig13225.2654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MPKMPRDRSISQRAQLSFAESSGSQASPAQPPIQEQRRGNKHSPFGKPKR
GRKFEVSILTGTSVSHACLGITDARKQNILPPPLQHASFTRVQHAILQPY
FPRVDW*
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mRNA from alignment at H-canaliculatus_F_contig13225:6..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13225.2654.1 ID=mRNA_H-canaliculatus_F_contig13225.2654.1|Name=mRNA_H-canaliculatus_F_contig13225.2654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=553bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13225:6..558+ (Hapterophycus canaliculatus Oshoro5f female)
TGCGTAGACGTGAACCACACCTCTATTTGGCTCGCTTACAAGGCGCGAGG
GAAGTGAGACTTCGCTTGCAGCCGTCAAAGCGAACACGCCAAGCAAGCAC
GTATCGCACCATGCGCCAATCACAAATTCAACGGGCGAAGGAGCGGATGA
TACACGTTGATGAGCAGTACACAATCGATCAAGCAAAATAAGGCAAAGCC
GCCCTCACAAGCAGGTTCGCCCTGTGTATGCCCAAAATGCCACGCGATAG
AAGCATCTCCCAGCGTGCGCAACTGAGCTTTGCCGAAAGCAGCGGAAGCC
AAGCAAGCCCTGCACAACCGCCTATACAAGAACAGCGACGCGGCAACAAA
CACTCGCCGTTCGGGAAACCAAAGAGGGGACGAAAGTTCGAAGTTTCCAT
ATTGACAGGCACATCAGTCAGCCACGCCTGTCTGGGGATCACGGATGCAC
GCAAGCAAAATATCCTTCCTCCTCCTTTGCAACACGCCTCCTTCACCAGG
GTGCAGCACGCGATCTTACAACCTTATTTTCCAAGGGTAGACTGGTGAAG
CAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13225:6..558+

>mRNA_H-canaliculatus_F_contig13225.2654.1 ID=mRNA_H-canaliculatus_F_contig13225.2654.1|Name=mRNA_H-canaliculatus_F_contig13225.2654.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13225:6..558+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCAAAATGCCACGCGATAGAAGCATCTCCCAGCGTGCGCAACTGAG
CTTTGCCGAAAGCAGCGGAAGCCAAGCAAGCCCTGCACAACCGCCTATAC
AAGAACAGCGACGCGGCAACAAACACTCGCCGTTCGGGAAACCAAAGAGG
GGACGAAAGTTCGAAGTTTCCATATTGACAGGCACATCAGTCAGCCACGC
CTGTCTGGGGATCACGGATGCACGCAAGCAAAATATCCTTCCTCCTCCTT
TGCAACACGCCTCCTTCACCAGGGTGCAGCACGCGATCTTACAACCTTAT
TTTCCAAGGGTAGACTGGTGAATGCCCAAAATGCCACGCGATAGAAGCAT
CTCCCAGCGTGCGCAACTGAGCTTTGCCGAAAGCAGCGGAAGCCAAGCAA
GCCCTGCACAACCGCCTATACAAGAACAGCGACGCGGCAACAAACACTCG
CCGTTCGGGAAACCAAAGAGGGGACGAAAGTTCGAAGTTTCCATATTGAC
AGGCACATCAGTCAGCCACGCCTGTCTGGGGATCACGGATGCACGCAAGC
AAAATATCCTTCCTCCTCCTTTGCAACACGCCTCCTTCACCAGGGTGCAG
CACGCGATCTTACAACCTTATTTTCCAAGGGTAGACTGGTGA
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