mRNA_H-canaliculatus_F_contig13223.2652.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13223.2652.1
Unique NamemRNA_H-canaliculatus_F_contig13223.2652.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13223.2652.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 2.100e-64
Identity = 121/165 (73.33%), Postives = 133/165 (80.61%), Query Frame = 1 
Query:   19 GGRNEVLAFVECLAANQGHMILSRNKAVKAATPELLWSLLREPSVSKHKSCEAVTNFFAQMLQISPTNQVSLAAPAPSPAGIVGGVNAAGGSGCSGYLYHYKFLGQCIDFLREKARCVPPSGVLSEAEEAAVSRSLELVRFLLENFNSKHVGDVVRLYAFPARSR 513
            GGR+EVLAFVECLAANQGH+IL+RNKAVKAATPELLWSLLREPSVS+HKSCEAVT+FFAQMLQISPT                GG+    G+G +GYL+H+KFLGQCIDFLREKA CVPPSGVLSEAEEAAVSRSLELVRFLLENFNS        LY FP +S+
Sbjct:   24 GGRSEVLAFVECLAANQGHIILTRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFAQMLQISPTLTTG------------GGLE---GAGPTGYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFNS--------LYPFPGKSK 165
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BLAST of mRNA_H-canaliculatus_F_contig13223.2652.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.660e-61
Identity = 114/148 (77.03%), Postives = 124/148 (83.78%), Query Frame = 1 
Query:   19 GGRNEVLAFVECLAANQGHMILSRNKAVKAATPELLWSLLREPSVSKHKSCEAVTNFFAQMLQISPTNQVSLAAPAPSPAGIVGGVNAAGGSGCSGYLYHYKFLGQCIDFLREKARCVPPSGVLSEAEEAAVSRSLELVRFLLENFNS 462
            GGR+EVLAFVECLAANQGH+IL+RNKAVKAAT ELLWSLLREPSV++HKSCEAVT+FFAQMLQISPT              +  GV   GG G + YL+H+KFLGQCIDFLREKA CVPPSGVLSEAEEAAVSRSLELVRFLLENFNS
Sbjct:  561 GGRSEVLAFVECLAANQGHIILTRNKAVKAATTELLWSLLREPSVTRHKSCEAVTSFFAQMLQISPT--------------LTAGVGPEGG-GPARYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFNS 693
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13223.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIA1_ECTSI2.100e-6473.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE6.660e-6177.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13223contigH-canaliculatus_F_contig13223:55..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue4e-56
Seed eggNOG ortholog2880.D8LIA1
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size569
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929061.4469705-CDS-H-canaliculatus_F_contig13223:54..6211622929061.4469705-CDS-H-canaliculatus_F_contig13223:54..621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13223 55..621 +
1696845665.048124-CDS-H-canaliculatus_F_contig13223:54..6211696845665.048124-CDS-H-canaliculatus_F_contig13223:54..621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13223 55..621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13223.2652.1prot_H-canaliculatus_F_contig13223.2652.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13223 55..621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13223.2652.1

>prot_H-canaliculatus_F_contig13223.2652.1 ID=prot_H-canaliculatus_F_contig13223.2652.1|Name=mRNA_H-canaliculatus_F_contig13223.2652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
VASKAKGGRNEVLAFVECLAANQGHMILSRNKAVKAATPELLWSLLREPS
VSKHKSCEAVTNFFAQMLQISPTNQVSLAAPAPSPAGIVGGVNAAGGSGC
SGYLYHYKFLGQCIDFLREKARCVPPSGVLSEAEEAAVSRSLELVRFLLE
NFNSKHVGDVVRLYAFPARSRRAAAAADARAAAAAAAKV
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mRNA from alignment at H-canaliculatus_F_contig13223:55..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13223.2652.1 ID=mRNA_H-canaliculatus_F_contig13223.2652.1|Name=mRNA_H-canaliculatus_F_contig13223.2652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=569bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13223:55..623+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGCGAGCAAGGCAAAGGGGGGCCGGAACGAGGTGCTCGCGTTCGTGGA
GTGCCTGGCGGCTAACCAGGGCCATATGATCCTCTCGCGGAACAAGGCCG
TCAAGGCCGCGACCCCGGAGCTTCTGTGGTCTCTCCTGCGCGAGCCCAGC
GTCTCCAAGCACAAGTCTTGCGAGGCGGTCACGAATTTCTTTGCGCAGAT
GCTCCAGATCTCGCCGACCAACCAGGTGAGCCTCGCAGCCCCGGCCCCGA
GCCCCGCCGGGATCGTCGGGGGAGTGAACGCCGCGGGGGGGAGCGGTTGC
TCGGGGTACCTGTATCACTACAAGTTCCTGGGGCAGTGCATCGATTTCTT
GCGGGAGAAGGCGCGGTGCGTCCCCCCTTCGGGCGTCCTGAGCGAGGCAG
AAGAGGCGGCCGTTTCGCGGTCGCTCGAGCTCGTCCGCTTCCTCCTGGAG
AATTTCAACTCGAAGCACGTCGGGGACGTGGTGCGGCTGTACGCTTTCCC
GGCGAGGTCGAGAAGAGCGGCGGCAGCAGCGGACGCGCGGGCGGCGGCGG
CGGCAGCGGCAAAGGTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13223:55..623+

>mRNA_H-canaliculatus_F_contig13223.2652.1 ID=mRNA_H-canaliculatus_F_contig13223.2652.1|Name=mRNA_H-canaliculatus_F_contig13223.2652.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13223:55..623+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGCGAGCAAGGCAAAGGGGGGCCGGAACGAGGTGCTCGCGTTCGTGGA
GTGCCTGGCGGCTAACCAGGGCCATATGATCCTCTCGCGGAACAAGGCCG
TCAAGGCCGCGACCCCGGAGCTTCTGTGGTCTCTCCTGCGCGAGCCCAGC
GTCTCCAAGCACAAGTCTTGCGAGGCGGTCACGAATTTCTTTGCGCAGAT
GCTCCAGATCTCGCCGACCAACCAGGTGAGCCTCGCAGCCCCGGCCCCGA
GCCCCGCCGGGATCGTCGGGGGAGTGAACGCCGCGGGGGGGAGCGGTTGC
TCGGGGTACCTGTATCACTACAAGTTCCTGGGGCAGTGCATCGATTTCTT
GCGGGAGAAGGCGCGGTGCGTCCCCCCTTCGGGCGTCCTGAGCGAGGCAG
AAGAGGCGGCCGTTTCGCGGTCGCTCGAGCTCGTCCGCTTCCTCCTGGAG
AATTTCAACTCGAAGCACGTCGGGGACGTGGTGCGGCTGTACGCTTTCCC
GGCGAGGTCGAGAAGAGCGGCGGCAGCAGCGGACGCGCGGGCGGCGGCGG
CGGCAGCGGCAAAGGTGGTCGCGAGCAAGGCAAAGGGGGGCCGGAACGAG
GTGCTCGCGTTCGTGGAGTGCCTGGCGGCTAACCAGGGCCATATGATCCT
CTCGCGGAACAAGGCCGTCAAGGCCGCGACCCCGGAGCTTCTGTGGTCTC
TCCTGCGCGAGCCCAGCGTCTCCAAGCACAAGTCTTGCGAGGCGGTCACG
AATTTCTTTGCGCAGATGCTCCAGATCTCGCCGACCAACCAGGTGAGCCT
CGCAGCCCCGGCCCCGAGCCCCGCCGGGATCGTCGGGGGAGTGAACGCCG
CGGGGGGGAGCGGTTGCTCGGGGTACCTGTATCACTACAAGTTCCTGGGG
CAGTGCATCGATTTCTTGCGGGAGAAGGCGCGGTGCGTCCCCCCTTCGGG
CGTCCTGAGCGAGGCAGAAGAGGCGGCCGTTTCGCGGTCGCTCGAGCTCG
TCCGCTTCCTCCTGGAGAATTTCAACTCGAAGCACGTCGGGGACGTGGTG
CGGCTGTACGCTTTCCCGGCGAGGTCGAGAAGAGCGGCGGCAGCAGCGGA
CGCGCGGGCGGCGGCGGCGGCAGCGGCAAAGGTG
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